mRNA_S-ischiensis_contig89.20341.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig89.20341.1 vs. uniprot
Match: A0A7S1C5V0_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5V0_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 5.360e-13 Identity = 56/133 (42.11%), Postives = 72/133 (54.14%), Query Frame = 1
Query: 949 LSNRVLAVDDDPLVNLVIRAMLTGEGFEVTTLEDGDQIAVHLSALQPGGDGGTPLPLAAAYDCVVLDIIMARTNGVDIARDLRRGGHR-GPLVAATASASPEETELYRRAGFDAVLAKPFSAEELGRCLRGLT 1344
L+ L DD+ + V+ L G VT LEDGD++ SAL+ G A A D ++LDIIM RTNG + R LR GG P+VA T +A E+ YR AGF+ VL KPFS E+L L +T
Sbjct: 209 LNLHCLCADDERVNRRVLERHLEALGCGVTMLEDGDEVE---SALRGVG--------AQAVDVILLDIIMQRTNGEAVCRKLRAGGGELPPMVAVTGNAMEEDVLRYRAAGFNEVLRKPFSREQLRETLIRVT 330
BLAST of mRNA_S-ischiensis_contig89.20341.1 vs. uniprot
Match: A0A843SZ80_9BACT (Response regulator n=1 Tax=Gemmatimonas sp. TaxID=1962908 RepID=A0A843SZ80_9BACT) HSP 1 Score: 72.4 bits (176), Expect = 1.130e-11 Identity = 49/130 (37.69%), Postives = 65/130 (50.00%), Query Frame = 1
Query: 937 GVKTLSNRVLAVDDDPLVNLVIRAMLTGEGFEVTTLEDGDQIAVHLSALQPGGDGGTPLPLAAAYDCVVLDIIMARTNGVDIARDLRRGGH--RGPLVAATASASPEETELYRRAGFDAVLAKPFSAEEL 1320
G +TL+ R+L V+DD V ++ +L EGFEV +G + G L + D +V+D+++ NG D A LR G R PLVA TAS E E + GFD L KPFS EEL
Sbjct: 12 GQRTLTGRILLVEDDDEVRAALQFLLRCEGFEVEVAANGRE--------------GIQLARSLLPDVIVMDLVLPEMNGFDAAAVLRSGVETSRIPLVAVTASWLGSELERLQGIGFDGALRKPFSNEEL 127
BLAST of mRNA_S-ischiensis_contig89.20341.1 vs. uniprot
Match: A0A7V2HH77_9BACT (Response regulator n=1 Tax=Bryobacteraceae bacterium TaxID=2212468 RepID=A0A7V2HH77_9BACT) HSP 1 Score: 71.6 bits (174), Expect = 1.410e-11 Identity = 42/124 (33.87%), Postives = 68/124 (54.84%), Query Frame = 1
Query: 949 LSNRVLAVDDDPLVNLVIRAMLTGEGFEVTTLEDGDQIAVHLSALQPGGDGGTPLPLAAAYDCVVLDIIMARTNGVDIARDLRRGGHRGPLVAATASASPEETELYRRAGFDAVLAKPFSAEEL 1320
+S R+L DDD + L+ R +L +G+ V T G + ++AL+ A +D V+LD+ M NG+ AR +R PL+A T + +P + EL+R+AG D +LAKP++ + L
Sbjct: 1 MSGRILVADDDAVCRLMARRILEKQGYLVETASTGLEA---IAALRQ-----------ARFDVVLLDVQMPGMNGLTAARQIRAMLVPSPLIAVTGAVTPADQELFRQAGIDDILAKPYAVDTL 110
BLAST of mRNA_S-ischiensis_contig89.20341.1 vs. uniprot
Match: A0A7S1G741_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G741_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 2.270e-11 Identity = 41/124 (33.06%), Postives = 68/124 (54.84%), Query Frame = 1
Query: 961 VLAVDDDPLVNLVIRAMLTGEGFEVTTLEDGDQIAVHLSALQPGGDGGTPLPLAAAYDCVVLDIIMARTNGVDIARDLRRGGHRGPLVAATASASPEETELYRRAGFDAVLAKPFSAEELGRCL 1332
V+A+DD+ ++ +++ L E LEDG +A L + +G P C+++DI+M R++GV + R +R G P+ A T + T+ YR AGFD +LAKPF+++ + CL
