mRNA_S-ischiensis_contig89.20357.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig89.20357.1
Unique NamemRNA_S-ischiensis_contig89.20357.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig89.20357.1 vs. uniprot
Match: D8LQ14_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ14_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 1.350e-49
Identity = 88/153 (57.52%), Postives = 113/153 (73.86%), Query Frame = 3 
Query:  579 RVLAVDIQPLFPADEYARRWHERAGGRLAAIRARYPALAQAFAKDYYRESPFFSDNVLYARWGAEEEACGFMDDVVGPAFREAIAAYVDLVHRDVVHAPGPP---ALLFRQREFDRYHAEREQAHPIIKANFGADWADAYVSRFLFP-GAGPR 1025
            RVLA+D+QPLFP ++YA ++ + A  +L AIR +YP L +   KDYY+ SPFFSD+++YARWG +EEA GFMD VV PAFRE + AYV++V++   HAPG P   A+L RQ EFDR+HAEREQ  PI+ + FGA +AD YVS FLF  G G R
Sbjct:  216 RVLALDLQPLFPGEDYAAKYAD-ANAKLKAIRNKYPQLGEELRKDYYKGSPFFSDSMMYARWGPKEEADGFMDKVVMPAFRECMQAYVEIVNQAPAHAPGSPTEQAVLERQAEFDRFHAEREQVRPILTSKFGASFADTYVSDFLFAYGGGQR 367
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BLAST of mRNA_S-ischiensis_contig89.20357.1 vs. uniprot
Match: A0A7S2RIT5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RIT5_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.330e-15
Identity = 53/152 (34.87%), Postives = 83/152 (54.61%), Query Frame = 3 
Query:  564 CPWETRVLAV-DIQPLFPADEYARRWHERAGGRLAAIRARYPALAQAFAKDYYRESPFFSDNVLYARWGAEEEACGFMDDVVGPAFREAIAAYVDLVHRDVVHAPGPPA---LLFRQREFDRYHAEREQAHPIIKANFGADWADAYVSRFLF 1007
            C  + ++LAV D QPL   D     +H         ++ ++P+L    +  +Y E+ FFSD +L+ R+   E+      +V+ PAF+E +  YVDLV +DV       A   +L +Q  +D+Y AER+ AH +  + FG +WAD Y+S FLF
Sbjct:  161 CFGKKKILAVIDCQPLV--DRENSEYHAEFSQPFLRVKEQFPSLCGKMSNRFYDENQFFSDGMLFGRF---EDTSPIASEVL-PAFQEYLQVYVDLV-KDVPRDTTDKATARVLAQQAAYDQYSAERDPAHALFVSYFGEEWADEYMSDFLF 305
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BLAST of mRNA_S-ischiensis_contig89.20357.1 vs. uniprot
Match: A0A6H5K0Q7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q7_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 4.830e-13
Identity = 66/198 (33.33%), Postives = 89/198 (44.95%), Query Frame = 2 
Query:    5 CPFAQLSPVLLLSLLLLIVNYGAALI-PKPLTSA--RGSRLKVPPRAATRTAENTGPTIHRKVSVRSPS---------------------REEGVFSPRPPSHVT---------DPLAGFPSFALEDGEDAHLHYAHLLRYQMAAMQEWLGLDRVACPEGLKGACNPKKGSRIMNLCYAGEWVRKLRASYLDTPGMQV 499
            CPFAQLSP+LLLS L+L   +GA+ + PKPL ++  RG       R+ T  +   G +   +                            R  GV     P  +          +PLA   S     G    L +A LLR Q + ++  L L R   P  +   CNP++ SR+ NL Y G+ VRK+R SYLDTP MQV
Sbjct:    3 CPFAQLSPLLLLSCLVLFFQFGASFLSPKPLLASLQRG-------RSLTDASAGVGSSSRSRAXXXXXXXXXXXXXXXXXXXXXXXXXGPRMLGVSDVLAPPELQLQSDEGFEGEPLAWTESL----GSGGPLFFADLLRTQASTLEVELALGRSPVPRCMDTVCNPERRSRVRNLIYTGDRVRKVRMSYLDTPDMQV 189
