mRNA_S-ischiensis_contig89.20363.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig89.20363.1
Unique NamemRNA_S-ischiensis_contig89.20363.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig89.20363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig89contigS-ischiensis_contig89:412425..417594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1459
Cds size744
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig89.20363.1prot_S-ischiensis_contig89.20363.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig89 413042..417496 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817359.3453412-UTR-S-ischiensis_contig89:412424..4130411622817359.3453412-UTR-S-ischiensis_contig89:412424..413041Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 412425..413041 -
1695741054.9753706-UTR-S-ischiensis_contig89:412424..4130411695741054.9753706-UTR-S-ischiensis_contig89:412424..413041Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 412425..413041 -
1622817359.3991542-UTR-S-ischiensis_contig89:417496..4175941622817359.3991542-UTR-S-ischiensis_contig89:417496..417594Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 417497..417594 -
1695741055.03081-UTR-S-ischiensis_contig89:417496..4175941695741055.03081-UTR-S-ischiensis_contig89:417496..417594Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 417497..417594 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817359.3563926-CDS-S-ischiensis_contig89:413041..4134741622817359.3563926-CDS-S-ischiensis_contig89:413041..413474Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 413042..413474 -
1695741054.9857912-CDS-S-ischiensis_contig89:413041..4134741695741054.9857912-CDS-S-ischiensis_contig89:413041..413474Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 413042..413474 -
1622817359.3669786-CDS-S-ischiensis_contig89:415083..4151871622817359.3669786-CDS-S-ischiensis_contig89:415083..415187Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 415084..415187 -
1695741054.9965558-CDS-S-ischiensis_contig89:415083..4151871695741054.9965558-CDS-S-ischiensis_contig89:415083..415187Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 415084..415187 -