Sbjct: 866 VIAIDDERVLRKLLKRYLKALAVEFVVLEDGCDLAPELERCRK--EGIEPA-------CILMDIVMLRSDGVSVCRKMRASGVNTPIYAMTGNVDRSHTDTYRSAGFDGLLAKPFTSDGILNCL 980
BLAST of mRNA_S-ischiensis_contig89.20341.1 vs. uniprot
Match: A0A1D7QS39_9BACI (Response regulator receiver protein n=1 Tax=Salisediminibacterium beveridgei TaxID=632773 RepID=A0A1D7QS39_9BACI) HSP 1 Score: 70.9 bits (172), Expect = 3.300e-11 Identity = 45/138 (32.61%), Postives = 72/138 (52.17%), Query Frame = 1
Query: 937 GVKTLSNRVLAVDDDPLVNLVIRAMLTGEGFEVTTLEDGDQIAVHLSALQPGGDGGTPLPLAAAYDCVVLDIIMARTNGVDIARDLRRGGHRGPLVAATASASPEETELYRR---AGFDAVLAKPFSAEELGRCLRGL 1341
G + L++R+L VDD+ ++ ++I L EG+ V T EDG Q L+ G D A D V++D +M G+++ ++++ + PL +A P+E E +R G DA +AKPF EL LRG+
Sbjct: 5 GEEKLTSRILVVDDEAVLRMLIEDTLESEGYLVETAEDGQQAMERLT----GHD--------ALVDLVIIDYMMPEMTGIEVVKEIKEQQEKPPLFLLL-TAKPDEEEAGKRYSDLGVDAFMAKPFKPSELVERLRGM 129
BLAST of mRNA_S-ischiensis_contig89.20341.1 vs. uniprot
Match: UPI001A320EAB (Response regulator transcription factor n=1 Tax=Candidatus Dormibacteraeota bacterium TaxID=2052315 RepID=UPI001A320EAB) HSP 1 Score: 73.6 bits (179), Expect = 3.320e-11 Identity = 42/121 (34.71%), Postives = 61/121 (50.41%), Query Frame = 1
Query: 958 RVLAVDDDPLVNLVIRAMLTGEGFEVTTLEDGDQIAVHLSALQPGGDGGTPLPLAAAYDCVVLDIIMARTNGVDIARDLRRGGHRGPLVAATASASPEETELYRRAGFDAVLAKPFSAEEL 1320
RVL VDDD ++ +R EG+EVT +E G + A++P D V+LD++M +G DI R++RR GHR P+V +A + + L G D + KPF EL
Sbjct: 2 RVLVVDDDAMIRKAVRLTCESEGYEVTEVERGADALAAVEAMRP--------------DMVLLDLMMPDMSGFDICREIRRAGHRVPVVILSAKSDEIDVVLGFEIGADDYIQKPFRPREL 108
BLAST of mRNA_S-ischiensis_contig89.20341.1 vs. uniprot
Match: A0A7S1CBE9_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBE9_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 3.640e-11 Identity = 42/121 (34.71%), Postives = 67/121 (55.37%), Query Frame = 1
Query: 958 RVLAVDDDPLVNLVIRAMLTGEGFEVTTLEDGDQIAVHLSALQPGGDGGTPLPLAAAYDCVVLDIIMARTNGVDIARDLRRGGHRGPLVAATASASPEETELYRRAGFDAVLAKPFSAEEL 1320
V+AVDD+ ++ +++ L+ G T L DG ++ + GD A CV+LD++M R++G D+ R LRR G + P+ A T +A YR+ GF+ VLAKPF+ E++
Sbjct: 366 HVIAVDDEAVLRRLMQRFLSKVGVRATLLSDGLELEAAIDDASKAGD---------APVCVLLDVVMLRSDGADVCRALRRQGVQVPIYAMTGNADNASVFKYRQWGFNGVLAKPFTDEDV 477
BLAST of mRNA_S-ischiensis_contig89.20341.1 vs. uniprot
Match: A0A7Y7E9V3_STRMO (Response regulator transcription factor n=2 Tax=Streptomyces TaxID=1883 RepID=A0A7Y7E9V3_STRMO) HSP 1 Score: 71.2 bits (173), Expect = 2.600e-10 Identity = 46/128 (35.94%), Postives = 66/128 (51.56%), Query Frame = 1
Query: 958 RVLAVDDDPLVNLVIRAMLTGEGFEVTTLEDGDQIAVHLSALQPGGDGGTPLPLAAAYDCVVLDIIMARTNGVDIARDLRRGGHRGPLVAATASASPEETELYRRAGFDAVLAKPFSAEELGRCLRGL 1341
