mRNA_S-ischiensis_contig89.20360.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig89.20360.1
Unique NamemRNA_S-ischiensis_contig89.20360.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig89.20360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig89contigS-ischiensis_contig89:371945..372630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size686
Cds size552
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig89.20360.1prot_S-ischiensis_contig89.20360.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig89 372029..372580 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817360.1116846-UTR-S-ischiensis_contig89:371944..3720281622817360.1116846-UTR-S-ischiensis_contig89:371944..372028Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 371945..372028 +
1695741055.4902658-UTR-S-ischiensis_contig89:371944..3720281695741055.4902658-UTR-S-ischiensis_contig89:371944..372028Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 371945..372028 +
1622817360.1338685-UTR-S-ischiensis_contig89:372580..3726301622817360.1338685-UTR-S-ischiensis_contig89:372580..372630Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 372581..372630 +
1695741055.5128887-UTR-S-ischiensis_contig89:372580..3726301695741055.5128887-UTR-S-ischiensis_contig89:372580..372630Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 372581..372630 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817360.1221583-CDS-S-ischiensis_contig89:372028..3725801622817360.1221583-CDS-S-ischiensis_contig89:372028..372580Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 372029..372580 +
1695741055.5019872-CDS-S-ischiensis_contig89:372028..3725801695741055.5019872-CDS-S-ischiensis_contig89:372028..372580Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 372029..372580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig89.20360.1

>prot_S-ischiensis_contig89.20360.1 ID=prot_S-ischiensis_contig89.20360.1|Name=mRNA_S-ischiensis_contig89.20360.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=184bp
MWSTVLITSKRSRCSGVGFPPTPLSTSTRWQGTLQVTEAMASSCRSATST
PGTCSSVVARSASKCDASLRLHCCTVRTTLKHPNAYGSNQPIATAPPPYC
TALYCTVLRHVGRSNAQSRPLHQSITNHSIARHTVRHTVQRCCSPQSLTP
RLHQASLSTAVQHRGHSTTCRPYSVCVWGGRIH*
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mRNA from alignment at S-ischiensis_contig89:371945..372630+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig89.20360.1 ID=mRNA_S-ischiensis_contig89.20360.1|Name=mRNA_S-ischiensis_contig89.20360.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=686bp|location=Sequence derived from alignment at S-ischiensis_contig89:371945..372630+ (Schizocladia ischiensis KU_0333)
CGGGTCAGGCGCTCGGGACTCCGCTCCGCTCTCAAGTCCCAAGAGTTTGT
GTTACTGTACAGCACGCGACAGCAAGACACGGACATGTGGTCTACAGTAC
TCATCACATCCAAGCGCAGCCGTTGCTCTGGTGTGGGGTTTCCGCCCACC
CCTCTGAGCACTAGCACACGTTGGCAGGGCACACTGCAGGTGACCGAAGC
TATGGCAAGCTCGTGTCGATCCGCAACATCTACACCAGGCACTTGCAGTT
CCGTTGTCGCGAGGTCTGCATCGAAGTGTGATGCATCCTTGCGCTTGCAC
TGCTGCACGGTACGGACAACTTTGAAACACCCTAACGCGTACGGATCCAA
TCAACCCATCGCAACAGCACCGCCACCGTACTGCACTGCACTGTACTGTA
CAGTGCTACGGCATGTAGGGCGATCGAACGCCCAATCGCGTCCACTACAT
CAGTCCATCACCAACCACAGCATTGCTCGCCACACTGTGCGTCACACTGT
ACAGCGGTGCTGCAGTCCTCAGTCACTCACTCCACGGTTACACCAAGCAT
CCCTCTCCACAGCCGTACAACACAGAGGTCACTCAACAACATGTCGCCCC
TACAGTGTGTGTGTGTGGGGGGGCAGGATTCACTGAATCCCACCAACTGG
GGACACCGTTTGCCCAAAGCATCGGTACGACACATG
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Coding sequence (CDS) from alignment at S-ischiensis_contig89:371945..372630+

>mRNA_S-ischiensis_contig89.20360.1 ID=mRNA_S-ischiensis_contig89.20360.1|Name=mRNA_S-ischiensis_contig89.20360.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1104bp|location=Sequence derived from alignment at S-ischiensis_contig89:371945..372630+ (Schizocladia ischiensis KU_0333)
ATGTGGTCTACAGTACTCATCACATCCAAGCGCAGCCGTTGCTCTGGTGT
GGGGTTTCCGCCCACCCCTCTGAGCACTAGCACACGTTGGCAGGGCACAC
TGCAGGTGACCGAAGCTATGGCAAGCTCGTGTCGATCCGCAACATCTACA
CCAGGCACTTGCAGTTCCGTTGTCGCGAGGTCTGCATCGAAGTGTGATGC
ATCCTTGCGCTTGCACTGCTGCACGGTACGGACAACTTTGAAACACCCTA
ACGCGTACGGATCCAATCAACCCATCGCAACAGCACCGCCACCGTACTGC
ACTGCACTGTACTGTACAGTGCTACGGCATGTAGGGCGATCGAACGCCCA
ATCGCGTCCACTACATCAGTCCATCACCAACCACAGCATTGCTCGCCACA
CTGTGCGTCACACTGTACAGCGGTGCTGCAGTCCTCAGTCACTCACTCCA
CGGTTACACCAAGCATCCCTCTCCACAGCCGTACAACACAGAGGTCACTC
AACAACATGTCGCCCCTACAGTGTGTGTGTGTGGGGGGGCAGGATTCACT
GAATGTGGTCTACAGTACTCATCACATCCAAGCGCAGCCGTTGCTCTGGT
GTGGGGTTTCCGCCCACCCCTCTGAGCACTAGCACACGTTGGCAGGGCAC
ACTGCAGGTGACCGAAGCTATGGCAAGCTCGTGTCGATCCGCAACATCTA
CACCAGGCACTTGCAGTTCCGTTGTCGCGAGGTCTGCATCGAAGTGTGAT
GCATCCTTGCGCTTGCACTGCTGCACGGTACGGACAACTTTGAAACACCC
TAACGCGTACGGATCCAATCAACCCATCGCAACAGCACCGCCACCGTACT
GCACTGCACTGTACTGTACAGTGCTACGGCATGTAGGGCGATCGAACGCC
CAATCGCGTCCACTACATCAGTCCATCACCAACCACAGCATTGCTCGCCA
CACTGTGCGTCACACTGTACAGCGGTGCTGCAGTCCTCAGTCACTCACTC
CACGGTTACACCAAGCATCCCTCTCCACAGCCGTACAACACAGAGGTCAC
TCAACAACATGTCGCCCCTACAGTGTGTGTGTGTGGGGGGGCAGGATTCA
CTGA
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