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig89.20357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LQ14_ECTSI1.350e-4957.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2RIT5_9STRA2.330e-1534.87Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6H5K0Q7_9PHAE4.830e-1333.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig89contigS-ischiensis_contig89:269521..273829 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1027
Cds size831
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig89.20357.1prot_S-ischiensis_contig89.20357.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig89 271092..273829 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817359.2277386-UTR-S-ischiensis_contig89:269520..2696501622817359.2277386-UTR-S-ischiensis_contig89:269520..269650Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 269521..269650 -
1695741054.9001656-UTR-S-ischiensis_contig89:269520..2696501695741054.9001656-UTR-S-ischiensis_contig89:269520..269650Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 269521..269650 -
1622817359.2499487-UTR-S-ischiensis_contig89:270375..2704221622817359.2499487-UTR-S-ischiensis_contig89:270375..270422Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 270376..270422 -
1695741054.9145045-UTR-S-ischiensis_contig89:270375..2704221695741054.9145045-UTR-S-ischiensis_contig89:270375..270422Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 270376..270422 -
1622817359.2696068-UTR-S-ischiensis_contig89:271074..2710911622817359.2696068-UTR-S-ischiensis_contig89:271074..271091Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 271075..271091 -
1695741054.9296107-UTR-S-ischiensis_contig89:271074..2710911695741054.9296107-UTR-S-ischiensis_contig89:271074..271091Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 271075..271091 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817359.2887638-CDS-S-ischiensis_contig89:271091..2712011622817359.2887638-CDS-S-ischiensis_contig89:271091..271201Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 271092..271201 -
1695741054.9414005-CDS-S-ischiensis_contig89:271091..2712011695741054.9414005-CDS-S-ischiensis_contig89:271091..271201Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 271092..271201 -
1622817359.3004882-CDS-S-ischiensis_contig89:271883..2721081622817359.3004882-CDS-S-ischiensis_contig89:271883..272108Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 271884..272108 -
1695741054.9544241-CDS-S-ischiensis_contig89:271883..2721081695741054.9544241-CDS-S-ischiensis_contig89:271883..272108Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 271884..272108 -
