mRNA_S-ischiensis_contig89.20340.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig89.20340.1 vs. uniprot
Match: A0A2K3MQM8_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MQM8_TRIPR) HSP 1 Score: 276 bits (706), Expect = 1.190e-79 Identity = 159/452 (35.18%), Postives = 258/452 (57.08%), Query Frame = 1
Query: 4 WQKAMDKELQGLWNKGAFSDEPAPPDRKPVKTRYVYKIKHKADGSVERYKA*LVVRGFTQQQGADFFQTFSPVFGLDVMRSVLAAAACHGWAIHSLDFTQAYLNASLQEDIWLELLDG-------NIVKVNKALYGLKQSALKWYKEPRSTILGEGWSSSAKDECLYYRRSEDRRVAVLLTYVDDTAFTGDYGEEIKRMRDTLLSTYEG*DLGVPDQLLGVRIATDETGIILDQQLYTKSIVTKGMGSLDLRITTSPLDPGMDLSA*RDDEEELDCKLYPYANILGKLMFLVGMTRPDLASSVRELGHRAASPCMRHWRGLQHVLQYLAGTLHVCIHYAANMDSNDEQVFIGYSDSDWGNDIETRRSVTGYILLYDGLPIAWRSKQQGAVTLSSAEAEWTAMAQGMRHCIFLHNILGEIDMPQQATP-WFGDNRGALQAVTTTGFSGHTKHV 1335
W +AM EL+ L G + PP+ KP+ +++VYKIKHK+DG++ERYKA LV +G+ Q +G DFF TFSPV L +R +LA A+ GW +H LD A+L+ LQE++++ + DG + K+ K+LYGLKQ++ KWY++ S ++ EG++ S+ D L+ +D A+L+ YVDD G +EI R+++ L + ++ DLGV LG+ +A + GI + Q+ Y ++ G L + ++PLDP + L DD + + + Y ++GKL++L TRPD+A + ++L P M H++ V++YL + + + N D IGYSD+DW ++TRRS TGY I+W++K+Q ++ SS+EAE+ A++ ++L +L ++ + P F DN+ AL + F TKH+
Sbjct: 463 WIQAMTSELEALARTGTWKIVDLPPNVKPIGSKWVYKIKHKSDGTIERYKARLVAKGYNQVEGLDFFDTFSPVAKLTTVRMLLAIASIKGWFLHQLDVNNAFLHGDLQENVYMSIPDGVQCSKPNQVCKLLKSLYGLKQASRKWYEKLTSLLVKEGYTQSSSDHSLFTISQQDNFTALLI-YVDDIILAGTSLQEINRIKNILDTHFKIKDLGVVKYFLGLEVAHSKEGISISQRKYCLDLLHDS-GLLGSKPASTPLDPSVKLH--HDDGKPFE-DISMYRRLVGKLLYLTN-TRPDIAFATQQLSQFLHKPTMTHYKAACRVIRYLKHNPGMGLIFKRNADIQ----LIGYSDADWAGCLDTRRSTTGYCFFVGSSLISWKAKKQTTISKSSSEAEYRALSSATCELVWLLYLLKDLHIECSKQPVLFCDNQSALHIASNPVFHERTKHI 904
BLAST of mRNA_S-ischiensis_contig89.20340.1 vs. uniprot
Match: A0A392MAV7_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Trifolium medium TaxID=97028 RepID=A0A392MAV7_9FABA) HSP 1 Score: 265 bits (676), Expect = 7.260e-79 Identity = 157/452 (34.73%), Postives = 252/452 (55.75%), Query Frame = 1
