mRNA_S-ischiensis_contig89.20365.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig89.20365.1
Unique NamemRNA_S-ischiensis_contig89.20365.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig89.20365.1 vs. uniprot
Match: A0A6H5L1V5_9PHAE (BTP domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V5_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.010e-25
Identity = 51/92 (55.43%), Postives = 67/92 (72.83%), Query Frame = 1
Query:   76 GMTGSDTFARSVTRQAVAHVCLALGFDDTTSGCLETMTDVVRHYVESMGRAAADHARRAGRTEVNLPDVLDALQQMREPLSWRDLQAFAFLE 351
            G   S  FAR +T+QAVAHVC+A+GF  T++G L+ +TDVV+ YVE+M +   ++  RAGRTE N+PDVL   QQMR PLSW +L+ FAF E
Sbjct:   25 GEVDSAQFARILTKQAVAHVCVAIGFTATSAGALDCLTDVVQRYVETMAKRTMENTYRAGRTEPNIPDVLQGFQQMRTPLSWTELRDFAFSE 116          
BLAST of mRNA_S-ischiensis_contig89.20365.1 vs. uniprot
Match: A0A7S2WV84_9STRA (Transcription initiation factor TFIID subunit 8 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WV84_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.090e-14
Identity = 37/91 (40.66%), Postives = 58/91 (63.74%), Query Frame = 1
Query:   82 TGSDTFARSVTRQAVAHVCLALGFDDTTSGCLETMTDVVRHYVESMGRAAADHARRAGRTEVNLPDVLDALQQMR-EPLSWRDLQAFAFLE 351
            T  + F+  V  QA AH+CLALGF+ T    L+T+ DV++HYVE++G  A       GR +V   D++ A++Q+   P++W++L+ FAF E
Sbjct:   58 TSPEYFSHRVCVQAAAHICLALGFERTYPAVLDTIADVIKHYVETIGSHAHAITEHGGRQDVTAIDIIAAMKQLSPHPVNWQELRRFAFNE 148          
BLAST of mRNA_S-ischiensis_contig89.20365.1 vs. uniprot
Match: A0A1J6IH49_NICAT (Transcription initiation factor tfiid subunit 8 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=A0A1J6IH49_NICAT)

HSP 1 Score: 62.0 bits (149), Expect = 9.800e-10
Identity = 28/73 (38.36%), Postives = 45/73 (61.64%), Query Frame = 1
Query:   85 GSDTFARSVTRQAVAHVCLALGFDDTTSGCLETMTDVVRHYVESMGRAAADHARRAGRTEVNLPDVLDALQQM 303
            G D F R+++R AVA +C ++GF+      LE++ DV   Y+  +G+ A+  A  AGRT+ N+ DV+  L+ M
Sbjct:   26 GFDDFGRAISRIAVAQICESIGFESFNESALESLADVAIKYIIDLGKTASSGANLAGRTQCNVFDVIQGLEDM 98          
BLAST of mRNA_S-ischiensis_contig89.20365.1 vs. uniprot
Match: UPI000904A0A1 (transcription initiation factor TFIID subunit 8-like n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI000904A0A1)

HSP 1 Score: 62.0 bits (149), Expect = 2.310e-9
Identity = 28/73 (38.36%), Postives = 45/73 (61.64%), Query Frame = 1
Query:   85 GSDTFARSVTRQAVAHVCLALGFDDTTSGCLETMTDVVRHYVESMGRAAADHARRAGRTEVNLPDVLDALQQM 303
            G D F R+++R AVA +C ++GF+      LE++ DV   Y+  +G+ A+  A  AGRT+ N+ DV+  L+ M
Sbjct:   26 GFDDFGRAISRIAVAQICESIGFESFNESALESLADVAIKYIIDLGKTASSGANLAGRTQCNVFDVIQGLEDM 98          
BLAST of mRNA_S-ischiensis_contig89.20365.1 vs. uniprot
Match: A0A2R6Q9L7_ACTCC (Transcription initiation factor TFIID subunit 8 n=3 Tax=Actinidia TaxID=3624 RepID=A0A2R6Q9L7_ACTCC)

