mRNA_S-ischiensis_contig89.20362.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig89.20362.1
Unique NamemRNA_S-ischiensis_contig89.20362.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig89.20362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig89contigS-ischiensis_contig89:399167..404141 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons4
Model size2258
Cds size738
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig89.20362.1prot_S-ischiensis_contig89.20362.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig89 399322..402776 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817361.5205798-UTR-S-ischiensis_contig89:399166..3993211622817361.5205798-UTR-S-ischiensis_contig89:399166..399321Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 399167..399321 +
1695741056.6189866-UTR-S-ischiensis_contig89:399166..3993211695741056.6189866-UTR-S-ischiensis_contig89:399166..399321Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 399167..399321 +
1622817361.5809267-UTR-S-ischiensis_contig89:402776..4041411622817361.5809267-UTR-S-ischiensis_contig89:402776..404141Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 402777..404141 +
1695741056.6591249-UTR-S-ischiensis_contig89:402776..4041411695741056.6591249-UTR-S-ischiensis_contig89:402776..404141Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 402777..404141 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817361.5349336-CDS-S-ischiensis_contig89:399321..3996141622817361.5349336-CDS-S-ischiensis_contig89:399321..399614Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 399322..399614 +
1695741056.6268795-CDS-S-ischiensis_contig89:399321..3996141695741056.6268795-CDS-S-ischiensis_contig89:399321..399614Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 399322..399614 +
1622817361.5462196-CDS-S-ischiensis_contig89:399961..4001421622817361.5462196-CDS-S-ischiensis_contig89:399961..400142Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 399962..400142 +
1695741056.6348767-CDS-S-ischiensis_contig89:399961..4001421695741056.6348767-CDS-S-ischiensis_contig89:399961..400142Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 399962..400142 +
1622817361.558116-CDS-S-ischiensis_contig89:401749..4018591622817361.558116-CDS-S-ischiensis_contig89:401749..401859Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 401750..401859 +
1695741056.6429942-CDS-S-ischiensis_contig89:401749..4018591695741056.6429942-CDS-S-ischiensis_contig89:401749..401859Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 401750..401859 +
1622817361.5697963-CDS-S-ischiensis_contig89:402622..4027761622817361.5697963-CDS-S-ischiensis_contig89:402622..402776Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 402623..402776 +
