mRNA_S-ischiensis_contig89.20343.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig89.20343.1
Unique NamemRNA_S-ischiensis_contig89.20343.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig89.20343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig89contigS-ischiensis_contig89:66582..67310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size662
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig89.20343.1prot_S-ischiensis_contig89.20343.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig89 66673..67005 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817359.76416-UTR-S-ischiensis_contig89:66581..666721622817359.76416-UTR-S-ischiensis_contig89:66581..66672Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 66582..66672 +
1695741055.3128352-UTR-S-ischiensis_contig89:66581..666721695741055.3128352-UTR-S-ischiensis_contig89:66581..66672Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 66582..66672 +
1622817359.7852488-UTR-S-ischiensis_contig89:67005..670541622817359.7852488-UTR-S-ischiensis_contig89:67005..67054Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 67006..67054 +
1695741055.334249-UTR-S-ischiensis_contig89:67005..670541695741055.334249-UTR-S-ischiensis_contig89:67005..67054Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 67006..67054 +
1622817359.7967694-UTR-S-ischiensis_contig89:67121..673101622817359.7967694-UTR-S-ischiensis_contig89:67121..67310Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 67122..67310 +
1695741055.3446746-UTR-S-ischiensis_contig89:67121..673101695741055.3446746-UTR-S-ischiensis_contig89:67121..67310Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 67122..67310 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817359.775053-CDS-S-ischiensis_contig89:66672..670051622817359.775053-CDS-S-ischiensis_contig89:66672..67005Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 66673..67005 +
1695741055.3237236-CDS-S-ischiensis_contig89:66672..670051695741055.3237236-CDS-S-ischiensis_contig89:66672..67005Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 66673..67005 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig89.20343.1

>prot_S-ischiensis_contig89.20343.1 ID=prot_S-ischiensis_contig89.20343.1|Name=mRNA_S-ischiensis_contig89.20343.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=111bp
MTICFGTTANTRTGLVSTVDLEYPSTASRFLCITWPIMRNVHPPFTDVTC
LVTQRFCGRVCCYTCKVHRPTWQYQELLVPCTCYCTARRALWASIGDRIA
AFRVHCAHQA*
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mRNA from alignment at S-ischiensis_contig89:66582..67310+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig89.20343.1 ID=mRNA_S-ischiensis_contig89.20343.1|Name=mRNA_S-ischiensis_contig89.20343.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=729bp|location=Sequence derived from alignment at S-ischiensis_contig89:66582..67310+ (Schizocladia ischiensis KU_0333)
GTCGTCGAGTTACGGCCCGACTGGCTAGTGTCCGGAACCCGGCTCGGCCC
GAGCCATTCTTGCGGCGAGCCTGGGCGTCGTCTAGTCCCTAATGACCATT
TGCTTTGGTACTACTGCAAATACACGAACCGGACTCGTAAGTACAGTAGA
CCTCGAGTACCCGTCCACTGCAAGTAGGTTTTTGTGCATCACTTGGCCAA
TCATGCGCAATGTCCATCCACCCTTCACTGATGTTACTTGCCTGGTGACA
CAGCGATTTTGTGGAAGAGTTTGCTGCTACACATGCAAAGTTCACCGACC
AACGTGGCAATATCAAGAGCTACTCGTACCATGTACTTGCTACTGCACAG
CTAGACGTGCTCTATGGGCGAGCATTGGAGATAGGATTGCCGCGTTTCGC
GTGCACTGTGCGCATCAGGCTTGATCACTATTGTTGTTGAAGGTCCTCAC
CTACAGTGCAACTGAACAAGCACATGACCAAACAGAGGGTGTTCCTTACT
CCAGAGCTCACGTACTCTACCCAACCGTCGGCAACATTTTACATCATCCG
AGCCTCTGGTAGTCTCGACTTCCACCCAGGAGCTTGCCATAGGGCGTTTG
GTGCACGTCGCGAGACGCGTCGCCACAGGGCACCGCCGTCCCCAACCACC
ACGACCCCATAACTTCGTCAGATTGCGGAGCAGGTGTCCACAAGTCGGCA
AAGAGACCAGGGCGATTCCGAGAAAGTGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig89:66582..67310+

>mRNA_S-ischiensis_contig89.20343.1 ID=mRNA_S-ischiensis_contig89.20343.1|Name=mRNA_S-ischiensis_contig89.20343.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=666bp|location=Sequence derived from alignment at S-ischiensis_contig89:66582..67310+ (Schizocladia ischiensis KU_0333)
ATGACCATTTGCTTTGGTACTACTGCAAATACACGAACCGGACTCGTAAG
TACAGTAGACCTCGAGTACCCGTCCACTGCAAGTAGGTTTTTGTGCATCA
CTTGGCCAATCATGCGCAATGTCCATCCACCCTTCACTGATGTTACTTGC
CTGGTGACACAGCGATTTTGTGGAAGAGTTTGCTGCTACACATGCAAAGT
TCACCGACCAACGTGGCAATATCAAGAGCTACTCGTACCATGTACTTGCT
ACTGCACAGCTAGACGTGCTCTATGGGCGAGCATTGGAGATAGGATTGCC
GCGTTTCGCGTGCACTGTGCGCATCAGGCTTGAATGACCATTTGCTTTGG
TACTACTGCAAATACACGAACCGGACTCGTAAGTACAGTAGACCTCGAGT
ACCCGTCCACTGCAAGTAGGTTTTTGTGCATCACTTGGCCAATCATGCGC
AATGTCCATCCACCCTTCACTGATGTTACTTGCCTGGTGACACAGCGATT
TTGTGGAAGAGTTTGCTGCTACACATGCAAAGTTCACCGACCAACGTGGC
AATATCAAGAGCTACTCGTACCATGTACTTGCTACTGCACAGCTAGACGT
GCTCTATGGGCGAGCATTGGAGATAGGATTGCCGCGTTTCGCGTGCACTG
TGCGCATCAGGCTTGA
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