HSP 1 Score: 63.2 bits (152), Expect = 3.920e-9
Identity = 28/71 (39.44%), Postives = 46/71 (64.79%), Query Frame = 1
Query:   91 DTFARSVTRQAVAHVCLALGFDDTTSGCLETMTDVVRHYVESMGRAAADHARRAGRTEVNLPDVLDALQQM 303
            D F R+V++ AVA +C  +GF+      LE +T++   Y+  +G+AA+ +AR AGRTE N+ DV+  L+ +
Sbjct:   26 DDFGRAVSKIAVAQICEGVGFETFNESALEALTEITIRYLRDLGKAASFYARLAGRTECNVFDVIQGLEDL 96          
BLAST of mRNA_S-ischiensis_contig89.20365.1 vs. uniprot
Match: A0A6P6G2X3_ZIZJJ (Transcription initiation factor TFIID subunit 8 n=1 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P6G2X3_ZIZJJ)

HSP 1 Score: 63.2 bits (152), Expect = 3.950e-9
Identity = 29/76 (38.16%), Postives = 46/76 (60.53%), Query Frame = 1
Query:   85 GSDTFARSVTRQAVAHVCLALGFDDTTSGCLETMTDVVRHYVESMGRAAADHARRAGRTEVNLPDVLDALQQMREP 312
            G D +A+++ + AVA +C   GF       LET++D+   Y  ++G+AA D+A  AGRTE N+ D++  L+ M  P
Sbjct:   22 GGDEYAQAIAKIAVAQICEKEGFQTFQPSALETLSDIAVRYTRNIGKAAHDYANLAGRTECNVFDIIQGLEDMGLP 97          
BLAST of mRNA_S-ischiensis_contig89.20365.1 vs. uniprot
Match: A0A2K2ATA0_POPTR (Transcription initiation factor TFIID subunit 8 n=3 Tax=Populus TaxID=3689 RepID=A0A2K2ATA0_POPTR)

HSP 1 Score: 62.8 bits (151), Expect = 5.440e-9
Identity = 31/74 (41.89%), Postives = 47/74 (63.51%), Query Frame = 1
Query:   91 DTFARSVTRQAVAHVCLALGFDDTTSGCLETMTDVVRHYVESMGRAAADHARRAGRTEVNLPDVLDALQQMREP 312
            D FAR++ + AVA +C ++GF       LET+TDV   Y+ ++G+AA   A  AGRTE N+ DV+  L+++  P
Sbjct:   28 DEFARAIGKIAVAQMCESMGFQSFQQSALETLTDVTTWYIRNIGKAAQLCANLAGRTEGNVFDVIQGLEELGLP 101          
BLAST of mRNA_S-ischiensis_contig89.20365.1 vs. uniprot
Match: A0A7J7DVL3_TRIWF (Transcription initiation factor TFIID subunit 8 n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7DVL3_TRIWF)

HSP 1 Score: 62.4 bits (150), Expect = 7.210e-9
Identity = 28/75 (37.33%), Postives = 46/75 (61.33%), Query Frame = 1
Query:   82 TGSDTFARSVTRQAVAHVCLALGFDDTTSGCLETMTDVVRHYVESMGRAAADHARRAGRTEVNLPDVLDALQQMR 306
            +G+D F R+V++ AVA +C ++GF       L+ + D+   Y+   G+AA  +A  AGRTE NL DV+  L+ ++
Sbjct:   19 SGADEFGRAVSKVAVAQICQSVGFQGFKESALDALADITIRYLRDQGKAARFNANLAGRTECNLFDVIQGLEDLK 93          
BLAST of mRNA_S-ischiensis_contig89.20365.1 vs. uniprot
Match: A0A4U5PTR8_POPAL (Transcription initiation factor TFIID subunit 8 n=1 Tax=Populus alba TaxID=43335 RepID=A0A4U5PTR8_POPAL)

HSP 1 Score: 62.0 bits (149), Expect = 9.530e-9
Identity = 28/71 (39.44%), Postives = 44/71 (61.97%), Query Frame = 1
Query:   91 DTFARSVTRQAVAHVCLALGFDDTTSGCLETMTDVVRHYVESMGRAAADHARRAGRTEVNLPDVLDALQQM 303
            D FAR++ + AVA +C  LGF       LE ++DV   Y+ ++G+ A  HA  AGRTE N+ DV+  ++++
Sbjct:   28 DEFARAIAKVAVAQMCETLGFQSFQQSALEKLSDVTTWYIRNIGKTAQFHANLAGRTEGNVFDVIQGMEEL 98          
BLAST of mRNA_S-ischiensis_contig89.20365.1 vs. uniprot
Match: A0A2P5BBQ6_PARAD (Transcription initiation factor TFIID subunit 8 n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5BBQ6_PARAD)