1695741056.651134-CDS-S-ischiensis_contig89:402622..4027761695741056.651134-CDS-S-ischiensis_contig89:402622..402776Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 402623..402776 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig89.20362.1

>prot_S-ischiensis_contig89.20362.1 ID=prot_S-ischiensis_contig89.20362.1|Name=mRNA_S-ischiensis_contig89.20362.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=246bp
MASTQGPELSQSPLEDASHRRAPEVLHVPRKKSPKSMEFETQSRGSGDAS
KGGQENGPSQTSVTALRVLGALLFLVGVMQVIVGGMLFAEWGELVDRRGN
VGSFWVGLLAIMTGAAATRAQGNQPKGGSCASIAVSLAVVTMLTAVVSVL
FLEGGVYSVMMEVEGCETSMETTDFGGRMGCSRDCTCIANDGTTWCVSYA
GDCEDMTDTEDLLLTSTISLSVAAVVAMALTFSGCSAALCSQRKS*
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mRNA from alignment at S-ischiensis_contig89:399167..404141+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig89.20362.1 ID=mRNA_S-ischiensis_contig89.20362.1|Name=mRNA_S-ischiensis_contig89.20362.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4975bp|location=Sequence derived from alignment at S-ischiensis_contig89:399167..404141+ (Schizocladia ischiensis KU_0333)
GTTTACGCGAATCGACCTCGCCGCAAATAGGACGACCGGGGGATTCTGCC
GGTCTCATCCTCTCTCTATGGCTCGGATGGGGTCGAGGGCTCTCCTTTGC
CCAGGACGTATTGTTGCGCAACTCTCCGACCTGGACCACATTGCACGGAG
CTCCCATGGCATCAACGCAGGGCCCCGAATTGTCCCAGTCGCCACTCGAG
GACGCTTCACACAGACGGGCGCCGGAGGTCCTGCACGTGCCTCGTAAAAA
GAGCCCCAAAAGCATGGAGTTCGAGACGCAATCGCGTGGATCAGGCGACG
CTTCTAAGGGAGGCCAAGAGAACGGACCGAGCCAGACCTCGGTCACCGCT
TTGAGGGTACTGGGAGCGTTGCTGTTCCTTGTGGGTGTGATGCAGGTCAT
CGTGGGGGGGATGCTCTTCGCTGAGTGGGGTGAGCTTGTCGATCGGCGAA
CCCGTCAGAGCGCCGCGAGCGTGGCTAGCCCTGCCGCTTGCGAGAATGGA
ACGGGCTCGAGACGCTCAATTTGCCCTTGCATCTGCTCCCACCGTTCCAC
CCTCAGCTCCCTCGTGCCCTCAAACGACATGCGGCCAATGCGGTTGACCC
CGGGTCCTTGCCAACTCCAAAGTGACTCGAGTTTCTCAGTGTGACCACTG
GTTCCGCAGTCCCTGCATCCTGCCAGGGCAGTGCCATCTTGCTGACACTG
CCACGGACCGTTGTGCCACAGCAATCATTCCTCACGCCCTGTTCCGCCCT
TGTACTTTTGTGGACTCCTCCGCAACGGCCCTTCCCACTCGGCCCAGGCA
ATGTTGGCTCCTTCTGGGTGGGCCTTCTGGCCATAATGACCGGCGCGGCG
GCGACAAGGGCACAGGGCAACCAGCCCAAGGGGGGGAGCTGTGCAAGTAT
TGCCGTGTCGCTAGCTGTCGTGACGATGTTGACGGCAGTGGTTTCCGTCC
TCTTCCTTGAAGGGGGAGTGTACTCGGTGAGCGAGAGAGAAGGACAGAGA
GAAATAGATAGAAATATGTGTGAGCACACGCGTGCATGCGTGCACGTGTG
CGTGTGTGTGTCTGCATCGGCATCTGCTTGCTGTGACTTGGTTGTCTCTC
TTGTGGCTTGCCCGTGTGCTTTGCGCGTGTCTGTCACCGTGTCCGTGCCG
GGGTGTGTGCCTGTGTGCATGTCTGTGTGTGTCCCTTGCATGCGCTGCTC
TGTGTGCCTGTGTGTATGGATCTGTGTATATCTGCGTATAGCACTGTGCG
CCTCTGTATATGTTACAGTAGTATACATGTCCTCGTGTTTGGGGGGGGCG
GGGTACTTGAACACGACGCCTGCACGGCACAGACACCTGCACAACACACG
CGCGCACACGCACACACACACACACACTGTACAGGTGCGCACACGCCACA
CAACACAATGTGCACTGTCGCAAGAGGCACCACCGCCACGTGATGCACAT
ACAACAGTAGAGGTTGTCGAGGGCATGCCTTTACCGGAGAACGGGACTGC
GTGCCGGGGCTCGATCAGGGGGGACACTGTGCTCGCCTGTCCATCCAAAA