1622817359.377522-CDS-S-ischiensis_contig89:416317..4165211622817359.377522-CDS-S-ischiensis_contig89:416317..416521Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 416318..416521 -
1695741055.0078907-CDS-S-ischiensis_contig89:416317..4165211695741055.0078907-CDS-S-ischiensis_contig89:416317..416521Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 416318..416521 -
1622817359.3880906-CDS-S-ischiensis_contig89:417493..4174961622817359.3880906-CDS-S-ischiensis_contig89:417493..417496Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 417494..417496 -
1695741055.0193202-CDS-S-ischiensis_contig89:417493..4174961695741055.0193202-CDS-S-ischiensis_contig89:417493..417496Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 417494..417496 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig89.20363.1

>prot_S-ischiensis_contig89.20363.1 ID=prot_S-ischiensis_contig89.20363.1|Name=mRNA_S-ischiensis_contig89.20363.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=248bp
MAATTDTAVNVHNPATTVVAVPAVPPNAYVAEVGLPLDNAYGISEEPKVS
VVWASWSIGGLVVVLGFIEVIVAAMVFHEWGNIGAFWAGVLSLFAGVAAL
TLRRGRPRGGRFTGMVITLSVLAFLSILIALFYMEGLVYQVGCRAVRWLA
CCVSVFTGGFRDAERGSCRVVGYGGSKLLVLVDSVLWYCASKWPAGSRRR
LSSLLFHHLSEYGRTDGCPSAATLFMKPAPSQSRCTVNGLATMASTT*
back to top

mRNA from alignment at S-ischiensis_contig89:412425..417594-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig89.20363.1 ID=mRNA_S-ischiensis_contig89.20363.1|Name=mRNA_S-ischiensis_contig89.20363.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5170bp|location=Sequence derived from alignment at S-ischiensis_contig89:412425..417594- (Schizocladia ischiensis KU_0333)
GACCCTTGCCCGGTGCACGTTCCGAGAGCTCTGGTCAAAGCACAGCCCGA
GGGGGAACGGCTGGCATCCGTGGACGGGAGCTGCGTGTGACAGGCTTCAT
GGTGAGCAGCCGACGGGGCCAACAGTCCGCCTTAGCCACAATTGGTGCAC
CTTCTTTGCGGGCCCGCAAACGGCGTTCCGCAAGCACGTGGCGCAGGCCC
AACGTGGGACCCCCCTGAATTGAAAGTGTGGCCGTCGCTTCGTCTGGCCG
CTCATGGATTTGCCCGGACACCCGGTTTCGCCCTGGTCGGACGGTGTTTT
GGGGAAATTTGAATGTATCGGGTGTTCTCCTTTGCCCTCGCGTGCGTGTC
GCCTGGGTAGCTACAGCGCAATTCTATTTTGAGAGGTTCTGGCTTCCTGC
CGCGCAGGGAACCAATTACCCCCGGCTCGCATTGACAGGAGGTGTTGCCA
AAGCCAATTGGTCCACCTGACCGAGAAGGTTACCCGACGCGTACACGTAG
CCCCCACCCCTACTTTCCAGCTTGACCAGAGTCATCAATGGCGTATATTC
GGCAAATATAAACATTGAGCAAGCGATCAGCGGGTGTTATTTCGTATCCA