Query: 4 WQKAMDKELQGLWNKGAFSDEPAPPDRKPVKTRYVYKIKHKADGSVERYKA*LVVRGFTQQQGADFFQTFSPVFGLDVMRSVLAAAACHGWAIHSLDFTQAYLNASLQEDIWLELLDG-------NIVKVNKALYGLKQSALKWYKEPRSTILGEGWSSSAKDECLYYRRSEDRRVAVLLTYVDDTAFTGDYGEEIKRMRDTLLSTYEG*DLGVPDQLLGVRIATDETGIILDQQLYTKSIVTKGMGSLDLRITTSPLDPGMDLSA*RDDEEELDCKLYPYANILGKLMFLVGMTRPDLASSVRELGHRAASPCMRHWRGLQHVLQYLAGTLHVCIHYAANMDSNDEQVFIGYSDSDWGNDIETRRSVTGYILLYDGLPIAWRSKQQGAVTLSSAEAEWTAMAQGMRHCIFLHNILGEIDMPQQATPW-FGDNRGALQAVTTTGFSGHTKHV 1335
WQKAM+ EL L G + PP KP+ +++VYKIK+KADG++ERYKA LV +G+ Q +G DFF TFSPV L +R +LA AA W +H LD A+L+ LQED+++ + +G + K+ K+LYGLKQ++ KWY++ S ++ EG+ S D L+ S D LL YVDD G E +R++ L + ++ DLGV LG+ +A GI + Q+ Y ++ K G L + T+PLDP + L +D+ +L + Y ++G+L++L TRPD++ ++++L P M H+ V++YL + ++ + D +G+SD+DW I+TRRS TGY ++W++K+Q V+ SS+EAE+ A++ I+L ++ +++M P + D++ A+ F TKH+
Sbjct: 43 WQKAMNDELDALAKTGTWKIVDLPPLTKPIGSKWVYKIKYKADGTIERYKARLVAKGYNQVEGLDFFDTFSPVAKLTTVRLLLAIAAIKNWNLHQLDVNNAFLHGDLQEDVYMTIPEGVTSPKPNQVCKLLKSLYGLKQASRKWYEKLTSLLIQEGYKQSTADYSLFTLHS-DTNFTALLVYVDDIILAGTSLLEFERIKGILDAHFKIKDLGVLKYFLGLEVAQSREGITVSQRKYCLDLL-KDSGLLASKPATTPLDPAVKL---HNDDGKLYEDISAYRRLIGRLLYLTN-TRPDISFAIQQLSQFLHKPTMVHYNAACRVVRYLKHNPGRGLLFSRHSDLQ----LLGFSDADWAGCIDTRRSTTGYCFFLGSSLVSWKAKKQLTVSRSSSEAEYRALSTATCELIWLLFLMKDLNMHCSKPPVIYCDSQSAMHIAQNPVFHERTKHL 484
BLAST of mRNA_S-ischiensis_contig89.20340.1 vs. uniprot
Match: A0A5N6LRR2_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LRR2_9ASTR) HSP 1 Score: 269 bits (688), Expect = 3.680e-78 Identity = 163/454 (35.90%), Postives = 252/454 (55.51%), Query Frame = 1
Query: 1 KWQKAMDKELQGLWNKGAFSDEPAPPDRKPVKTRYVYKIKHKADGSVERYKA*LVVRGFTQQQGADFFQTFSPVFGLDVMRSVLAAAACHGWAIHSLDFTQAYLNASLQEDIWLELLDG--------NIVKVNKALYGLKQSALKWYKEPRSTILGEGWSSSAKDECLYYRRSEDRRVAVLLTYVDDTAFTGDYGEEIKRMRDTLLSTYEG*DLGVPDQLLGVRIATDETGIILDQQLYTKSIVTKGMGSLDLRITTSPLDPGMDLSA*RDDEEELDCKLYPYANILGKLMFLVGMTRPDLASSVRELGHRAASPCMRHWRGLQHVLQYLAGTLHVCIHYAANMDSNDEQVFIGYSDSDWGNDIETRRSVTGYILLYDGLPIAWRSKQQGAVTLSSAEAEWTAMAQGMRHCIFLHNILGEIDMPQQA-TPWFGDNRGALQAVTTTGFSGHTKHV 1335
KW++AM++E++ L +S + P +KP+ +++VYKIK+K G VERYKA LV +G+TQ +G D+ TF+PV L +R++LA A W IH LD A+L+ L+E++++++ G + ++ K+LYGLKQ++ WY++ +T+ G+ S D L+ R++ AV+L YVDD GD +IK + L + DLG LG+ +A + GI+L Q+ YT I+ + MG R + P++ G+ L +D++ +D Y ++G+L++L TRPD+ SV L A P H+ V++YL TL I + + YSDSDW TRRS TGY+LL G P++W+SK+Q V+ SSAEAE+ AMA + ++ +L E+D PQ++ T F DN A F TKHV