CGCACCAGCGCTGAAACCCGCCGCACCCCTCCCAAACGTCTTTTTACCTC
CCCATCCGTTCCTGCCTCACCTATTGTAGCACCGAAGCGAGCCGCATACT
GCAACCACCGCCCCCACAACAACAGACAAACTGGCGCCACTCCTTCCCCT
CCCCGGGGTCTTGACAGTTCTCAAGAGCGCTGCGCGGACTAGCATGGGGT
CTTGGGCGAGTCCCCGGCTCATCCGGTGACCGCTGTGCGGGGTCACTGGT
GCAAATTGGCGCAGTTGTCCAGACTCCGCCATCGGCCCCCAAATTCAAGA
GACAATTTTCACAAACCGGTTGCGGTTGCTCTTCGAAGTGCAGCGGTATG
CTATGGCAGTCCTGCTGGGTGTAACAGTGCACGAAGTTGCATTTACAACA
ACCCCCCCGAACCTCATTCGCGGCTGAGCCCTTTTTCGACGTCGTCGGGA
TGACAAGAAGTCTTGCCGGAAAGCCAAGCCAATGTGCCGGCCAATCGACG
CTGCCTTCTCTACCCGCAAGGGGACCTTGGTATCGAGACTATGTGTGAGT
ACTACTTAAGCCCTCAGGAACCACCAAGAAACACACACTCAAGTGGTGCG
CATAACTATTTCTTCAAAGTATACGCGAGAATTGTGAGTCTCTCTTGCCC
CTCATGCGCCACCCCCCCCCCAAAACAAACTGATCAATACGTATGACAGG
CGCCGACAAATCTATGCTCCTCTACGAGTACATCTATACACATACTCGAG
TATGTATATACCTTGAAGTAGGGCGCTTACGTGCCACCCACGTTAGCCGC
CTTTCAACAGTTCTGTGCCGACCGACCACCTCCTAAACCACCTTTGAACA
CCTGTGCGCCCTTTACTCCCTTGCCACATTTGTAGCAACTCCGCGCCGAC
TGCTCTTTAAACCCCTGGCACAGGAGATGATGGAGGTGGAGGGCTGCGAG
ACCTCCAACACCTGTGCGCCCTTTACTCCCTTGCCACATTTGTAGCAACT
CCGCGCCGACTGCTCTTTAAACTCCTGGCACAGGTGATGATGGAGGTGGA
GGGCTGCGAGACCTCCATGGAGACCACGGACTTTGGCGGCCGCATGGGGT
GCTCCCGGGACTGCACGTGTATCGCCAACGACGGCACCACCTGGTGAGTG
AGGCATAGCCTAGCTTGCCATGGCCATGCCGCATGACCGTATTGACTTTG
ACGGCCGTGGTGACGGCTTTGATCCTCAAATCTCTTCAGCACCAGCCCAC
TCTGCAGCCGTGCGCCAAGAAAGTGTACAGTACGCTTCCGTCCATCAAGG
AGATCTCGCTTCGCAGAGGATCCCGCCGCCCTTGCCTACTGTAGCAGCAC
CGCCTGAGCCAAAGCGGCTCACGTTTTCCCATGCATCAGTAGCCTCCAGG
GGGTTGTATACATGCCGGCAACTGGTGTCTCGCAGTACGATAGAACCGGC
TCAACCGGTTCACGTCTGCTGACAGTACCGAGTACGAAATACTTCAAGTA
CAGTACCACTGTAGTACCTCAGTTACTTGCATTCGAGAAGTGCCCCACTT
TTCACCCACATGGACTCACTCTTGCTCCTCCATGTCCCACGCACGTTTGC
CCCTGTCTCCCTACGTAAACTCCTTCAGCACTCATCATTTTTTCCCTGCT
CCCACCACTGCGCCCTTCCCCACCCCTGCCCTCCCCCCATCCCCCCCTCC
CTCCTTCCGGCCCTGCCTCCCTCCCTCCTGCCTTCCCTCAACCCCCGCTT
GGACCCCTCCTTCCCCCCTGCTCCCCCCGACCCGCTCCCTCAATCCCCGC
CTCCCCCTCCTCCGCCCCCTCCCTCCCGCCCCCGCCCCCCTTCCCCCCCT
CCCCCATTTCCCGCCTCCCTTGTCTCCCTGCCGCATGCCTCGGAACGCCT
GCCCAGGTGCGTGAGCTACGCCGGCGACTGCGAGGACATGACAGACACCG
AGGACCTGCTCCTGACCTCCACCATCAGCCTGTCCGTCGCTGCCGTGGTT
GCCATGGCACTCACGTTCTCCGGCTGCAGCGCCGCCCTCTGCAGCCAGCG
CAAGTCATGAGTACAGCGGCTGCGTACTCTCTTCTTCATGGCAGGCGCTG
TGAGGGGCCACAGAGCGGGGAAGAACTTACAAGGAGCGGCGGATCCCCAG
AGACGACAGGCGGGGCTGGGCAGCCGCGAGGGGAACACGCCGGAGTGACC
CCCGTGTCGGCAGCACCGCGGAGTTGCCGATGAGGACTCGAGTACTCAAA
ACTGTACAGTACATCTGTGTCGGGGACGTCGGCTGATTGTCTTGCCCGTA
GTTCGGTGTGGGCGTACCGTTCGGACTGACCCGCAGTTGCCAGCACTTGT
TGAACAAGGTGCTGCCTTCATTCGTCCCCCTGGTGAATGCGCGTTGGGGG
GGGCAGGGTAGGCCGGCGGTGGAATGGTACACCTAGCAGCATGTAGAGTA
TGTGAGCGCGTTGCAATGCTGTCTTCCCTGCCGCTGACAATTCCCGGCGC
GCCAACTCGCACCGTGATCGCGGCGAGATGGGCCCGACATTTGGCGCCCA
ATACTCGTCTCCCAAAAGGTCCCGAGGTGCGCTGCTACGGGGACCCTTTC
CTTTTTGTTTGTGTGGTTTTCTCTTGGTGTCTTCTGCCTCGTACATTTTT
