mRNA_S-ischiensis_contig89.20337.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig89.20337.1
Unique NamemRNA_S-ischiensis_contig89.20337.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig89.20337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig89contigS-ischiensis_contig89:30108..30823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size718
Cds size372
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817359.6568818-CDS-S-ischiensis_contig89:30107..304791622817359.6568818-CDS-S-ischiensis_contig89:30107..30479Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 30108..30479 +
1695741055.2510724-CDS-S-ischiensis_contig89:30107..304791695741055.2510724-CDS-S-ischiensis_contig89:30107..30479Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 30108..30479 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817359.6699982-UTR-S-ischiensis_contig89:30479..308231622817359.6699982-UTR-S-ischiensis_contig89:30479..30823Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 30480..30823 +
1695741055.2677736-UTR-S-ischiensis_contig89:30479..308231695741055.2677736-UTR-S-ischiensis_contig89:30479..30823Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 30480..30823 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig89.20337.1prot_S-ischiensis_contig89.20337.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig89 30108..30479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig89.20337.1

>prot_S-ischiensis_contig89.20337.1 ID=prot_S-ischiensis_contig89.20337.1|Name=mRNA_S-ischiensis_contig89.20337.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=124bp
EQSNVISHLCSCRLTWHGEGVLHLPYPAITYCTYMYEYGAYCTTSQESST
RPAKSPRAEPAVHLAQRTTVQHATSTPITELVLPPSAEGCSSASTAGAPR
GQPAAATNTLNKLGRTHAQTSHD*
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mRNA from alignment at S-ischiensis_contig89:30108..30823+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig89.20337.1 ID=mRNA_S-ischiensis_contig89.20337.1|Name=mRNA_S-ischiensis_contig89.20337.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=716bp|location=Sequence derived from alignment at S-ischiensis_contig89:30108..30823+ (Schizocladia ischiensis KU_0333)
GAGCAAAGCAACGTGATTAGCCACTTATGTAGTTGCCGTCTGACATGGCA
TGGTGAAGGGGTACTACACCTACCCTACCCAGCCATTACGTACTGCACGT
ACATGTACGAGTACGGTGCCTATTGTACTACGTCCCAGGAGAGTTCCACT
AGACCGGCCAAATCCCCGCGAGCTGAGCCGGCAGTACACCTCGCTCAGAG
GACGACAGTGCAGCACGCTACGAGTACCCCAATCACTGAACTCGTCCTGC
CGCCGTCCGCTGAGGGCTGCTCAAGCGCCTCCACAGCCGGAGCACCGCGG
GGCCAGCCAGCCGCCGCAACAAACACATTAAACAAACTGGGCCGCACGCA
CGCACAGACCTCGCACGACTGACCGCTGTACGGGGCCGAGCACTCTCTCT
CTCTCTCTCTCATACAACACAAGAAACATCACTTCTATTATGGGCTAGGA
CATGCAACTGCCTCTTGTATACACTGGTACTCGTACTACAAAGTACCAAC
TATTGTGCCACTCCAGAGGAACGAGTAGCCACCGGATAAGCTATCGGCAA
ATGAAAACCAACAGCGCGCTGTCAATGAATATGCAAAATGTCTTCTGTGC
TTAACTGTACGTGCCGTGCAAAGAAAGCGAACCGGCCCATGGCCTCCCTC
CTGTGTGCGTGCGTGCGTGAGGACAACTCGTTTATACCCCCATACTGTAC
TGTCTCCCGCCCGCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig89:30108..30823+

>mRNA_S-ischiensis_contig89.20337.1 ID=mRNA_S-ischiensis_contig89.20337.1|Name=mRNA_S-ischiensis_contig89.20337.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=744bp|location=Sequence derived from alignment at S-ischiensis_contig89:30108..30823+ (Schizocladia ischiensis KU_0333)
GAGCAAAGCAACGTGATTAGCCACTTATGTAGTTGCCGTCTGACATGGCA
TGGTGAAGGGGTACTACACCTACCCTACCCAGCCATTACGTACTGCACGT
ACATGTACGAGTACGGTGCCTATTGTACTACGTCCCAGGAGAGTTCCACT
AGACCGGCCAAATCCCCGCGAGCTGAGCCGGCAGTACACCTCGCTCAGAG
GACGACAGTGCAGCACGCTACGAGTACCCCAATCACTGAACTCGTCCTGC
CGCCGTCCGCTGAGGGCTGCTCAAGCGCCTCCACAGCCGGAGCACCGCGG
GGCCAGCCAGCCGCCGCAACAAACACATTAAACAAACTGGGCCGCACGCA
CGCACAGACCTCGCACGACTGAGAGCAAAGCAACGTGATTAGCCACTTAT
GTAGTTGCCGTCTGACATGGCATGGTGAAGGGGTACTACACCTACCCTAC
CCAGCCATTACGTACTGCACGTACATGTACGAGTACGGTGCCTATTGTAC
TACGTCCCAGGAGAGTTCCACTAGACCGGCCAAATCCCCGCGAGCTGAGC
CGGCAGTACACCTCGCTCAGAGGACGACAGTGCAGCACGCTACGAGTACC
CCAATCACTGAACTCGTCCTGCCGCCGTCCGCTGAGGGCTGCTCAAGCGC
CTCCACAGCCGGAGCACCGCGGGGCCAGCCAGCCGCCGCAACAAACACAT
TAAACAAACTGGGCCGCACGCACGCACAGACCTCGCACGACTGA
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