mRNA_S-ischiensis_contig9.20376.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20376.1
Unique NamemRNA_S-ischiensis_contig9.20376.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:11110..12718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue1.3e-06
Seed eggNOG ortholog2880.D8LD22
KEGG koko:K21440
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size1475
Cds size585
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20376.1prot_S-ischiensis_contig9.20376.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 11230..11948 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817374.154638-UTR-S-ischiensis_contig9:11109..112291622817374.154638-UTR-S-ischiensis_contig9:11109..11229Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 11110..11229 +
1695741064.7045267-UTR-S-ischiensis_contig9:11109..112291695741064.7045267-UTR-S-ischiensis_contig9:11109..11229Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 11110..11229 +
1622817374.193215-UTR-S-ischiensis_contig9:11948..127181622817374.193215-UTR-S-ischiensis_contig9:11948..12718Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 11949..12718 +
1695741064.7443507-UTR-S-ischiensis_contig9:11948..127181695741064.7443507-UTR-S-ischiensis_contig9:11948..12718Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 11949..12718 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817374.1684294-CDS-S-ischiensis_contig9:11229..112711622817374.1684294-CDS-S-ischiensis_contig9:11229..11271Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 11230..11271 +
1695741064.7201188-CDS-S-ischiensis_contig9:11229..112711695741064.7201188-CDS-S-ischiensis_contig9:11229..11271Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 11230..11271 +
1622817374.1805375-CDS-S-ischiensis_contig9:11405..119481622817374.1805375-CDS-S-ischiensis_contig9:11405..11948Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 11406..11948 +
1695741064.7325988-CDS-S-ischiensis_contig9:11405..119481695741064.7325988-CDS-S-ischiensis_contig9:11405..11948Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 11406..11948 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20376.1

>prot_S-ischiensis_contig9.20376.1 ID=prot_S-ischiensis_contig9.20376.1|Name=mRNA_S-ischiensis_contig9.20376.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=195bp
MWACSAAAGAGPDRGAEAATVQRATDIMDLVRRHLTRKQWGEWLNTPLRC
AARAGDLDVVKGLVESGADVDAQLREDGGTALHVAVGEHPAVLHKLVRSG
AAMETSNAAGYTALHVAAGHGCVAAVEALVAAGVAVDGKDQRPRREDGAS
SGLKRRSCCRGSGAAGGWRQCQCLCQWARGKRGRRGARRQHPSH*
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mRNA from alignment at S-ischiensis_contig9:11110..12718+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20376.1 ID=mRNA_S-ischiensis_contig9.20376.1|Name=mRNA_S-ischiensis_contig9.20376.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1609bp|location=Sequence derived from alignment at S-ischiensis_contig9:11110..12718+ (Schizocladia ischiensis KU_0333)
GAGTTCCAGGCCCCGTGCCAAAAGGCTCGTCCCAAAACAGGACTCAACGA
AGCCCTTCCTTCCCTCGCAGGGCAATATATACTCCAGCAGCAATCATGGG
TGGCCCTACATACCCTTGGGATGTGGGCGTGTTCTGCTGCAGCTGGCGCG