TCCACCCCCCACCAGTGCCGTGATTGCGCTTTCCGCCGCTCGGCCTGATT
TGTACCTACGCAGTACACACCTGCTACAGAGAGTATGGCCTGCACTCCTC
GTGCAAGGGCCACTCGCCGCCTTTGCTTGTACAGCATGAAGCCCACGTTT
TGGTACTCGTCACCAAAAAGACAGCCTGCCGGGTCGGCGGCTTGCCCGAC
TCCGCGGCGCGAGCGTGTTGGCGAACTGGTTGGTGGCTGCTGCTGCATGT
GTTTTGCGTGTGAGCACATAGATCTGTATGTGCATGTGTGTGTGCGTGTG
TGAGTGTGTGCGCGTGTGCCTGCACGTGTGCGTACGTGCGTGCGTGCACT
GCCTTGGCGTCGCCGCCCCCACGCCCCGCCACGGGCAGGGCACACCCATG
GGGATTGCCGATGCGGCGCTGTGCCGGGCGCCCCCCCCAATCTATCCGGG
CCCTTCTGCTTCGTGGTTCCATTGAATTTGTGTCCTCCTCTGCCGGTCCG
TGTGGAGACCGCTTCTCGGCTCCGTGGAAAGTGTCCTCTTCGGTTGTTTC
TTTTTTTTGTTCCTCCTCCCACCCAAAGCAGGCCAGAACACACCCAACTG
TATGGTGCGCCACGCCCAAGGGAAGGAATTCATGCCCGTTGTTTTCCAGA
ATGCCCTGCTTGGGACTACTACTTGTAGGCTAGTACGATGTACCACTGAC
GTAGGATGTTTGTCTTTTGTGCTCAGTGCCACACACGGGAATAACTACTG
TAATACAATGTACTCATATACTCAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig89:399167..404141+

>mRNA_S-ischiensis_contig89.20362.1 ID=mRNA_S-ischiensis_contig89.20362.1|Name=mRNA_S-ischiensis_contig89.20362.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1476bp|location=Sequence derived from alignment at S-ischiensis_contig89:399167..404141+ (Schizocladia ischiensis KU_0333)
ATGGCATCAACGCAGGGCCCCGAATTGTCCCAGTCGCCACTCGAGGACGC
TTCACACAGACGGGCGCCGGAGGTCCTGCACGTGCCTCGTAAAAAGAGCC
CCAAAAGCATGGAGTTCGAGACGCAATCGCGTGGATCAGGCGACGCTTCT
AAGGGAGGCCAAGAGAACGGACCGAGCCAGACCTCGGTCACCGCTTTGAG
GGTACTGGGAGCGTTGCTGTTCCTTGTGGGTGTGATGCAGGTCATCGTGG
GGGGGATGCTCTTCGCTGAGTGGGGTGAGCTTGTCGATCGGCGATGGCAT
CAACGCAGGGCCCCGAATTGTCCCAGTCGCCACTCGAGGACGCTTCACAC
AGACGGGCGCCGGAGGTCCTGCACGTGCCTCGTAAAAAGAGCCCCAAAAG
CATGGAGTTCGAGACGCAATCGCGTGGATCAGGCGACGCTTCTAAGGGAG
GCCAAGAGAACGGACCGAGCCAGACCTCGGTCACCGCTTTGAGGGTACTG
GGAGCGTTGCTGTTCCTTGTGGGTGTGATGCAGGTCATCGTGGGGGGGAT
GCTCTTCGCTGAGTGGGGTGAGCTTGTCGATCGGCGAGGCAATGTTGGCT
CCTTCTGGGTGGGCCTTCTGGCCATAATGACCGGCGCGGCGGCGACAAGG
GCACAGGGCAACCAGCCCAAGGGGGGGAGCTGTGCAAGTATTGCCGTGTC
GCTAGCTGTCGTGACGATGTTGACGGCAGTGGTTTCCGTCCTCTTCCTTG
AAGGGGGAGTGTACTCGAGGCAATGTTGGCTCCTTCTGGGTGGGCCTTCT
GGCCATAATGACCGGCGCGGCGGCGACAAGGGCACAGGGCAACCAGCCCA
AGGGGGGGAGCTGTGCAAGTATTGCCGTGTCGCTAGCTGTCGTGACGATG
TTGACGGCAGTGGTTTCCGTCCTCTTCCTTGAAGGGGGAGTGTACTCGGT
GATGATGGAGGTGGAGGGCTGCGAGACCTCCATGGAGACCACGGACTTTG
GCGGCCGCATGGGGTGCTCCCGGGACTGCACGTGTATCGCCAACGACGGC
ACCACCTGGTGATGATGGAGGTGGAGGGCTGCGAGACCTCCATGGAGACC
ACGGACTTTGGCGGCCGCATGGGGTGCTCCCGGGACTGCACGTGTATCGC
CAACGACGGCACCACCTGGTGCGTGAGCTACGCCGGCGACTGCGAGGACA
TGACAGACACCGAGGACCTGCTCCTGACCTCCACCATCAGCCTGTCCGTC
GCTGCCGTGGTTGCCATGGCACTCACGTTCTCCGGCTGCAGCGCCGCCCT
CTGCAGCCAGCGCAAGTCATGAGTGCGTGAGCTACGCCGGCGACTGCGAG
GACATGACAGACACCGAGGACCTGCTCCTGACCTCCACCATCAGCCTGTC
CGTCGCTGCCGTGGTTGCCATGGCACTCACGTTCTCCGGCTGCAGCGCCG
CCCTCTGCAGCCAGCGCAAGTCATGA
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