mRNA_S-ischiensis_contig89.20365.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig89.20365.1 vs. uniprot
Match: A0A6H5L1V5_9PHAE (BTP domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V5_9PHAE) HSP 1 Score: 107 bits (267), Expect = 1.010e-25 Identity = 51/92 (55.43%), Postives = 67/92 (72.83%), Query Frame = 1
Query: 76 GMTGSDTFARSVTRQAVAHVCLALGFDDTTSGCLETMTDVVRHYVESMGRAAADHARRAGRTEVNLPDVLDALQQMREPLSWRDLQAFAFLE 351
G S FAR +T+QAVAHVC+A+GF T++G L+ +TDVV+ YVE+M + ++ RAGRTE N+PDVL QQMR PLSW +L+ FAF E
Sbjct: 25 GEVDSAQFARILTKQAVAHVCVAIGFTATSAGALDCLTDVVQRYVETMAKRTMENTYRAGRTEPNIPDVLQGFQQMRTPLSWTELRDFAFSE 116
BLAST of mRNA_S-ischiensis_contig89.20365.1 vs. uniprot
Match: A0A7S2WV84_9STRA (Transcription initiation factor TFIID subunit 8 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WV84_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 2.090e-14 Identity = 37/91 (40.66%), Postives = 58/91 (63.74%), Query Frame = 1
Query: 82 TGSDTFARSVTRQAVAHVCLALGFDDTTSGCLETMTDVVRHYVESMGRAAADHARRAGRTEVNLPDVLDALQQMR-EPLSWRDLQAFAFLE 351
T + F+ V QA AH+CLALGF+ T L+T+ DV++HYVE++G A GR +V D++ A++Q+ P++W++L+ FAF E
Sbjct: 58 TSPEYFSHRVCVQAAAHICLALGFERTYPAVLDTIADVIKHYVETIGSHAHAITEHGGRQDVTAIDIIAAMKQLSPHPVNWQELRRFAFNE 148
BLAST of mRNA_S-ischiensis_contig89.20365.1 vs. uniprot
Match: A0A1J6IH49_NICAT (Transcription initiation factor tfiid subunit 8 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=A0A1J6IH49_NICAT) HSP 1 Score: 62.0 bits (149), Expect = 9.800e-10 Identity = 28/73 (38.36%), Postives = 45/73 (61.64%), Query Frame = 1
Query: 85 GSDTFARSVTRQAVAHVCLALGFDDTTSGCLETMTDVVRHYVESMGRAAADHARRAGRTEVNLPDVLDALQQM 303
G D F R+++R AVA +C ++GF+ LE++ DV Y+ +G+ A+ A AGRT+ N+ DV+ L+ M
Sbjct: 26 GFDDFGRAISRIAVAQICESIGFESFNESALESLADVAIKYIIDLGKTASSGANLAGRTQCNVFDVIQGLEDM 98
BLAST of mRNA_S-ischiensis_contig89.20365.1 vs. uniprot
Match: UPI000904A0A1 (transcription initiation factor TFIID subunit 8-like n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI000904A0A1) HSP 1 Score: 62.0 bits (149), Expect = 2.310e-9 Identity = 28/73 (38.36%), Postives = 45/73 (61.64%), Query Frame = 1
Query: 85 GSDTFARSVTRQAVAHVCLALGFDDTTSGCLETMTDVVRHYVESMGRAAADHARRAGRTEVNLPDVLDALQQM 303
G D F R+++R AVA +C ++GF+ LE++ DV Y+ +G+ A+ A AGRT+ N+ DV+ L+ M
Sbjct: 26 GFDDFGRAISRIAVAQICESIGFESFNESALESLADVAIKYIIDLGKTASSGANLAGRTQCNVFDVIQGLEDM 98
BLAST of mRNA_S-ischiensis_contig89.20365.1 vs. uniprot
Match: A0A2R6Q9L7_ACTCC (Transcription initiation factor TFIID subunit 8 n=3 Tax=Actinidia TaxID=3624 RepID=A0A2R6Q9L7_ACTCC) HSP 1 Score: 63.2 bits (152), Expect = 3.920e-9 Identity = 28/71 (39.44%), Postives = 46/71 (64.79%), Query Frame = 1
Query: 91 DTFARSVTRQAVAHVCLALGFDDTTSGCLETMTDVVRHYVESMGRAAADHARRAGRTEVNLPDVLDALQQM 303
D F R+V++ AVA +C +GF+ LE +T++ Y+ +G+AA+ +AR AGRTE N+ DV+ L+ +
Sbjct: 26 DDFGRAVSKIAVAQICEGVGFETFNESALEALTEITIRYLRDLGKAASFYARLAGRTECNVFDVIQGLEDL 96
BLAST of mRNA_S-ischiensis_contig89.20365.1 vs. uniprot
Match: A0A6P6G2X3_ZIZJJ (Transcription initiation factor TFIID subunit 8 n=1 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P6G2X3_ZIZJJ) HSP 1 Score: 63.2 bits (152), Expect = 3.950e-9 Identity = 29/76 (38.16%), Postives = 46/76 (60.53%), Query Frame = 1
Query: 85 GSDTFARSVTRQAVAHVCLALGFDDTTSGCLETMTDVVRHYVESMGRAAADHARRAGRTEVNLPDVLDALQQMREP 312
G D +A+++ + AVA +C GF LET++D+ Y ++G+AA D+A AGRTE N+ D++ L+ M P