GGACCAGATCGGGTGGGTTGACATGCCGCTGCTGACGTGTTATTCCCCAC
TGGACACCCCTCCCCCGAAAATATTCACCAAACGACACTCTTTGACGAAC
TTACAATCATACCTCCCGCCCATTCACCTGGTGGCTACCACCACAGGGAG
CAGAGGCCGCTACTGTGCAGCGAGCAACAGACATCATGGACCTGGTGCGG
CGACACCTGACCAGAAAGCAGTGGGGTGAGTGGCTCAACACTCCTCTCCG
GTGTGCGGCCAGGGCGGGGGACTTGGACGTGGTGAAAGGCCTTGTGGAGT
CCGGCGCGGATGTAGACGCCCAACTGCGTGAGGATGGCGGCACTGCCCTC
CATGTTGCCGTGGGTGAGCACCCTGCAGTCCTGCACAAGCTGGTTCGTTC
AGGGGCGGCCATGGAAACGTCGAATGCAGCAGGGTATACAGCTCTCCATG
TGGCTGCTGGACACGGTTGTGTGGCGGCCGTGGAGGCGCTGGTGGCAGCA
GGGGTTGCGGTGGATGGCAAAGACCAAAGGCCTCGAAGGGAAGACGGCGC
TTCATCTGGCTTGAAACGAAGGTCATGCTGCCGTGGTTCAGGTGCTGCTG
GAGGGTGGCGCCAATGTCAATGTTTGTGCCAATGGGCACGAGGAAAGCGA
GGAAGGCGAGGAGCTCGGAGGCAACACCCCTCTCATTGAGGCATCTTGTC
ACGGGAATGTGGAGGTGGGAAGACTGCTGCTGGAGGCAGTTGCCGCTATT
GATGCCAGGGGATGGCGGGGGAGGACCGCGCTCCACGGGGCCGCTGGATA
TGGCCAGGTGGAGACAGTGCCGCAGTTGGTCAATGCCGGTGCCAATGTAG
ATGCCGTAGAAGACAGCAACATTGCGAATAGACCTTTACACTTGGCCGCA
TATTATTGTAATGTAGCGATAGTGCAGAGCCTTCTGGGTTCGGGGGCGGA
TGTAGACGCCAGAGACAACTCAAGGTGTACGCATCTCCACGCTGCCTGTG
AGGAGGGGGAAGAGGAGGTATTCAAGGTCCTTCTTGAGGCAGGTACCGAT
GTGAACGCACGAGATGAGGATGACGAGTCCCCTCTTCACTTGGCTTGCTG
TTGGGCAAAGGAGGAGTGTATTGAGGTCCTGCTTCGCTTTGGGGCGGACG
AGCTGGCCATGGACAACGGCCTCCGCAGGCCCAGCCAAGTTGTCAGCGAC
GGGGACGACAATAACCGGGACCTGGCCGCCGAAGCCCGGATCACCGCGAT
GCTGCAGAACGCGCCCTCGGACCGTGCCTGGCGTCGCCGCGGGTGGCTGG
TCATGATGCGGGCCCGCCGGTGCAGCTTGCATCGTGGCGGGAGGCTGCGC
AAGGACACCCCGGGCCATGGGACGGCGCCCAGCCTTTGCCCCCTCACGAT
AGTCATGGCATAGAGGGCAAGCGAGCGAGCGTGGGACCTGGGGCGGGGGG
GGCAGCGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:11110..12718+

>mRNA_S-ischiensis_contig9.20376.1 ID=mRNA_S-ischiensis_contig9.20376.1|Name=mRNA_S-ischiensis_contig9.20376.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1170bp|location=Sequence derived from alignment at S-ischiensis_contig9:11110..12718+ (Schizocladia ischiensis KU_0333)
ATGTGGGCGTGTTCTGCTGCAGCTGGCGCGGGACCAGATCGGATGTGGGC
GTGTTCTGCTGCAGCTGGCGCGGGACCAGATCGGGGAGCAGAGGCCGCTA
CTGTGCAGCGAGCAACAGACATCATGGACCTGGTGCGGCGACACCTGACC
AGAAAGCAGTGGGGTGAGTGGCTCAACACTCCTCTCCGGTGTGCGGCCAG
GGCGGGGGACTTGGACGTGGTGAAAGGCCTTGTGGAGTCCGGCGCGGATG
TAGACGCCCAACTGCGTGAGGATGGCGGCACTGCCCTCCATGTTGCCGTG
GGTGAGCACCCTGCAGTCCTGCACAAGCTGGTTCGTTCAGGGGCGGCCAT
GGAAACGTCGAATGCAGCAGGGTATACAGCTCTCCATGTGGCTGCTGGAC
ACGGTTGTGTGGCGGCCGTGGAGGCGCTGGTGGCAGCAGGGGTTGCGGTG
GATGGCAAAGACCAAAGGCCTCGAAGGGAAGACGGCGCTTCATCTGGCTT
GAAACGAAGGTCATGCTGCCGTGGTTCAGGTGCTGCTGGAGGGTGGCGCC
AATGTCAATGTTTGTGCCAATGGGCACGAGGAAAGCGAGGAAGGCGAGGA
GCTCGGAGGCAACACCCCTCTCATTGAGGAGCAGAGGCCGCTACTGTGCA
GCGAGCAACAGACATCATGGACCTGGTGCGGCGACACCTGACCAGAAAGC
AGTGGGGTGAGTGGCTCAACACTCCTCTCCGGTGTGCGGCCAGGGCGGGG
GACTTGGACGTGGTGAAAGGCCTTGTGGAGTCCGGCGCGGATGTAGACGC
CCAACTGCGTGAGGATGGCGGCACTGCCCTCCATGTTGCCGTGGGTGAGC
ACCCTGCAGTCCTGCACAAGCTGGTTCGTTCAGGGGCGGCCATGGAAACG
TCGAATGCAGCAGGGTATACAGCTCTCCATGTGGCTGCTGGACACGGTTG
TGTGGCGGCCGTGGAGGCGCTGGTGGCAGCAGGGGTTGCGGTGGATGGCA
AAGACCAAAGGCCTCGAAGGGAAGACGGCGCTTCATCTGGCTTGAAACGA
AGGTCATGCTGCCGTGGTTCAGGTGCTGCTGGAGGGTGGCGCCAATGTCA
ATGTTTGTGCCAATGGGCACGAGGAAAGCGAGGAAGGCGAGGAGCTCGGA
GGCAACACCCCTCTCATTGA
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