1622817359.3117929-CDS-S-ischiensis_contig89:273333..2738291622817359.3117929-CDS-S-ischiensis_contig89:273333..273829Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 273334..273829 -
1695741054.9651353-CDS-S-ischiensis_contig89:273333..2738291695741054.9651353-CDS-S-ischiensis_contig89:273333..273829Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 273334..273829 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig89.20357.1

>prot_S-ischiensis_contig89.20357.1 ID=prot_S-ischiensis_contig89.20357.1|Name=mRNA_S-ischiensis_contig89.20357.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=277bp
AVPVRPALARAPAQSSPLDRQLRGSFDTEAADFSAGIKAESPPARRDTHR
GKHGPHYPPEGVGALPVPGRRRFQPASPLSCDRPAGGLPVFRIGGWRRRP
PALRAPPAVPDGCDAGMVGAGPGCLPGRPEGGLQPEKGVADNEPLLRGRV
GAQAARELPRHTGHAGVHLCGLRARDMGGRPPAWGERHVHGRRVSWRWTS
SPCSQRMSTRGGGTSGRGGALPRSGRATPPLLRRLPRTTTGNPHSFPTTC
CTPAGGRRRRRVASWMTLWARPSVRR*
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mRNA from alignment at S-ischiensis_contig89:269521..273829-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig89.20357.1 ID=mRNA_S-ischiensis_contig89.20357.1|Name=mRNA_S-ischiensis_contig89.20357.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4309bp|location=Sequence derived from alignment at S-ischiensis_contig89:269521..273829- (Schizocladia ischiensis KU_0333)
GCCGTGCCCGTTCGCCCAGCTCTCGCCCGTGCTCCTGCTCAGTCTTCTCC
TCTTGATCGTCAACTACGGGGCAGCTTTGATACCGAAGCCGCTGACTTCA
GCGCGGGGATCAAGGCTGAAAGTCCCCCCGCGCGCCGCGACACGCACCGC
GGAAAACACGGGCCCCACTATCCACCGGAAGGTGTCGGTGCGCTCCCCGT
CCCGGGAAGAAGGCGTTTTCAGCCCGCGTCCCCCCTCTCATGTGACAGAC
CCGCTGGCGGGCTTCCCGTCTTTCGCATTGGAGGATGGCGAAGACGCCCA
CCTGCACTACGCGCACCTCCTGCGGTACCAGATGGCTGCGATGCAGGAAT
GGTTGGGGCTGGACCGGGTTGCCTGCCCGGAAGGCCTGAAGGGGGCCTGC
AACCCGAAAAAGGGGTCGCGGATAATGAACCTCTGCTACGCGGGAGAGTG
GGTGCGCAAGCTGCGCGCGAGCTACCTCGACACACCGGGCATGCAGGTGA
ACGGGCCGCAGAATGGGACCGGCTTCAGCACGCCAGTCAGTTACACAACA
TGTCCGTGTTGGAGAGAGTAGCCTGCGGCGACACGCAGGCTTGACCAGTT
CGTTTGTCCGGCCATCATCAGCACTGTACACGTGAACGATAAGCGAGGGC
TAGACGGAGGACTGCTTTGCATCCTCCCTGTCCACGTTTTCCCGCTCGAG
TCCAGCCAGTATTAGGTGACAAGGGCCCTCCCAAAAACTGGCCCGGGGGG
GGCAATATCTCTCCAATATGTAGTACTGCAGCAGTGCCAGTGCCAGTGCT
TCCAAGTAGGTTTTGCACCCGACCGTGTGTCGCTTCGCCGATGATGCCTA
CAGTTCAAACACGTGCCCATGCCCACGCCCACGCCCACGCACCTGCAGTG
AAAGGTGCAGTACTAAGTAGTGAAAACTAACAGCAAACGCAGATTGATAT
GTTATGCACTGTCAACTAGCACTGCTACGTGCTCGTACTCCAGAATAACA
AAAATGGACAATCTGTAGTGCATATCAATACATTGCATGGTTGGTACCGC
CTTGAAAGCCGAACGAGGCTACCATGGCGAACATTTGCTTAAAATGCAAA
GTTATTTAACTGCAGGTGATTGTTGAGGTACGAACGTTTGCACTTCGAAG
GAATTCACGCGCCTCCTCCCCACCCCCAGCCCAAACTCCTGGATCACCAA
