mRNA_S-ischiensis_contig89.20349.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig89.20349.1
Unique NamemRNA_S-ischiensis_contig89.20349.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig89.20349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig89contigS-ischiensis_contig89:135941..136423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size483
Cds size360
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817359.9518244-UTR-S-ischiensis_contig89:135940..1360631622817359.9518244-UTR-S-ischiensis_contig89:135940..136063Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 135941..136063 +
1695741055.4125319-UTR-S-ischiensis_contig89:135940..1360631695741055.4125319-UTR-S-ischiensis_contig89:135940..136063Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 135941..136063 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817359.9664543-CDS-S-ischiensis_contig89:136063..1364231622817359.9664543-CDS-S-ischiensis_contig89:136063..136423Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 136064..136423 +
1695741055.4227064-CDS-S-ischiensis_contig89:136063..1364231695741055.4227064-CDS-S-ischiensis_contig89:136063..136423Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 136064..136423 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig89.20349.1prot_S-ischiensis_contig89.20349.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig89 136064..136423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig89.20349.1

>prot_S-ischiensis_contig89.20349.1 ID=prot_S-ischiensis_contig89.20349.1|Name=mRNA_S-ischiensis_contig89.20349.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=120bp
MSNAVAVAAPVPLPCVRIAPFWGAGAGAAHHLRQTLAKLCRRLLDMCDQH
ARLGLSLRNSTLATYRRGEEDEERKHCVVVAVLQCVMRLPRQPGRGGRPG
RGRGGTKKVDGSNGPSPQP*
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mRNA from alignment at S-ischiensis_contig89:135941..136423+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig89.20349.1 ID=mRNA_S-ischiensis_contig89.20349.1|Name=mRNA_S-ischiensis_contig89.20349.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=483bp|location=Sequence derived from alignment at S-ischiensis_contig89:135941..136423+ (Schizocladia ischiensis KU_0333)
TTAGGAGAAGCGGAGGAGGAGGACTCAAGAGAACACCCCCACCACCCCCC
CCCCGTGGGGATGTGGAATCAGAGATGGGCGAGACCTGCCACGGGCGTCT
GGCCACGCCGCAGCGGATGATAAATGTCCAACGCGGTGGCGGTGGCGGCG
CCTGTGCCCCTGCCTTGTGTGCGCATTGCACCCTTCTGGGGGGCAGGGGC
GGGGGCAGCGCATCACTTACGTCAGACACTTGCCAAGCTGTGCCGCCGCC
TGCTTGACATGTGCGACCAGCATGCTCGGCTTGGTTTGTCCTTGCGCAAC
TCCACGCTTGCAACTTACAGGAGGGGGGAGGAGGACGAGGAACGGAAGCA
TTGTGTCGTTGTCGCTGTTTTACAATGTGTAATGAGGCTGCCTCGACAAC
CAGGGCGGGGCGGGCGACCCGGGCGGGGGCGGGGGGGGACAAAAAAAGTC
GACGGATCGAACGGGCCCAGCCCGCAGCCATAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig89:135941..136423+

>mRNA_S-ischiensis_contig89.20349.1 ID=mRNA_S-ischiensis_contig89.20349.1|Name=mRNA_S-ischiensis_contig89.20349.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=720bp|location=Sequence derived from alignment at S-ischiensis_contig89:135941..136423+ (Schizocladia ischiensis KU_0333)
ATGTCCAACGCGGTGGCGGTGGCGGCGCCTGTGCCCCTGCCTTGTGTGCG
CATTGCACCCTTCTGGGGGGCAGGGGCGGGGGCAGCGCATCACTTACGTC
AGACACTTGCCAAGCTGTGCCGCCGCCTGCTTGACATGTGCGACCAGCAT
GCTCGGCTTGGTTTGTCCTTGCGCAACTCCACGCTTGCAACTTACAGGAG
GGGGGAGGAGGACGAGGAACGGAAGCATTGTGTCGTTGTCGCTGTTTTAC
AATGTGTAATGAGGCTGCCTCGACAACCAGGGCGGGGCGGGCGACCCGGG
CGGGGGCGGGGGGGGACAAAAAAAGTCGACGGATCGAACGGGCCCAGCCC
GCAGCCATAGATGTCCAACGCGGTGGCGGTGGCGGCGCCTGTGCCCCTGC
CTTGTGTGCGCATTGCACCCTTCTGGGGGGCAGGGGCGGGGGCAGCGCAT
CACTTACGTCAGACACTTGCCAAGCTGTGCCGCCGCCTGCTTGACATGTG
CGACCAGCATGCTCGGCTTGGTTTGTCCTTGCGCAACTCCACGCTTGCAA
CTTACAGGAGGGGGGAGGAGGACGAGGAACGGAAGCATTGTGTCGTTGTC
GCTGTTTTACAATGTGTAATGAGGCTGCCTCGACAACCAGGGCGGGGCGG
GCGACCCGGGCGGGGGCGGGGGGGGACAAAAAAAGTCGACGGATCGAACG
GGCCCAGCCCGCAGCCATAG
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