mRNA_S-ischiensis_contig89.20361.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig89.20361.1
Unique NamemRNA_S-ischiensis_contig89.20361.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig89.20361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig89contigS-ischiensis_contig89:387210..387598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size390
Cds size375
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817360.1662798-UTR-S-ischiensis_contig89:387209..3872231622817360.1662798-UTR-S-ischiensis_contig89:387209..387223Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 387210..387223 +
1695741055.5249307-UTR-S-ischiensis_contig89:387209..3872231695741055.5249307-UTR-S-ischiensis_contig89:387209..387223Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 387210..387223 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817360.1790621-CDS-S-ischiensis_contig89:387223..3875981622817360.1790621-CDS-S-ischiensis_contig89:387223..387598Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 387224..387598 +
1695741055.537138-CDS-S-ischiensis_contig89:387223..3875981695741055.537138-CDS-S-ischiensis_contig89:387223..387598Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 387224..387598 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig89.20361.1prot_S-ischiensis_contig89.20361.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig89 387224..387598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig89.20361.1

>prot_S-ischiensis_contig89.20361.1 ID=prot_S-ischiensis_contig89.20361.1|Name=mRNA_S-ischiensis_contig89.20361.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=125bp
MRRLPPRIAKPRALPRYFLPRAAANAVEAFRAISQEAVAVNRCSFSVWPE
RGVWELPACGFHLLHRAAACPGGSCVLKGEGGSDVLGGRELWGETTNSDP
LIVELYSSSLSNHQLSTTYIIKSIH
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mRNA from alignment at S-ischiensis_contig89:387210..387598+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig89.20361.1 ID=mRNA_S-ischiensis_contig89.20361.1|Name=mRNA_S-ischiensis_contig89.20361.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=389bp|location=Sequence derived from alignment at S-ischiensis_contig89:387210..387598+ (Schizocladia ischiensis KU_0333)
GGCAACAGGCGGGGATGCGGCGGCTGCCGCCGCGGATTGCCAAACCAAGG
GCACTACCGCGGTACTTTTTGCCCCGAGCAGCCGCAAACGCGGTGGAGGC
GTTCAGGGCCATCTCACAGGAGGCTGTTGCGGTCAACAGATGTTCGTTTT
CCGTGTGGCCAGAGAGGGGAGTTTGGGAATTACCTGCGTGCGGATTTCAT
CTCCTGCACCGTGCAGCGGCGTGTCCTGGAGGGTCCTGCGTGCTCAAGGG
AGAGGGAGGTAGCGATGTACTGGGAGGACGAGAGTTGTGGGGGGAAACCA
CAAATTCGGATCCCCTCATTGTCGAATTGTACTCCAGTAGTTTGAGCAAC
CATCAACTATCAACCACCTATATAATCAAGTCGATCCAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig89:387210..387598+

>mRNA_S-ischiensis_contig89.20361.1 ID=mRNA_S-ischiensis_contig89.20361.1|Name=mRNA_S-ischiensis_contig89.20361.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=750bp|location=Sequence derived from alignment at S-ischiensis_contig89:387210..387598+ (Schizocladia ischiensis KU_0333)
ATGCGGCGGCTGCCGCCGCGGATTGCCAAACCAAGGGCACTACCGCGGTA
CTTTTTGCCCCGAGCAGCCGCAAACGCGGTGGAGGCGTTCAGGGCCATCT
CACAGGAGGCTGTTGCGGTCAACAGATGTTCGTTTTCCGTGTGGCCAGAG
AGGGGAGTTTGGGAATTACCTGCGTGCGGATTTCATCTCCTGCACCGTGC
AGCGGCGTGTCCTGGAGGGTCCTGCGTGCTCAAGGGAGAGGGAGGTAGCG
ATGTACTGGGAGGACGAGAGTTGTGGGGGGAAACCACAAATTCGGATCCC
CTCATTGTCGAATTGTACTCCAGTAGTTTGAGCAACCATCAACTATCAAC
CACCTATATAATCAAGTCGATCCACATGCGGCGGCTGCCGCCGCGGATTG
CCAAACCAAGGGCACTACCGCGGTACTTTTTGCCCCGAGCAGCCGCAAAC
GCGGTGGAGGCGTTCAGGGCCATCTCACAGGAGGCTGTTGCGGTCAACAG
ATGTTCGTTTTCCGTGTGGCCAGAGAGGGGAGTTTGGGAATTACCTGCGT
GCGGATTTCATCTCCTGCACCGTGCAGCGGCGTGTCCTGGAGGGTCCTGC
GTGCTCAAGGGAGAGGGAGGTAGCGATGTACTGGGAGGACGAGAGTTGTG
GGGGGAAACCACAAATTCGGATCCCCTCATTGTCGAATTGTACTCCAGTA
GTTTGAGCAACCATCAACTATCAACCACCTATATAATCAAGTCGATCCAC
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