GCGTTAACAACGTCATAGGGACTGCGATCCGTGCGTCCACTTGACACTGG
TACGATGCAACGCGCTGTGTGGGCGACTGGCCGAAAACTCGAGGCACCCT
TACAGTAACCTGCTTTATGCTGTCTTATTTGCTGCGCGATATGCCCTAGT
TATGTACAGCACAGGTGTAGAGTAGATTTGTTCGCCTGGTACAATATTGG
TAACTCCTCTCGGGGCTACGGCAAGCACGACATGAGCAACATGCTACCTG
TAGTGTATGTATGCGTACAGTAGATATGTGTGCTTGGAGCGGTTTGCACA
GCCTGCCGAGTATTGTTTTGTTGTGCAGGCTGCCGCAACACCGGGGCCAA
GCCCTGGTGTGGCGGAGGTCGGCGGGTGTCCAGGAACCGTTCGCACCGAA
CCGCGCCGAAAATAATAGCCGCCTCACAAACCGTGATGTGATTAACACTT
GCTGCACGATTGTTCCATGGCAGGCTGCCACGACGGACACCGCGGTGAAC
GTGCACAACCCCGCGACAACTGTGGTCGCGGTACCCGCCGTACCCCCCAA
CGCGTACGTGGCGGAGGTGGGGTTGCCATTAGACAATGCCTATGGGATCT
CCGAGGAACCCAAGGTGTCGGTGGTGTGGGCCTCCTGGTCGATCGGGGGG
CTGGTGGTGGTCCTCGGTTTCATTGAGGTGAGTGGTGGTGGTGGTGGTGG
TGGTGGTGGGTGCAGTGGTACTGATAGGTTCTCATACTTTAAGAGGCCAT
TGCAGTGCGGGCAACAATCGAGAGCAACGATTGTTGGTATTTTTGCTGGT
ATGAGGTATGGCGTGTCGGCATCACTTGATTGGAAACACCTGTTGATTGG
AGCTGTGAACTGGCACGGCCGGCCGGTTGAAATTGTACCGGTATCGGAGC
CGTTCGGTGCAGCCGTTTCTTTTGGCGTTGAGTTGTCGTGTGATAACGGC
TATAGAAGTTTTTCGGCCGAAACCAGCGATAACGGTAATGTCGCCGTCCA
CCGGCTAGTTCGAGCGTCGAAATATGCACGATCTCAATGGAGAAAAGCAA
TGGAGCGACCGGGCAAGGCTTCGGCCGGTTCAACCATTGGCCGGTTAACC
GGAACCAACCGGCCAGAACCGGCTCCGATTCACAGATCTATGAATAAATG
TGCATGACTTTGAGGGAGAAATTGCTGGCGAGGCTTCGGCCGGTTTAGCC
AGACGGCCGGTTGACGCAACCGACATGCGAAAACCGGCTCCGGTGCACAG
CTCTTACTCTTGATACAGCGTACAGGAACAACAGGCTGGGTTGAAGTCTG
CAGTACATGACCTGTTGATGTACTTCGAAGTACTGCAGAGTACCGAGGCA
TGCACCGATCCCAGAGTGTACTCAGAGTACTTATGCGTGTGCACAGCCAC
GTGGCCACAACGTGCTGCAACGGCGACCAGTTGCAGCCACGGTGTGATTT
GTTGGTACAAGTTGTGGACTCGTTGGGGTAACATGTCTGCGTATGCCCTG
TCCCTGCTGACACGCACTCCCGCAGGTATGCGTTGCGGTTGTCTCTCCCT
GAGCTACGCCACCGCCAGCGGCCCAGCCCCTCCCCCCCCCCCCCCCCCCC
CCCACATGCTCTTCCTCCTCCTCCTCCTCCCCTCCCCCACACGTGCTTTG
CCTGTCTGCTTTCCGAGTGCAGGAGGGTCCGAGCTGTTGAATTCATACTG
ATTTAGTCACATCTCGGTTGTGTTTTTGGTCTCCAATGTGTTTTTGGTCT
CCAATGCCCTGTCTGTCCCCTTGACGAACTTGCCAATCAATCAATGTGAT
TGGCCAGGTGATTGTGGCCGCGATGGTCTTCCATGAGTGGGGCAACATCG
GGGCATTCTGGGCTGGAGTGCTCTCGCTATTTGCGGGGGTGGCGGCTTTG
ACATTGCGCAGGTACTGTGGGCACACGACAATGCACTTATACAGGTCTAT
GGCGGTTGACCTACTGTAAATTGTCCCAAAGCCTGGCTCCAATCCACACC
GTGTTCGTTGCACGGATAGTGTGCCGCGAAATTGGTTGCCGGGCATGCTT
CAACCTTGACTAGCACATGCCGACACTGTACAGAGTAGGTACTCTACAGT
AGTGACTGCAGTGCACTGCTGCACTGTACTAGTACATGCTATTGTGCTGT