Sbjct: 315 KWREAMEREIRALEQNDTWSLQELPFGKKPIDSKWVYKIKYKPSGEVERYKARLVAKGYTQMEGVDYHDTFAPVAKLVTVRALLALAVKRNWHIHQLDVNNAFLHGDLEEEVYMKIPPGFSSGEKETRVCRLQKSLYGLKQASRNWYQKFTTTLCDMGYKQSVADPSLFIYRTDGVH-AVVLIYVDDVIIVGDDMHKIKETKAELNHRFTIKDLGNLKYFLGIEVARTKDGIVLSQRKYTLDIL-RDMGLEGCRPSAFPMEQGLKLDK-SEDDDRVDAGQY--RRLVGRLLYLQA-TRPDIVYSVNLLSQFVADPRQPHFDAALRVVRYLKTTLGQGI----LLPKEGGLKLVAYSDSDWMGCPFTRRSRTGYLLLLGGAPVSWKSKKQSVVSRSSAEAEYRAMAATVSEILWFRWLLTELDTPQESPTTLFCDNEAARHIANNPVFHERTKHV 758
BLAST of mRNA_S-ischiensis_contig89.20340.1 vs. uniprot
Match: A0A392M7X1_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392M7X1_9FABA) HSP 1 Score: 265 bits (676), Expect = 1.450e-77 Identity = 157/452 (34.73%), Postives = 252/452 (55.75%), Query Frame = 1
Query: 4 WQKAMDKELQGLWNKGAFSDEPAPPDRKPVKTRYVYKIKHKADGSVERYKA*LVVRGFTQQQGADFFQTFSPVFGLDVMRSVLAAAACHGWAIHSLDFTQAYLNASLQEDIWLELLDG-------NIVKVNKALYGLKQSALKWYKEPRSTILGEGWSSSAKDECLYYRRSEDRRVAVLLTYVDDTAFTGDYGEEIKRMRDTLLSTYEG*DLGVPDQLLGVRIATDETGIILDQQLYTKSIVTKGMGSLDLRITTSPLDPGMDLSA*RDDEEELDCKLYPYANILGKLMFLVGMTRPDLASSVRELGHRAASPCMRHWRGLQHVLQYLAGTLHVCIHYAANMDSNDEQVFIGYSDSDWGNDIETRRSVTGYILLYDGLPIAWRSKQQGAVTLSSAEAEWTAMAQGMRHCIFLHNILGEIDMPQQATPW-FGDNRGALQAVTTTGFSGHTKHV 1335
WQKAM+ EL L G + PP KP+ +++VYKIK+KADG++ERYKA LV +G+ Q +G DFF TFSPV L +R +LA AA W +H LD A+L+ LQED+++ + +G + K+ K+LYGLKQ++ KWY++ S ++ EG+ S D L+ S D LL YVDD G E +R++ L + ++ DLGV LG+ +A GI + Q+ Y ++ K G L + T+PLDP + L +D+ +L + Y ++G+L++L TRPD++ ++++L P M H+ V++YL + ++ + D +G+SD+DW I+TRRS TGY ++W++K+Q V+ SS+EAE+ A++ I+L ++ +++M P + D++ A+ F TKH+
Sbjct: 232 WQKAMNDELDALAKTGTWKIVDLPPLTKPIGSKWVYKIKYKADGTIERYKARLVAKGYNQVEGLDFFDTFSPVAKLTTVRLLLAIAAIKNWNLHQLDVNNAFLHGDLQEDVYMTIPEGVTSPKPNQVCKLLKSLYGLKQASRKWYEKLTSLLIQEGYKQSTADYSLFTLHS-DTNFTALLVYVDDIILAGTSLLEFERIKGILDAHFKIKDLGVLKYFLGLEVAQSREGITVSQRKYCLDLL-KDSGLLASKPATTPLDPAVKL---HNDDGKLYEDISAYRRLIGRLLYLTN-TRPDISFAIQQLSQFLHKPTMVHYNAACRVVRYLKHNPGRGLLFSRHSDLQ----LLGFSDADWAGCIDTRRSTTGYCFFLGSSLVSWKAKKQLTVSRSSSEAEYRALSTATCELIWLLFLMKDLNMHCSKPPVIYCDSQSAMHIAQNPVFHERTKHL 673