CACAACATGCTTCGTGATATGATGTGGTGTGATGTCAAACTACTACAGTG
CTACTGTGGTATACAGCACAAGTACGCCACATCACATCACATCACAGAGA
CTACGGCTCGCACGCATGCACCCACCCACCCGCGTGCGTACACACTCACG
CACGTGCCCAGCACAGGCGTTGACAGCATCACATCCACTACATGCCAATG
TCTGTTTGGTCAATTGATTGCTCCTACTGCAAGTACCACAAATCACCAAG
TACTTGTAACTATGACACCGGTCTTCGAGGTACCGTAGATACATTAAACG
ATCCACACCGCCATATTGCTGTTTGTTTCATACGTGCAGCAGATTGCAGC
GATTCAATTAAATATAGATCTGTCAGGTGGTGCTACAATATCACCTGTGC
GAAATCAGGCGTGCTCACTGAGATTTCAGTGCTACTTACGGTAGGCTGCA
GCGCCCTCCCTGCCCCCTAAACGAATCCCTTGCACCAACACCCGCACGCG
CCCACGCACCCACGTCTGCAGGTGTTCACCTCTGTGGCCTACGGGCGCGA
GACATGGGGGGACGCCCCCCTGCTTGGGGTGAGCGCCATGTCCATGGGAG
ACGCGTGTCCTGGCGGTGGACATCCAGCCCCTGTTCCCAGCGGATGAGTA
CGCGCGGAGGTGGCACGAGCGGGCGGGGGGGCGCCTTGCCGCGATCCGGG
CGCGCTACCCCGCCCTTGCTCAGGCGTTTGCCAAGGACTACTACAGGTAC
GGATTTGCCCCGCCATCATGTGTGTATGAATGCTTGGATCTTCTCACATT
GTGGGTGCCCCCCAAGTGATTTGATATGTGCTTGATCGGGGACGGCATTG
TGTCGGGCAAGTTGAGTGTATACTCTATACGAGTATATATAGGTACGTTT
GAATGTGATGTGATGTGTGAAGCGCTGAAACTACTGGATTTTGAAGCGAC
TCACACATCAGATCCCATCACATCACGTCTCGTCACATCAATTTACTGGC
ACCAATGACCTCTGCGCCTCGCCTGATGTTTGTGATGTGATCTGATGTGG
TATATCGAGGTACTTGAAGTACGTGCTGTGCAGTAGATGTTTTCGATTGA
TATGTACTGTGCACATACACATGCCAACGCCCTACGCTCACTCACCCTCA
AATCCTCCACACGCGTGCGCGCTCACACGCCCACATGATCACGCTCACAC
ACACGCACCCCTCCACGACTTCAGCGCATTGACACAAACGCACACACGCT
CACACACTGTCACACCATCAGCACACATGCACGTCCTCACATGCACGAAC
GCACGTACGCATGCCCGCGCCCGCCCGCCCACCCGGGGTCGACAACATGT
GGCGTGATGTGGTGTGATGTGATGCGCTACTCTAAACACACCATGGTTTG
ACATCACATCGGATGCCCGCGGCCGCAGGGAATCCCCATTCTTTTCCGAC
AACGTGCTGTACGCCCGCTGGGGGGCGGAGGAGGAGGCGTGTGGCTTCAT
GGATGACGTTGTGGGCCCGGCCTTCCGTGAGGCGATAGCTGCCTATGTCG
ATCTGGTGGCATCGCTCCCGTGTGGGGAGGGCGGAGAAGCCCCCGAGGAT
CCCGGGGGGGCGGTCGCGGCTGCCGTGCGTGCCAGGTGACTTGAGCCTTG
TAGAGATAGACTGCGCCCCACCTCCTTTTTTGCGTCCCTAAGTTATGACT
TCGAGAGGCGCTATTTATCCTGCGCGAGTGGAGGAAGAGTATCTGTTGCG
GTTCCAGGTTTTGGGGCGGGCCCGGAACTCGCTCCGTAGTTGTTGGTTTA
GACACTGTCGGTAGGGGAGTGTACGAGCGGCTGTTGGATTGGACGTTGCC
GACCCAACAGGCAGGGGTGAGCCGCCAACCCGACAGCACATATACAGACT
CGAGCATTACTGTTCTCATACAGCATAATACTTTATGGTTCTTCGAGGAA
CTTCGGAAGTACAGCAGTACTCGAATTCCGAGTATACTCCCAAGAATACT
TTGCGCACCGCCACGTACTACTCGTACTGCTGGTGATATGTCACAGCCAC
ACAGCCACCCACCTGCCCACCCCCCTACCCCATAACCCCCCTGCTTCCCT
CCTCCTCCTCCTCCTCCTCCTCCCCACTCGCCTGTCTCCCCCCCCCGCCT
GCCTTCCTCTCCTCGTCTCCCCATGGCCTTGTGGGTACAGGAAGATCCGC
AGTTGAGGTCCATCGCGACGTGGTCCACGCCCCGGGCCCGCCTGCTCTTC
TTTTGTCATGCAAGCTGTACGCGCACTTCCTTTCAGTTCCGGTTATGTGC
TTTGGAGGGGCAATACCTGCGTATCTTCTCCGAGGTCCTGCTCTCGAGTA
CTGCGAACCATACTTGGAGGGTTCCTTCAGAGTACTGCACTGTGGTTCAG
CAGTGGCGCGTACAGAGACTTGTGGGCAGGACCGGACCTCAAATGACAAG
GGGGAAAACAACGCCATACTTCCAAGCACCTTGTAACCCTTGGAGGACAG
CGGTACACCAAATTACAGCATGTCAGTGTAGGCTCAGTGTAACGCTGTTG
CTCTACGGGCTATCCCTTGCGCGACGATGCTACAGCACACCGATATCGTG