R+L V+D+P + ++R LT EG+ V T +DG Q LS Q AA+D +VLDI++ +G ++ LRR G R P++ TA + + G D L KPFS +EL LR L
Sbjct: 19 RILVVEDEPKMRTLLRRALTEEGYAVDTADDGPQA---LSIAQ-----------VAAFDAIVLDIMLPGLDGFEVCAQLRRHGQRVPVLMLTARDAVADRVAGLDGGADDYLTKPFSLDELLARLRAL 132
BLAST of mRNA_S-ischiensis_contig89.20341.1 vs. uniprot
Match: UPI0019A272E9 (Response regulator n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=UPI0019A272E9) HSP 1 Score: 68.2 bits (165), Expect = 3.970e-10 Identity = 43/121 (35.54%), Postives = 65/121 (53.72%), Query Frame = 1
Query: 958 RVLAVDDDPLVNLVIRAMLTGEGFEVTTLEDGDQIAVHLSALQPGGDGGTPLPLAAAYDCVVLDIIMARTNGVDIARDLRRGGHRGPLVAATASASPEETELYRRAGFDAVLAKPFSAEEL 1320
R+LAVDDDP V ++IR L G+E++T Q A+ ++A +P +D V+ DI M + +G+++ R +R+GG+RG V T R G++AVL KPF EL
Sbjct: 25 RILAVDDDPDVVIIIRTYLEPLGYEISTATHAAQ-ALEVAAAEP-------------FDLVLCDIGMPKHSGIEVCRLMRQGGYRGKFVLMTGWDRKSFNVEDRSDGWEAVLKKPFVGAEL 131
BLAST of mRNA_S-ischiensis_contig89.20341.1 vs. uniprot
Match: A0A3D0NRV1_9FIRM (Stage 0 sporulation protein A homolog n=1 Tax=Oscillospiraceae bacterium TaxID=2485925 RepID=A0A3D0NRV1_9FIRM) HSP 1 Score: 70.1 bits (170), Expect = 3.990e-10 Identity = 43/129 (33.33%), Postives = 64/129 (49.61%), Query Frame = 1
Query: 958 RVLAVDDDPLVNLVIRAMLTGEGFEVTTLEDGDQIAVHLSALQPGGDGGTPLPLAAAYDCVVLDIIMARTNGVDIARDLRRGGHRGPLVAATASASPEETELYRRAGFDAVLAKPFSAEELGRCLRGLT 1344
+VL +D P +N V+ +L EG+ V + DG + HL AYDC+VLDI+M + +G+ + +LR P++ TA A E+ AG D L KPF+ +EL +R LT
Sbjct: 2 KVLLAEDTPDLNKVLATVLAHEGYAVDAVFDGQAASEHLET--------------DAYDCIVLDIMMPKKDGIQVLTELRAKNMITPVLMLTAKAEVEDRVTGLDAGADDYLTKPFAIKELLARVRALT 116 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig89.20341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig89.20341.1 >prot_S-ischiensis_contig89.20341.1 ID=prot_S-ischiensis_contig89.20341.1|Name=mRNA_S-ischiensis_contig89.20341.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=448bp RAGVEGVATAVGKMYSNLDVISQASSLLCAAASHQSDAATVAAAAATTPAback to top mRNA from alignment at S-ischiensis_contig89:58876..61461- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig89.20341.1 ID=mRNA_S-ischiensis_contig89.20341.1|Name=mRNA_S-ischiensis_contig89.20341.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2586bp|location=Sequence derived from alignment at S-ischiensis_contig89:58876..61461- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig89:58876..61461- >mRNA_S-ischiensis_contig89.20341.1 ID=mRNA_S-ischiensis_contig89.20341.1|Name=mRNA_S-ischiensis_contig89.20341.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2688bp|location=Sequence derived from alignment at S-ischiensis_contig89:58876..61461- (Schizocladia ischiensis KU_0333)back to top |