BLAST of mRNA_S-ischiensis_contig89.20340.1 vs. uniprot
Match: A0A2N9I371_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9I371_FAGSY) HSP 1 Score: 261 bits (668), Expect = 6.630e-77 Identity = 162/458 (35.37%), Postives = 252/458 (55.02%), Query Frame = 1
Query: 4 WQKAMDKELQGLWNKGAFSDEPAPPDRKPVKTRYVYKIKHKADGSVERYKA*LVVRGFTQQQGADFFQTFSPVFGLDVMRSVLAAAACHGWAIHSLDFTQAYLNASLQEDIWLELLDG--------NIV-KVNKALYGLKQSALKWYKEPRSTILGEGWSSSAKDECLYYRRSEDRRVAVLLTYVDDTAFTGDYGEEIKRMRDTLLSTYEG*DLGVPDQLLGVRIATDETGIILDQQLYTKSIVTKGMGSLDLRITTSPLDPGMDLSA*RDDEEELDCKLYP----YANILGKLMFLVGMTRPDLASSVRELGHRAASPCMRHWRGLQHVLQYLAGTLHVCIHYAANMDSNDEQVFIGYSDSDWGNDIETRRSVTGYILLYDGLPIAWRSKQQGAVTLSSAEAEWTAMAQGMRHCIFLHNILGEIDMPQ-QATPWFGDNRGALQAVTTTGFSGHTKHV 1335
W +AM EL L +S +P PP + P+ +++V+K+K ++DGS+ERYKA LV +G+ QQ+G D+F+TFSPV +RS+LA AA GWA++ LD A+L+ L E++++ L G NIV K+ K+LYGLKQ++ +W+ + +T+L G+ S D L+ R+ +A LL YVDD ++R++ L + ++ DLG LG+ IA GI + Q+ Y I+ + G L + P+D + LS +L+ L P Y ++G+LM+L +TRPD+ +V +L P H++ QH+LQY+ G + Y SN E +SDSDW +TRRS TGY + ++WRSK+Q V+ SSAEAE+ AMA + I+L ++L ++ + A F D++ A+ F TKH+
Sbjct: 122 WCQAMQTELAALEANHTWSLQPLPPGKVPIGSKWVFKVKLRSDGSLERYKARLVAKGYNQQEGFDYFETFSPVAKFVTVRSLLAIAAVKGWALYQLDVNNAFLHGELDEEVYMTLPQGLHSKGEPSNIVCKLTKSLYGLKQASRQWFSKFSATLLNHGFIQSKADYSLFTRQDGSSFIA-LLVYVDDILIASSDAVAVQRLKLFLDAQFKLKDLGPVRYFLGLEIARSSQGISVSQRKYALEIL-EDAGLLGCKPVKCPMDQNLKLS-------KLEGPLLPDPTVYRRLIGRLMYLT-LTRPDIVFAVHKLSQFMEHPREPHYKAAQHILQYIKGAPSQGMFYP----SNSELHIKAFSDSDWAGCPDTRRSTTGYCIFLGHSLVSWRSKKQNIVSRSSAEAEYRAMASAVCEVIWLRSLLHDLQISHPNAALLFSDSQAAIHIAANPVFHERTKHI 565
BLAST of mRNA_S-ischiensis_contig89.20340.1 vs. uniprot
Match: A0A5N6PRR0_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PRR0_9ASTR) HSP 1 Score: 263 bits (673), Expect = 5.250e-76 Identity = 160/453 (35.32%), Postives = 250/453 (55.19%), Query Frame = 1
Query: 1 KWQKAMDKELQGLWNKGAFSDEPAPPDRKPVKTRYVYKIKHKADGSVERYKA*LVVRGFTQQQGADFFQTFSPVFGLDVMRSVLAAAACHGWAIHSLDFTQAYLNASLQEDIWLELL-------DGNIVKVNKALYGLKQSALKWYKEPRSTILGEGWSSSAKDECLYYRRSEDRRVAVLLTYVDDTAFTGDYGEEIKRMRDTLLSTYEG*DLGVPDQLLGVRIATDETGIILDQQLYTKSIVTKGMGSLDLRITTSPLDPGMDLSA*RDDEEELDCKLYPYANILGKLMFLVGMTRPDLASSVRELGHRAASPCMRHWRGLQHVLQYLAGTLHVCIHYAANMDSNDEQVFIGYSDSDWGNDIETRRSVTGYILLYDGLPIAWRSKQQGAVTLSSAEAEWTAMAQGMRHCIFLHNILGEIDMPQQA-TPWFGDNRGALQAVTTTGFSGHTKHV 1335
