mRNA_S-ischiensis_contig89.20352.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig89.20352.1
Unique NamemRNA_S-ischiensis_contig89.20352.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig89.20352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig89contigS-ischiensis_contig89:209358..209664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size309
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817360.0068924-CDS-S-ischiensis_contig89:209357..2096631622817360.0068924-CDS-S-ischiensis_contig89:209357..209663Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 209358..209663 +
1695741055.44048-CDS-S-ischiensis_contig89:209357..2096631695741055.44048-CDS-S-ischiensis_contig89:209357..209663Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 209358..209663 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig89.20352.1prot_S-ischiensis_contig89.20352.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig89 209358..209663 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig89.20352.1

>prot_S-ischiensis_contig89.20352.1 ID=prot_S-ischiensis_contig89.20352.1|Name=mRNA_S-ischiensis_contig89.20352.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=102bp
VGGGLTLLLLFSLSVVFVFAVLVAVVGFASGTPGRGVWGRPVLSGGQQSD
PQHQPMFTAVDFSRFRYVGIPWGTVRLQTGITVLDSTTCRLFHTRVCGTR
DP
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mRNA from alignment at S-ischiensis_contig89:209358..209664+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig89.20352.1 ID=mRNA_S-ischiensis_contig89.20352.1|Name=mRNA_S-ischiensis_contig89.20352.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=307bp|location=Sequence derived from alignment at S-ischiensis_contig89:209358..209664+ (Schizocladia ischiensis KU_0333)
GTTGGTGGCGGGCTTACATTGCTGCTGTTGTTCTCTTTATCTGTTGTTTT
TGTTTTCGCTGTTCTCGTTGCTGTTGTTGGTTTTGCGAGCGGGACACCAG
GGCGGGGGGTGTGGGGGCGGCCGGTGTTGAGCGGCGGCCAGCAAAGTGAC
CCACAACATCAGCCCATGTTCACTGCAGTCGATTTCAGCCGATTCAGGTA
TGTAGGCATTCCCTGGGGGACCGTACGCTTGCAAACAGGCATTACTGTAC
TAGACTCTACAACATGCCGTTTGTTCCACACACGAGTATGTGGCACGAGA
GACCCAA
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Coding sequence (CDS) from alignment at S-ischiensis_contig89:209358..209664+

>mRNA_S-ischiensis_contig89.20352.1 ID=mRNA_S-ischiensis_contig89.20352.1|Name=mRNA_S-ischiensis_contig89.20352.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=612bp|location=Sequence derived from alignment at S-ischiensis_contig89:209358..209664+ (Schizocladia ischiensis KU_0333)
GTTGGTGGCGGGCTTACATTGCTGCTGTTGTTCTCTTTATCTGTTGTTTT
TGTTTTCGCTGTTCTCGTTGCTGTTGTTGGTTTTGCGAGCGGGACACCAG
GGCGGGGGGTGTGGGGGCGGCCGGTGTTGAGCGGCGGCCAGCAAAGTGAC
CCACAACATCAGCCCATGTTCACTGCAGTCGATTTCAGCCGATTCAGGTA
TGTAGGCATTCCCTGGGGGACCGTACGCTTGCAAACAGGCATTACTGTAC
TAGACTCTACAACATGCCGTTTGTTCCACACACGAGTATGTGGCACGAGA
GACCCAGTTGGTGGCGGGCTTACATTGCTGCTGTTGTTCTCTTTATCTGT
TGTTTTTGTTTTCGCTGTTCTCGTTGCTGTTGTTGGTTTTGCGAGCGGGA
CACCAGGGCGGGGGGTGTGGGGGCGGCCGGTGTTGAGCGGCGGCCAGCAA
AGTGACCCACAACATCAGCCCATGTTCACTGCAGTCGATTTCAGCCGATT
CAGGTATGTAGGCATTCCCTGGGGGACCGTACGCTTGCAAACAGGCATTA
CTGTACTAGACTCTACAACATGCCGTTTGTTCCACACACGAGTATGTGGC
ACGAGAGACCCA
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