HSP 1 Score: 61.6 bits (148), Expect = 1.370e-8
Identity = 27/74 (36.49%), Postives = 48/74 (64.86%), Query Frame = 1
Query:   82 TGSDTFARSVTRQAVAHVCLALGFDDTTSGCLETMTDVVRHYVESMGRAAADHARRAGRTEVNLPDVLDALQQM 303
            +G D FA+++ + AVA +C + GF    +  LET++D+   Y+ S+G+ A  +A  AGRTE N+ D++ +L+ +
Sbjct:   18 SGGDDFAQAIAKIAVAQICESEGFQAFQNSALETLSDIAVRYIASIGKNAHSYANLAGRTECNVFDIIQSLEDL 91          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig89.20365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1V5_9PHAE1.010e-2555.43BTP domain-containing protein (Fragment) n=1 Tax=E... [more]
A0A7S2WV84_9STRA2.090e-1440.66Transcription initiation factor TFIID subunit 8 n=... [more]
A0A1J6IH49_NICAT9.800e-1038.36Transcription initiation factor tfiid subunit 8 n=... [more]
UPI000904A0A12.310e-938.36transcription initiation factor TFIID subunit 8-li... [more]
A0A2R6Q9L7_ACTCC3.920e-939.44Transcription initiation factor TFIID subunit 8 n=... [more]
A0A6P6G2X3_ZIZJJ3.950e-938.16Transcription initiation factor TFIID subunit 8 n=... [more]
A0A2K2ATA0_POPTR5.440e-941.89Transcription initiation factor TFIID subunit 8 n=... [more]
A0A7J7DVL3_TRIWF7.210e-937.33Transcription initiation factor TFIID subunit 8 n=... [more]
A0A4U5PTR8_POPAL9.530e-939.44Transcription initiation factor TFIID subunit 8 n=... [more]
A0A2P5BBQ6_PARAD1.370e-836.49Transcription initiation factor TFIID subunit 8 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig89contigS-ischiensis_contig89:437838..438761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score65.5
Seed ortholog evalue1.6e-08
Seed eggNOG ortholog4432.XP_010258025.1
KEGG koko:K14649
KEGG Pathwayko03022,map03022
EggNOG free text desc.Transcription initiation factor TFIID subunit
EggNOG OGs37K2F@33090,3G9QF@35493,KOG2389@1,KOG2389@2759
COG Functional cat.K
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBromodomain transcription factor
Ec32 orthologEc-12_008490.1
Exons2
Model size380
Cds size300
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig89.20365.1prot_S-ischiensis_contig89.20365.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig89 437838..438683 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817361.6171477-CDS-S-ischiensis_contig89:437837..4379121622817361.6171477-CDS-S-ischiensis_contig89:437837..437912Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 437838..437912 -
1695741056.667658-CDS-S-ischiensis_contig89:437837..4379121695741056.667658-CDS-S-ischiensis_contig89:437837..437912Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 437838..437912 -
1622817361.628351-CDS-S-ischiensis_contig89:438458..4386831622817361.628351-CDS-S-ischiensis_contig89:438458..438683Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 438459..438683 -
1695741056.678012-CDS-S-ischiensis_contig89:438458..4386831695741056.678012-CDS-S-ischiensis_contig89:438458..438683Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 438459..438683 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817361.6394765-UTR-S-ischiensis_contig89:438683..4387611622817361.6394765-UTR-S-ischiensis_contig89:438683..438761Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 438684..438761 -
1695741056.694125-UTR-S-ischiensis_contig89:438683..4387611695741056.694125-UTR-S-ischiensis_contig89:438683..438761Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 438684..438761 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig89.20365.1