KW +AM +E+Q L ++ E P ++ + +++VYKIK+K +G VERYKA LV RGFTQ +G DF TF+PV L +R++LA A W IH LD A+L+ L E++++++ D + ++ K+LYGLKQ++ WY++ + +LG +++S D L+ R +D +AVL+ YVDD G+ +++ ++D L + DLG LG+ +A G++L Q+ YT I+ + G R ++ P++ + L +E++ Y ++G+L++L TRPD+A SV L P H + VL+YL + I + N + YSDSDW TRRS TGY+ L G PI+W++K+Q V+ SSAEAE+ AMA + I+L +L E+ +PQ + T F DN+ A F TKHV
Sbjct: 315 KWVEAMKQEIQALEKNNTWTIETLPEGKRAIDSKWVYKIKYKPNGDVERYKARLVARGFTQIEGEDFHDTFAPVAKLVTVRTLLAVATKRNWFIHQLDVNNAFLHGDLDEEVYMKIPHGFLKENDNRVCRLRKSLYGLKQASHNWYQKFTNALLGLSFTTSKADHSLFLYRHKDVFIAVLI-YVDDVIMAGNNLNKMQEVKDRLRDQFSIKDLGPLKYFLGIEVARTSRGLVLSQRKYTLDIL-EDSGMEGCRPSSFPIEQNLKLGI---EEQDPPVDAGRYRRLIGRLLYLQA-TRPDIAYSVNTLSQFVFDPRQSHMEAVTRVLRYLKSSPGQGILLSKEEGEN----LVVYSDSDWLGCPLTRRSRTGYLALLGGAPISWKTKKQSVVSRSSAEAEYRAMATSVSEIIWLRWLLHELGVPQTSPTTLFCDNQAARNIANNPVFHERTKHV 757
BLAST of mRNA_S-ischiensis_contig89.20340.1 vs. uniprot
Match: A0A2K3LMF0_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LMF0_TRIPR) HSP 1 Score: 258 bits (659), Expect = 8.230e-76 Identity = 154/452 (34.07%), Postives = 246/452 (54.42%), Query Frame = 1
Query: 4 WQKAMDKELQGLWNKGAFSDEPAPPDRKPVKTRYVYKIKHKADGSVERYKA*LVVRGFTQQQGADFFQTFSPVFGLDVMRSVLAAAACHGWAIHSLDFTQAYLNASLQEDIWLELLDG-------NIVKVNKALYGLKQSALKWYKEPRSTILGEGWSSSAKDECLYYRRSEDRRVAVLLTYVDDTAFTGDYGEEIKRMRDTLLSTYEG*DLGVPDQLLGVRIATDETGIILDQQLYTKSIVTKGMGSLDLRITTSPLDPGMDLSA*RDDEEELDCKLYPYANILGKLMFLVGMTRPDLASSVRELGHRAASPCMRHWRGLQHVLQYLAGTLHVCIHYAANMDSNDEQVFIGYSDSDWGNDIETRRSVTGYILLYDGLPIAWRSKQQGAVTLSSAEAEWTAMAQGMRHCIFLHNILGEIDMP-QQATPWFGDNRGALQAVTTTGFSGHTKHV 1335
W +AM+ EL L + P KP+ ++VYKIK KADGS++RYKA LV +G+ Q +G DFFQTFSPV + +R+VLA A+ W IH LD A+L+ L+ED++++ G + K+ K+LYGL+Q++ KWY++ ++ G++ D L+ +S +VLL YVDD TG+ +EI + L + DLG+ LG+ +A + GI L Q+ Y ++T+ G+L + ++ P+DP L D+ E + Y ++GKL++L TRPD+A V++L +P H++ VL+YL G + + N +G+SD+DWG I++RRS+TGY I W+SK+Q V+ SS+EAE+ A+A +L +L ++ + + + D++ AL + F TKH+