CGAGCAAACGCGTCAAGTTAACAATGATCATGCCGCCGTTGTGACTCCCG
TAAAAGTTCAACCCTTGCTTGAGTGCATGTGCTGTACAGGAGCCAGATCG
ATGCGCTTGGTCGACGGTCTTGGGTCTACGGCAAGCACAGTACTACGAAG
TATGTAGAGTATATATGCTTCGAAATACTGTAGAATACACTACGCACATG
ACTACGGTACACTACCCTAAACTACAGGGGCACTCACGACAACACTAAGC
TCTTGGGGCTCAGTGTGGGATACTGTGCATGTACATCATCGTCCCTTACT
GCTCCTGTGGGGGCTAACGCCGCCAACCACAATGCCTGCCAACCCCAACC
CCCCAAAAACAAAAATACATCGTAAATAGCAGGCAGAGGGAGTTTGACCG
CTACCACGCGGAGCGCGAACAAGCCCACCCCATCATCAAGGCAAATTTCG
GTGCAGACTGGGCCGACGCTTACGTCTCCCGCTTCCTCTTCCCGGGCGCA
GGGCCCAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig89:269521..273829-

>mRNA_S-ischiensis_contig89.20357.1 ID=mRNA_S-ischiensis_contig89.20357.1|Name=mRNA_S-ischiensis_contig89.20357.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1662bp|location=Sequence derived from alignment at S-ischiensis_contig89:269521..273829- (Schizocladia ischiensis KU_0333)
GCCGTGCCCGTTCGCCCAGCTCTCGCCCGTGCTCCTGCTCAGTCTTCTCC
TCTTGATCGTCAACTACGGGGCAGCTTTGATACCGAAGCCGCTGACTTCA
GCGCGGGGATCAAGGCTGAAAGTCCCCCCGCGCGCCGCGACACGCACCGC
GGAAAACACGGGCCCCACTATCCACCGGAAGGTGTCGGTGCGCTCCCCGT
CCCGGGAAGAAGGCGTTTTCAGCCCGCGTCCCCCCTCTCATGTGACAGAC
CCGCTGGCGGGCTTCCCGTCTTTCGCATTGGAGGATGGCGAAGACGCCCA
CCTGCACTACGCGCACCTCCTGCGGTACCAGATGGCTGCGATGCAGGAAT
GGTTGGGGCTGGACCGGGTTGCCTGCCCGGAAGGCCTGAAGGGGGCCTGC
AACCCGAAAAAGGGGTCGCGGATAATGAACCTCTGCTACGCGGGAGAGTG
GGTGCGCAAGCTGCGCGCGAGCTACCTCGACACACCGGGCATGCAGGCCG
TGCCCGTTCGCCCAGCTCTCGCCCGTGCTCCTGCTCAGTCTTCTCCTCTT
GATCGTCAACTACGGGGCAGCTTTGATACCGAAGCCGCTGACTTCAGCGC
GGGGATCAAGGCTGAAAGTCCCCCCGCGCGCCGCGACACGCACCGCGGAA
AACACGGGCCCCACTATCCACCGGAAGGTGTCGGTGCGCTCCCCGTCCCG
GGAAGAAGGCGTTTTCAGCCCGCGTCCCCCCTCTCATGTGACAGACCCGC
TGGCGGGCTTCCCGTCTTTCGCATTGGAGGATGGCGAAGACGCCCACCTG
CACTACGCGCACCTCCTGCGGTACCAGATGGCTGCGATGCAGGAATGGTT
GGGGCTGGACCGGGTTGCCTGCCCGGAAGGCCTGAAGGGGGCCTGCAACC
CGAAAAAGGGGTCGCGGATAATGAACCTCTGCTACGCGGGAGAGTGGGTG
CGCAAGCTGCGCGCGAGCTACCTCGACACACCGGGCATGCAGGTGTTCAC
CTCTGTGGCCTACGGGCGCGAGACATGGGGGGACGCCCCCCTGCTTGGGG
TGAGCGCCATGTCCATGGGAGACGCGTGTCCTGGCGGTGGACATCCAGCC
CCTGTTCCCAGCGGATGAGTACGCGCGGAGGTGGCACGAGCGGGCGGGGG
GGCGCCTTGCCGCGATCCGGGCGCGCTACCCCGCCCTTGCTCAGGCGTTT
GCCAAGGACTACTACAGGTGTTCACCTCTGTGGCCTACGGGCGCGAGACA
TGGGGGGACGCCCCCCTGCTTGGGGTGAGCGCCATGTCCATGGGAGACGC
GTGTCCTGGCGGTGGACATCCAGCCCCTGTTCCCAGCGGATGAGTACGCG
CGGAGGTGGCACGAGCGGGCGGGGGGGCGCCTTGCCGCGATCCGGGCGCG
CTACCCCGCCCTTGCTCAGGCGTTTGCCAAGGACTACTACAGGGAATCCC
CATTCTTTTCCGACAACGTGCTGTACGCCCGCTGGGGGGCGGAGGAGGAG
GCGTGTGGCTTCATGGATGACGTTGTGGGCCCGGCCTTCCGTGAGGCGAT
AGGGAATCCCCATTCTTTTCCGACAACGTGCTGTACGCCCGCTGGGGGGC
GGAGGAGGAGGCGTGTGGCTTCATGGATGACGTTGTGGGCCCGGCCTTCC
GTGAGGCGATAG
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