ATGCAGGAAATCTTCACTTGCTTCGAAGTAGAACAATGGTTGGGGAATGG
TCTCGGGACTCCAGCAAGTATGCTGAGCACAATGCGAGTCATATGTATAC
GTACGATGCACGAAGGACTTCTTAACTTTGTACTCGAGTGCCTGAAGTAT
ATGTAAAATGTAGAAGGGCCTGCTCCGTCTCGGCCGACGCGTGTTGTCAA
TGGGTGCGGGAGTACGGCAAGCACTACGTGAGTGCATATTTACCCCGAAG
TACTCTCCGTGAAGGCCTTCAGACAAGAGGTACACTAGTCTCTTGACGAT
ATGACAGTGACTACTGCTAGTACTTGGCAGTATGTAGTACGTGACTATCG
GTATTGCATGTGCATTAGCTGACAACGCCTGGTATGCCGAGTGAGGGTTA
GAGCTCTACAGTAGTGCTACGTATATGTTGACATACGAGTGTATGTGTGT
ACAAATGCCGGACACGGCTACCCCGTGTCCTGTGCAATGCCACCAACCGT
CGGCCCTGTATACTCCGTACTGTGCAAGGTTATGTCGCAAGACAAGCCAA
TACGTACACACATATACACTGTACAGTGCCACCGATCAGCCCCGGCAGGG
TGAAGGGTAGCCTTTCAACCACTGGCATCTAATTAGTCAAGTGCTAATTG
CAGTAGGTGAAATAGACGGCCATGTTCACGACCCAAGACAGCATTAGGGA
TGATTGAACCGTGCCAGGCTGCTATCGGAACTACCAGGGGAGGTTGTGAG
CATGCAGAAATCTGCGACAAGGAGTTTTCCAGTCGGTCAAATTTGCAAAA
AACAGTCGAGTTACACGTATCCCCGACCTTTGGTGGCCTTCAGTCCGCCA
ACGAAATGAGACGGTTACGTACTACAAACTCGGTTGGCCGGCGAAACATT
TTCACCGCGCGGGTTGGCCTTTAGCAAAGAATGGATTCTGCTGTGACGCT
AGAGCAGAGGACAGGCACACTGGGCCCGCCTCGGCCCCTCAAGCACCGTG
CCAAGGGCTCGATAGTCCGTGGAGCGATCTCATGCAAGAACTCTGCTTGG
GATGTGCGGCACCAGAGACTGCCCCCCTGCCACCGCCTTGTGTTTCTGTG
CTTCTCGTGCGCTGCGAGTAACGCATGGTGAGGTCCCAGTCGGAACTCGC
CGGCACTCGTTTGTGTAGTTTCGCTCTACTTAGCAATTGTAGTGGACTTC
AACTGTAGACTGCTTGGGTTACTGAACGCGCGACTCCTCGGCTAGTGTAT
CTTGTCGCTGAAAACATTGCCTTATGCATGCCCCCAAACTGCTGGGAATC
CCGATCGTACAAACCTTGCGACAAGGACAGTGGTTGATTTTGCGGGTGCT
TGTGATGTTGTTCGGCGCAGGGGCAGGCCGCGGGGGGGGCGTTTCACGGG
CATGGTCATCACGCTCTCGGTTCTGGCCTTCCTGAGCATCCTCATCGCCC
TCTTCTACATGGAAGGGCTCGTCTATCAGGTGGGTTGCCGTGCAGTGAGA
TGGCTTGCTTGTTGTGTGTCAGTCTTCACTGGGGGGTTCAGAGATGCGGA
GAGGGGCAGTTGCCGTGTCGTAGGATATGGCGGCTCCAAGTTGTTGGTGC
TGGTGGATAGCGTGCTGTGGTACTGCGCTTCGAAGTGGCCCGCAGGAAGT
AGAAGGCGTCTGTCTTCCCTCCTTTTCCATCATCTGTCAGAGTATGGCCG
TACTGATGGCTGCCCATCTGCTGCTACCTTATTCATGAAACCTGCTCCGT
CTCAGTCTAGGTGTACGGTCAATGGTCTCGCGACTATGGCCAGCACAACG
TGAGTAAATAAAGGTATGTATGTGTGATCATTGTGACACGTTGGTTGGAC
CCGTTGTGATCACATATTATGAGTATACTGCCACGTATGTGTGACGTTGT
TTGGCTTGACAGGCCTGTGAAGCAGCCGGTACGCCTACACGTCACTGACT
CCCAAGTACTTTACACTGGTACCTCCGAGTGCTTAGGGTACTACGCTACT
TCCAAGTACATGTGTGCTCCAGATTCCTTGTGACCTGTCGGTGTAAAACG
GTAACCTAGTGCAGTGTATAGCTTGGGAAATGCCCATGCCACTATGGGCA
GGCGGCCCTTAGCGGAGGGGGGCGTGGACTGGGATGTGTGGTGACCTGCT