Sbjct: 97 WIQAMNNELTALAKNNTWIIVDLPDGAKPIGRKWVYKIKRKADGSIDRYKARLVAKGYNQIEGVDFFQTFSPVAKMSTIRTVLAVASIKNWHIHQLDVDNAFLHGDLEEDVYMKAPQGLTGVSANQVCKLKKSLYGLRQASRKWYEKLSQFLITIGYAQMTSDPTLF-TKSTSSDFSVLLVYVDDIVLTGNCMDEIDATKSQLHKAFRIKDLGILKFFLGLEVAHSQQGITLCQRKYCLELLTE-TGTLGCKPSSIPMDPSNRL---HHDDSEPHHDITKYRALVGKLLYLTS-TRPDIAFPVQQLSQFLDAPTSTHFKAAHKVLRYLKGNPGTGLFFPRNSSIQ----LLGFSDADWGGCIDSRRSITGYCFFLGQSLICWKSKKQLTVSKSSSEAEYRALASATCELQWLSYLLRDLQVTTDKLHALYCDSQSALHIASNPVFHERTKHL 538
BLAST of mRNA_S-ischiensis_contig89.20340.1 vs. uniprot
Match: A0A6G0HFF8_LARCR (Copia protein Gag-int-pol protein Copia VLP protein Copia protease n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0HFF8_LARCR) HSP 1 Score: 254 bits (650), Expect = 2.020e-75 Identity = 146/454 (32.16%), Postives = 242/454 (53.30%), Query Frame = 1
Query: 4 WQKAMDKELQGLWNKGAFSDEPAPPDRKPVKTRYVYKIKHKADGSVERYKA*LVVRGFTQQQGADFFQTFSPVFGLDVMRSVLAAAACHGWAIHSLDFTQAYLNASLQEDIWLELLDGNI--------VKVNKALYGLKQSALKWYKEPRSTILGEGWSSSAKDECLYYRRSEDRRVAVLLTYVDDTAFTGDYGEEIKRMRDTLLSTYEG*DLGVPDQLLGVRIATDETG--IILDQQLYTKSIVTKGMGSLDLRITTSPLDPGMDLSA*RDDEEELDCKLYPYANILGKLMFLVGMTRPDLASSVRELGHRAASPCMRHWRGLQHVLQYLAGTLHVCIHYAANMDSNDEQVFIGYSDSDWGNDIETRRSVTGYILLYDGLPIAWRSKQQGAVTLSSAEAEWTAMAQGMRHCIFLHNILGEIDMPQQATPWFGDNRGALQAVTTTGFSGHTKHV 1335
W++A D E + L + P DRKP+ +R+V+K+KH +DG VERYK LV +G++Q G D+ +TFSPV +R++L+ A + +H +D A+LN L+E+I++E DG I K+ K++YGLKQS W K ++ G++ S D C++ R ++ + +L YVDD + E + ++ L Y+ D+G +LG+ + D+T + L Q+ Y ++++ K G T+P D + L +DD Y +I+G L++ TRPD+A +V + A P H ++ +L+YL GT+++ + Y ++ + +G+SD+DW D + RRS TG I L G ++W SK+Q V LS+AEAE+ A++Q + C +L +L ++ M T DN+GA+ TKH+
Sbjct: 13 WKEAADLEYESLLENETWDLVELPKDRKPIGSRWVFKVKHHSDGEVERYKCRLVAKGYSQNYGVDYDETFSPVVRFSSIRTLLSFAVQNNLHVHQMDVVTAFLNGHLEEEIYMEQPDGYIKPGQEHLVCKLKKSIYGLKQSPRCWSKTFTESMKDIGFNQSTSDPCVFVRARQE--LEILAVYVDDLILITESLESMTELKVALKKKYKMKDMGELSYILGISVIQDKTNNSVYLHQKHYIEAVLQK-YGMDKANPVTTPADANVKLQ--KDDGVSNPVNPGTYQSIVGSLLYAAMATRPDIAQAVSAVSKFNAKPNTAHMTAVKRILRYLKGTINLALKY----QRSESETLLGFSDADWAGDQDDRRSTTGNIFLLGGGAVSWLSKKQNTVALSTAEAEYVALSQAAQECTWLTRLLSDLGMDATPTVILEDNQGAIAIAKNPVDHSRTKHI 457