>prot_S-ischiensis_contig89.20365.1 ID=prot_S-ischiensis_contig89.20365.1|Name=mRNA_S-ischiensis_contig89.20365.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=100bp
MTGSDTFARSVTRQAVAHVCLALGFDDTTSGCLETMTDVVRHYVESMGRA
AADHARRAGRTEVNLPDVLDALQQMREPLSWRDLQAFAFLEPDEGSGDAS
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mRNA from alignment at S-ischiensis_contig89:437838..438761-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig89.20365.1 ID=mRNA_S-ischiensis_contig89.20365.1|Name=mRNA_S-ischiensis_contig89.20365.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=924bp|location=Sequence derived from alignment at S-ischiensis_contig89:437838..438761- (Schizocladia ischiensis KU_0333)
GGGTCAGGACGCAGCTCAGTGAGCAGTGCCGCTCGGGGGCCTTAGCGTTT CGGCGAGGGTTCCTGCTGAGAGGGAGGGATGACGGGAAGTGACACGTTCG CGAGGTCGGTCACTCGACAGGCGGTCGCGCACGTATGCCTCGCGCTCGGG TTCGACGACACGACGTCGGGCTGCCTCGAGACCATGACGGACGTGGTCCG CCACTATGTGGAGAGTATGGGCCGGGCCGCCGCCGACCACGCGAGGCGGG CGGGACGGACCGAGGTCAACCTGCCAGACGTTCTGGACGCTCTTCAACAA ATGGTGCGTGGCCCTTCGCCCTGAACACGCTCCAGCGTTTTGCGTACCCG GTCAGCTCATGCGGTCTATGCACCTCAGCATGATCTTGCTTGTGTATGCG GTGACGCAACTGCCCCTGCACGCATGGCACCCCTTCCCCATGTCCGCCAG CCCTCTTTTTTTGCTGGAGGCACACCCCTCCACATGGTTGTCGTGAGATG AATCCCTTCACTTTGCCTCACCGCCCCAATGAAGCAGCGTCGATGAAAAC GATTGGTAGAATGGACAGACGACCCGGGAGCTTGTTTGGCGGCTCGCGGC ATAAATTCATTTGTCATTTGTTTCACACGATGGGCGGCACTTGCTCTATA AATCTTCCCTATGAAGCCAACAACTCAGGCAACACAGCCACGGCCGCAGC CATGCGCGTGTTGCAAAGCTTTTAACCCCCCCCGCACCCAGTGAAGCCAT GGGTATTCTCCTGTTTTGGGAACATAGACCCCCCCCCCCCCAACACACAT ATACACACACACACACGCGCGCACGCACCCCCCACCCACCCCTCTGTAGC GGGAGCCCCTCAGCTGGCGCGACCTGCAAGCCTTTGCCTTTCTAGAGCCG GATGAAGGCTCTGGAGATGCCAGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig89:437838..438761-

>mRNA_S-ischiensis_contig89.20365.1 ID=mRNA_S-ischiensis_contig89.20365.1|Name=mRNA_S-ischiensis_contig89.20365.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=600bp|location=Sequence derived from alignment at S-ischiensis_contig89:437838..438761- (Schizocladia ischiensis KU_0333)
ATGACGGGAAGTGACACGTTCGCGAGGTCGGTCACTCGACAGGCGGTCGC
GCACGTATGCCTCGCGCTCGGGTTCGACGACACGACGTCGGGCTGCCTCG
AGACCATGACGGACGTGGTCCGCCACTATGTGGAGAGTATGGGCCGGGCC
GCCGCCGACCACGCGAGGCGGGCGGGACGGACCGAGGTCAACCTGCCAGA
CGTTCTGGACGCTCTTCAACAAATGATGACGGGAAGTGACACGTTCGCGA
GGTCGGTCACTCGACAGGCGGTCGCGCACGTATGCCTCGCGCTCGGGTTC
GACGACACGACGTCGGGCTGCCTCGAGACCATGACGGACGTGGTCCGCCA
CTATGTGGAGAGTATGGGCCGGGCCGCCGCCGACCACGCGAGGCGGGCGG
GACGGACCGAGGTCAACCTGCCAGACGTTCTGGACGCTCTTCAACAAATG
CGGGAGCCCCTCAGCTGGCGCGACCTGCAAGCCTTTGCCTTTCTAGAGCC
GGATGAAGGCTCTGGAGATGCCAGCCGGGAGCCCCTCAGCTGGCGCGACC
TGCAAGCCTTTGCCTTTCTAGAGCCGGATGAAGGCTCTGGAGATGCCAGC
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