Sbjct: 22 GGDEYAQAIAKIAVAQICEKEGFQTFQPSALETLSDIAVRYTRNIGKAAHDYANLAGRTECNVFDIIQGLEDMGLP 97
BLAST of mRNA_S-ischiensis_contig89.20365.1 vs. uniprot
Match: A0A2K2ATA0_POPTR (Transcription initiation factor TFIID subunit 8 n=3 Tax=Populus TaxID=3689 RepID=A0A2K2ATA0_POPTR) HSP 1 Score: 62.8 bits (151), Expect = 5.440e-9 Identity = 31/74 (41.89%), Postives = 47/74 (63.51%), Query Frame = 1
Query: 91 DTFARSVTRQAVAHVCLALGFDDTTSGCLETMTDVVRHYVESMGRAAADHARRAGRTEVNLPDVLDALQQMREP 312
D FAR++ + AVA +C ++GF LET+TDV Y+ ++G+AA A AGRTE N+ DV+ L+++ P
Sbjct: 28 DEFARAIGKIAVAQMCESMGFQSFQQSALETLTDVTTWYIRNIGKAAQLCANLAGRTEGNVFDVIQGLEELGLP 101
BLAST of mRNA_S-ischiensis_contig89.20365.1 vs. uniprot
Match: A0A7J7DVL3_TRIWF (Transcription initiation factor TFIID subunit 8 n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7DVL3_TRIWF) HSP 1 Score: 62.4 bits (150), Expect = 7.210e-9 Identity = 28/75 (37.33%), Postives = 46/75 (61.33%), Query Frame = 1
Query: 82 TGSDTFARSVTRQAVAHVCLALGFDDTTSGCLETMTDVVRHYVESMGRAAADHARRAGRTEVNLPDVLDALQQMR 306
+G+D F R+V++ AVA +C ++GF L+ + D+ Y+ G+AA +A AGRTE NL DV+ L+ ++
Sbjct: 19 SGADEFGRAVSKVAVAQICQSVGFQGFKESALDALADITIRYLRDQGKAARFNANLAGRTECNLFDVIQGLEDLK 93
BLAST of mRNA_S-ischiensis_contig89.20365.1 vs. uniprot
Match: A0A4U5PTR8_POPAL (Transcription initiation factor TFIID subunit 8 n=1 Tax=Populus alba TaxID=43335 RepID=A0A4U5PTR8_POPAL) HSP 1 Score: 62.0 bits (149), Expect = 9.530e-9 Identity = 28/71 (39.44%), Postives = 44/71 (61.97%), Query Frame = 1
Query: 91 DTFARSVTRQAVAHVCLALGFDDTTSGCLETMTDVVRHYVESMGRAAADHARRAGRTEVNLPDVLDALQQM 303
D FAR++ + AVA +C LGF LE ++DV Y+ ++G+ A HA AGRTE N+ DV+ ++++
Sbjct: 28 DEFARAIAKVAVAQMCETLGFQSFQQSALEKLSDVTTWYIRNIGKTAQFHANLAGRTEGNVFDVIQGMEEL 98
BLAST of mRNA_S-ischiensis_contig89.20365.1 vs. uniprot
Match: A0A2P5BBQ6_PARAD (Transcription initiation factor TFIID subunit 8 n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5BBQ6_PARAD) HSP 1 Score: 61.6 bits (148), Expect = 1.370e-8 Identity = 27/74 (36.49%), Postives = 48/74 (64.86%), Query Frame = 1
Query: 82 TGSDTFARSVTRQAVAHVCLALGFDDTTSGCLETMTDVVRHYVESMGRAAADHARRAGRTEVNLPDVLDALQQM 303
+G D FA+++ + AVA +C + GF + LET++D+ Y+ S+G+ A +A AGRTE N+ D++ +L+ +
Sbjct: 18 SGGDDFAQAIAKIAVAQICESEGFQAFQNSALETLSDIAVRYIASIGKNAHSYANLAGRTECNVFDIIQSLEDL 91 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig89.20365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig89.20365.1 >prot_S-ischiensis_contig89.20365.1 ID=prot_S-ischiensis_contig89.20365.1|Name=mRNA_S-ischiensis_contig89.20365.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=100bp MTGSDTFARSVTRQAVAHVCLALGFDDTTSGCLETMTDVVRHYVESMGRAback to top mRNA from alignment at S-ischiensis_contig89:437838..438761- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig89.20365.1 ID=mRNA_S-ischiensis_contig89.20365.1|Name=mRNA_S-ischiensis_contig89.20365.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=924bp|location=Sequence derived from alignment at S-ischiensis_contig89:437838..438761- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig89:437838..438761- >mRNA_S-ischiensis_contig89.20365.1 ID=mRNA_S-ischiensis_contig89.20365.1|Name=mRNA_S-ischiensis_contig89.20365.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=600bp|location=Sequence derived from alignment at S-ischiensis_contig89:437838..438761- (Schizocladia ischiensis KU_0333)back to top |