BLAST of mRNA_S-ischiensis_contig89.20340.1 vs. uniprot
Match: A0A453I3S2_AEGTS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453I3S2_AEGTS) HSP 1 Score: 258 bits (659), Expect = 2.190e-75 Identity = 150/455 (32.97%), Postives = 251/455 (55.16%), Query Frame = 1
Query: 1 KWQKAMDKELQGLWNKGAFSDEPAPPDRKPVKTRYVYKIKHKADGSVERYKA*LVVRGFTQQQGADFFQTFSPVFGLDVMRSVLAAAACHGWAIHSLDFTQAYLNASLQEDIWLEL--------LDGNIVKVNKALYGLKQSALKWYKEPRSTILGEGWSSSAKDECLYYRRSEDRRVAVLLTYVDDTAFTGDYGEEIKRMRDTLLSTYEG*DLGVPDQLLGVRIATDETGIILDQQLYTKSIVTKGMGSLDLRITTSPLDPGMDLSA*RDDEEELDCKLYPYANILGKLMFLVGMTRPDLASSVRELGHRAASPCMRHWRGLQHVLQYLAGTLHVCIHYAANMDSNDEQVFIGYSDSDWGNDIETRRSVTGYILLYDGLPIAWRSKQQGAVTLSSAEAEWTAMAQGMRHCIFLHNILGEIDMPQQA--TPWFGDNRGALQAVTTTGFSGHTKHV 1335
+W AM +EL+ L + + P +K V ++VY +K +G +ERYKA LV RG++Q G D+ +TF+PV ++ +R +++ AA GW +H LD A+L+ L+E++++E+ +G + ++ K+LYGLKQS W+ R + G+ KD ++YR ++R++ +L YVDD TGD G EI R+++ L +E DLG LG+ IA GI L Q+ +T +++ MG L+ R T+P+D ++A D + + Y ++G+L++L TRPD+A +V + P H +L+YL GT + + + N V GYSD++W + ++ RRS +GY + G ++WRSK+Q V+ S+AEAE+ AM+QG+ +++ N+L E+ + ++ W DNR A+ TKH+
Sbjct: 144 RWCAAMREELEALRKQRTWELAELPAGKKTVGCKWVYSVKQNPEGKIERYKARLVARGYSQTYGIDYDETFAPVAKMNTVRILVSCAANFGWPLHQLDVKNAFLHGELKEEVYMEVPPGLDSSKTEGKVCRLKKSLYGLKQSPRAWFDRFRRAMCEMGYKQCNKDHTVFYRH-QNRKIVILAVYVDDIIITGDDGTEIARLKECLGKAFEVKDLGQMKYFLGIEIARSAKGIALSQRKHTLDLLSD-MGMLECRAATTPIDQNHKVTAQSGDLVDKE----KYQRLVGRLLYLCH-TRPDIAYAVSIVSRYMHEPRSGHVEAAHRILKYLKGTPGRGLWF----EGNGHLVVDGYSDANWASCLDDRRSTSGYCVFVGGNLVSWRSKKQPVVSKSTAEAEYRAMSQGLSEMLWVRNLLSELKLLREGPLNVWC-DNRSAICIANNPVQHDRTKHI 586
BLAST of mRNA_S-ischiensis_contig89.20340.1 vs. uniprot
Match: A0A2N9HMY8_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HMY8_FAGSY) HSP 1 Score: 257 bits (657), Expect = 3.530e-75 Identity = 157/451 (34.81%), Postives = 240/451 (53.22%), Query Frame = 1
Query: 4 WQKAMDKELQGLWNKGAFSDEPAPPDRKPVKTRYVYKIKHKADGSVERYKA*LVVRGFTQQQGADFFQTFSPVFGLDVMRSVLAAAACHGWAIHSLDFTQAYLNASLQEDIWLELLDG------NIVKVNKALYGLKQSALKWYKEPRSTILGEGWSSSAKDECLYYRRSEDRRVAVLLTYVDDTAFTGDYGEEIKRMRDTLLSTYEG*DLGVPDQLLGVRIATDETGIILDQQLYTKSIVTKGMGSLDLRITTSPLDPGMDLSA*RDDEEELDCKLYPYANILGKLMFLVGMTRPDLASSVRELGHRAASPCMRHWRGLQHVLQYLAGTLHVCIHYAANMDSNDEQVFIGYSDSDWGNDIETRRSVTGYILLYDGLPIAWRSKQQGAVTLSSAEAEWTAMAQGMRHCIFLHNILGEIDMPQQ-ATPWFGDNRGALQAVTTTGFSGHTKHV 1335