ACATAGCAGTGCAGTGCGTAACTTGTTGTCCTTGTTGTGGCGGCCGGCAC
ATTCGTAGACTGCTTCTTCAAGAATAAAGAAAATTTCGCGCGTTGCTATC
ACCTTTCTGTGCGGCCTAACCTAGTGTTCCTCCCATTGCCATGTACACTG
TAGTAACAGGAAGAACGCAGGGCGAGGCGCAGGCCACGTCGCTAAAGACC
TGCTATGTAGTACGAAGATAAGCTTAGAGGATGACTAGCGGCCTCAATGC
TGTGGTGTATTATAGGGAAC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig89:412425..417594-

>mRNA_S-ischiensis_contig89.20363.1 ID=mRNA_S-ischiensis_contig89.20363.1|Name=mRNA_S-ischiensis_contig89.20363.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1488bp|location=Sequence derived from alignment at S-ischiensis_contig89:412425..417594- (Schizocladia ischiensis KU_0333)
ATGATGGCTGCCACGACGGACACCGCGGTGAACGTGCACAACCCCGCGAC
AACTGTGGTCGCGGTACCCGCCGTACCCCCCAACGCGTACGTGGCGGAGG
TGGGGTTGCCATTAGACAATGCCTATGGGATCTCCGAGGAACCCAAGGTG
TCGGTGGTGTGGGCCTCCTGGTCGATCGGGGGGCTGGTGGTGGTCCTCGG
TTTCATTGAGGCTGCCACGACGGACACCGCGGTGAACGTGCACAACCCCG
CGACAACTGTGGTCGCGGTACCCGCCGTACCCCCCAACGCGTACGTGGCG
GAGGTGGGGTTGCCATTAGACAATGCCTATGGGATCTCCGAGGAACCCAA
GGTGTCGGTGGTGTGGGCCTCCTGGTCGATCGGGGGGCTGGTGGTGGTCC
TCGGTTTCATTGAGGTGATTGTGGCCGCGATGGTCTTCCATGAGTGGGGC
AACATCGGGGCATTCTGGGCTGGAGTGCTCTCGCTATTTGCGGGGGTGGC
GGCTTTGACATTGCGCAGGTGATTGTGGCCGCGATGGTCTTCCATGAGTG
GGGCAACATCGGGGCATTCTGGGCTGGAGTGCTCTCGCTATTTGCGGGGG
TGGCGGCTTTGACATTGCGCAGGGGCAGGCCGCGGGGGGGGCGTTTCACG
GGCATGGTCATCACGCTCTCGGTTCTGGCCTTCCTGAGCATCCTCATCGC
CCTCTTCTACATGGAAGGGCTCGTCTATCAGGTGGGTTGCCGTGCAGTGA
GATGGCTTGCTTGTTGTGTGTCAGTCTTCACTGGGGGGTTCAGAGATGCG
GAGAGGGGCAGTTGCCGTGTCGTAGGATATGGCGGCTCCAAGTTGTTGGT
GCTGGTGGATAGCGTGCTGTGGTACTGCGCTTCGAAGTGGCCCGCAGGAA
GTAGAAGGCGTCTGTCTTCCCTCCTTTTCCATCATCTGTCAGAGTATGGC
CGTACTGATGGCTGCCCATCTGCTGCTACCTTATTCATGAAACCTGCTCC
GTCTCAGTCTAGGTGTACGGTCAATGGTCTCGCGACTATGGCCAGCACAA
CGTGAGGGCAGGCCGCGGGGGGGGCGTTTCACGGGCATGGTCATCACGCT
CTCGGTTCTGGCCTTCCTGAGCATCCTCATCGCCCTCTTCTACATGGAAG
GGCTCGTCTATCAGGTGGGTTGCCGTGCAGTGAGATGGCTTGCTTGTTGT
GTGTCAGTCTTCACTGGGGGGTTCAGAGATGCGGAGAGGGGCAGTTGCCG
TGTCGTAGGATATGGCGGCTCCAAGTTGTTGGTGCTGGTGGATAGCGTGC
TGTGGTACTGCGCTTCGAAGTGGCCCGCAGGAAGTAGAAGGCGTCTGTCT
TCCCTCCTTTTCCATCATCTGTCAGAGTATGGCCGTACTGATGGCTGCCC
ATCTGCTGCTACCTTATTCATGAAACCTGCTCCGTCTCAGTCTAGGTGTA
CGGTCAATGGTCTCGCGACTATGGCCAGCACAACGTGA
back to top