mRNA_S-ischiensis_contig89.20344.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig89.20344.1
Unique NamemRNA_S-ischiensis_contig89.20344.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig89.20344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig89contigS-ischiensis_contig89:76073..76838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size768
Cds size513
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817359.8341541-CDS-S-ischiensis_contig89:76072..765851622817359.8341541-CDS-S-ischiensis_contig89:76072..76585Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 76073..76585 +
1695741055.361171-CDS-S-ischiensis_contig89:76072..765851695741055.361171-CDS-S-ischiensis_contig89:76072..76585Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 76073..76585 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817359.84551-UTR-S-ischiensis_contig89:76585..768381622817359.84551-UTR-S-ischiensis_contig89:76585..76838Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 76586..76838 +
1695741055.3714707-UTR-S-ischiensis_contig89:76585..768381695741055.3714707-UTR-S-ischiensis_contig89:76585..76838Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 76586..76838 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig89.20344.1prot_S-ischiensis_contig89.20344.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig89 76073..76585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig89.20344.1

>prot_S-ischiensis_contig89.20344.1 ID=prot_S-ischiensis_contig89.20344.1|Name=mRNA_S-ischiensis_contig89.20344.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=171bp
NKYGGWRNLKVGPTPHARTACGGLLWVVCVCLSLQRRAQSRWGRRPGRMP
PGRTQPGMASRLRLHRTHPDDATLRDTRRRPASRRVPDNLVFDPRPTTAP
GAGETTPVSSARQARGCQCARAHEGAPPVPGRHPANASLGDDTQAAAYDR
CVQAFVESDCPRLSHNAPCQ*
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mRNA from alignment at S-ischiensis_contig89:76073..76838+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig89.20344.1 ID=mRNA_S-ischiensis_contig89.20344.1|Name=mRNA_S-ischiensis_contig89.20344.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=766bp|location=Sequence derived from alignment at S-ischiensis_contig89:76073..76838+ (Schizocladia ischiensis KU_0333)
AATAAATACGGGGGGTGGCGGAATTTGAAAGTAGGTCCAACACCGCACGC
CCGGACCGCCTGCGGTGGCCTTTTGTGGGTCGTGTGTGTCTGTTTGTCCT
TGCAGCGACGCGCTCAATCCAGGTGGGGGCGCCGCCCGGGACGGATGCCG
CCCGGACGGACGCAGCCCGGCATGGCCTCACGCCTGCGACTGCATCGTAC
CCATCCCGACGACGCGACCTTGAGGGATACGCGTAGGCGCCCCGCGTCAC
GGCGTGTCCCTGACAACCTGGTCTTCGACCCGCGGCCCACCACGGCCCCC
GGCGCGGGTGAAACCACTCCCGTGAGCTCTGCACGGCAGGCACGGGGCTG
CCAGTGCGCCCGCGCGCATGAGGGCGCTCCGCCGGTGCCGGGTAGGCACC
CCGCCAACGCCTCATTGGGTGATGATACCCAAGCTGCTGCATACGATAGG
TGCGTGCAGGCATTTGTGGAATCGGATTGTCCGAGGTTGTCGCACAATGC
GCCATGCCAATGACTGTGAAGTTTGTACGAAGCACCTACAAAGAATAGAC
CGGGAAACAGCTTGCCGTGGGCCCGCTGAGCAGCGTGCCAAATGGGGAGA
GGTGAAGTTGAACGGCTACAAACTTGCCAATGGGCCTACCACTGTTACCA
CTGTGGCGGCGGTGGTCATTGAAAACGTGACGGATGAATGGGGGCCCCGT
TTCTTCCTGTGGGTCACGCTTGGGAAGCGTGATGTACGAGTACAAGTGCG
GCATGTTCCAGTGGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig89:76073..76838+

>mRNA_S-ischiensis_contig89.20344.1 ID=mRNA_S-ischiensis_contig89.20344.1|Name=mRNA_S-ischiensis_contig89.20344.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1026bp|location=Sequence derived from alignment at S-ischiensis_contig89:76073..76838+ (Schizocladia ischiensis KU_0333)
AATAAATACGGGGGGTGGCGGAATTTGAAAGTAGGTCCAACACCGCACGC
CCGGACCGCCTGCGGTGGCCTTTTGTGGGTCGTGTGTGTCTGTTTGTCCT
TGCAGCGACGCGCTCAATCCAGGTGGGGGCGCCGCCCGGGACGGATGCCG
CCCGGACGGACGCAGCCCGGCATGGCCTCACGCCTGCGACTGCATCGTAC
CCATCCCGACGACGCGACCTTGAGGGATACGCGTAGGCGCCCCGCGTCAC
GGCGTGTCCCTGACAACCTGGTCTTCGACCCGCGGCCCACCACGGCCCCC
GGCGCGGGTGAAACCACTCCCGTGAGCTCTGCACGGCAGGCACGGGGCTG
CCAGTGCGCCCGCGCGCATGAGGGCGCTCCGCCGGTGCCGGGTAGGCACC
CCGCCAACGCCTCATTGGGTGATGATACCCAAGCTGCTGCATACGATAGG
TGCGTGCAGGCATTTGTGGAATCGGATTGTCCGAGGTTGTCGCACAATGC
GCCATGCCAATGAAATAAATACGGGGGGTGGCGGAATTTGAAAGTAGGTC
CAACACCGCACGCCCGGACCGCCTGCGGTGGCCTTTTGTGGGTCGTGTGT
GTCTGTTTGTCCTTGCAGCGACGCGCTCAATCCAGGTGGGGGCGCCGCCC
GGGACGGATGCCGCCCGGACGGACGCAGCCCGGCATGGCCTCACGCCTGC
GACTGCATCGTACCCATCCCGACGACGCGACCTTGAGGGATACGCGTAGG
CGCCCCGCGTCACGGCGTGTCCCTGACAACCTGGTCTTCGACCCGCGGCC
CACCACGGCCCCCGGCGCGGGTGAAACCACTCCCGTGAGCTCTGCACGGC
AGGCACGGGGCTGCCAGTGCGCCCGCGCGCATGAGGGCGCTCCGCCGGTG
CCGGGTAGGCACCCCGCCAACGCCTCATTGGGTGATGATACCCAAGCTGC
TGCATACGATAGGTGCGTGCAGGCATTTGTGGAATCGGATTGTCCGAGGT
TGTCGCACAATGCGCCATGCCAATGA
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