WQ+AM EL L + PP + V ++VYKIK +ADGSVERYKA LV RGFTQ+ G D+ +TF+PV L +RS+LA AA W + +D A+LN L E+++++ G + ++ +ALYGLKQ+ W+ + S + +G++ S+ D L+ R + + ++L YVDD TGD I ++ L +E DLG LG+ + + G L Q Y +++K G D + ++PL+ + L+ D E D LY ++G L++L +TRPDLA +V + ++P H+ + +L+Y+ GTL +H++A Y+D+DW D RRS TGY L I+WRSK+Q V SS EAE+ A+A ++L +L ++ PQ +TP DNR A+ F TKH+
Sbjct: 144 WQQAMADELDALHKTHTWDMTTLPPGKSAVGCKWVYKIKTRADGSVERYKARLVARGFTQEYGIDYEETFAPVARLTSVRSLLAVAAVRHWPLFQMDVKNAFLNGDLLEEVYMQPPPGYPDSQNQVCRLRRALYGLKQAPRAWFAKFSSVVAQQGFTPSSYDSALFIRHTSTG-ITLILLYVDDMIITGDDTAGICDLQKFLSQQFEMKDLGTLSYFLGLEVTSSSDGYYLSQAKYASDLLSKA-GLTDSKTVSTPLELNVKLNT-TDGEPLSDATLY--RQLVGSLIYLT-VTRPDLAYAVHLVSQFMSAPRSTHYAAVLRILRYIKGTLFHGLHFSAQSSLE----LRAYADADWAGDPTDRRSTTGYCFLLGSSLISWRSKKQSVVARSSTEAEYRALADATSELLWLRWLLADMGAPQTTSTPIHCDNRSAIHIAHNDVFHERTKHI 584 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig89.20340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig89.20340.1 >prot_S-ischiensis_contig89.20340.1 ID=prot_S-ischiensis_contig89.20340.1|Name=mRNA_S-ischiensis_contig89.20340.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=197bp MFLVGMTRPDLASSVRELGHRAASPCMRHWRGLQHVLQYLAGTLHVCIHYback to top mRNA from alignment at S-ischiensis_contig89:44255..45691+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig89.20340.1 ID=mRNA_S-ischiensis_contig89.20340.1|Name=mRNA_S-ischiensis_contig89.20340.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1437bp|location=Sequence derived from alignment at S-ischiensis_contig89:44255..45691+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig89:44255..45691+ >mRNA_S-ischiensis_contig89.20340.1 ID=mRNA_S-ischiensis_contig89.20340.1|Name=mRNA_S-ischiensis_contig89.20340.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1182bp|location=Sequence derived from alignment at S-ischiensis_contig89:44255..45691+ (Schizocladia ischiensis KU_0333)back to top |