mRNA_S-ischiensis_contig88.20332.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig88.20332.1
Unique NamemRNA_S-ischiensis_contig88.20332.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig88.20332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig88contigS-ischiensis_contig88:523610..524791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size1182
Cds size651
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig88.20332.1prot_S-ischiensis_contig88.20332.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig88 523768..524418 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817356.4264376-UTR-S-ischiensis_contig88:523609..5237671622817356.4264376-UTR-S-ischiensis_contig88:523609..523767Schizocladia ischiensis KU_0333UTRS-ischiensis_contig88 523610..523767 +
1695741052.5062945-UTR-S-ischiensis_contig88:523609..5237671695741052.5062945-UTR-S-ischiensis_contig88:523609..523767Schizocladia ischiensis KU_0333UTRS-ischiensis_contig88 523610..523767 +
1622817356.450068-UTR-S-ischiensis_contig88:524418..5247911622817356.450068-UTR-S-ischiensis_contig88:524418..524791Schizocladia ischiensis KU_0333UTRS-ischiensis_contig88 524419..524791 +
1695741052.537859-UTR-S-ischiensis_contig88:524418..5247911695741052.537859-UTR-S-ischiensis_contig88:524418..524791Schizocladia ischiensis KU_0333UTRS-ischiensis_contig88 524419..524791 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817356.437534-CDS-S-ischiensis_contig88:523767..5244181622817356.437534-CDS-S-ischiensis_contig88:523767..524418Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 523768..524418 +
1695741052.5195472-CDS-S-ischiensis_contig88:523767..5244181695741052.5195472-CDS-S-ischiensis_contig88:523767..524418Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 523768..524418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig88.20332.1

>prot_S-ischiensis_contig88.20332.1 ID=prot_S-ischiensis_contig88.20332.1|Name=mRNA_S-ischiensis_contig88.20332.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=217bp
MPRLYRFALLAFGVAHVAHAATGAGETAPADITPIADAPQLSDGRQLSGD
RYEKIAWCGVDDWVSIDLDNKVRVPRRFGKVVVKTNRYTSKTKTFARVQV
LNRRRFAPVRPPAEDVFPSHVHNAPCNYMDGGGHWLKDIPSGIDDPTNAV
FNDLTVRSNGRYVQGRVVSDFPITRGEWRREVWSYVVHDPLDDSRLLCCD
LTVEGGRRGPFRPPNE*
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mRNA from alignment at S-ischiensis_contig88:523610..524791+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig88.20332.1 ID=mRNA_S-ischiensis_contig88.20332.1|Name=mRNA_S-ischiensis_contig88.20332.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1182bp|location=Sequence derived from alignment at S-ischiensis_contig88:523610..524791+ (Schizocladia ischiensis KU_0333)
TTGAGCGCCGTTGCTGGTACGCATAGGGCCCCAGGGCCCCATGGAGAAGA
TGCGGACGGTGAGGCATATGCGTCCCAACCCCTCTGTCACAGCGTCGTGC
AGGGTGTCGGCATTGTCGCGGCACCGCTGCAACAACACACGTGCCACTAC
AGTATCCAATGCCGCGTCTCTACAGGTTTGCGCTGCTGGCGTTCGGCGTT
GCCCATGTCGCCCACGCCGCGACAGGGGCTGGCGAAACCGCTCCGGCCGA
CATCACTCCGATCGCTGACGCTCCGCAGCTCTCCGACGGCCGACAGCTCT
CCGGGGACCGTTACGAGAAGATTGCCTGGTGCGGGGTAGACGACTGGGTC
TCCATCGATCTCGACAACAAAGTGCGGGTCCCCCGCCGTTTCGGGAAGGT
CGTAGTCAAGACCAACCGCTACACCAGCAAGACGAAGACGTTCGCCCGCG
TCCAGGTCTTGAACAGGCGGCGTTTCGCTCCGGTGAGGCCCCCGGCCGAG
GACGTCTTCCCTTCCCACGTGCACAACGCGCCGTGCAACTACATGGATGG
CGGGGGGCACTGGCTGAAGGACATCCCGAGCGGGATCGACGACCCGACGA
ACGCGGTGTTCAACGACCTCACGGTGCGTTCCAACGGGAGGTACGTCCAG
GGCAGGGTCGTTTCCGACTTTCCCATCACGCGCGGGGAGTGGAGGAGGGA
GGTGTGGTCGTACGTGGTCCACGACCCGCTCGACGACTCCCGCCTCCTCT
GCTGCGACTTAACGGTCGAGGGCGGGCGCCGGGGTCCTTTCAGGCCCCCC
AACGAGTAACGTCACAGAGTGCAGATCGTAGCTGTGGCCGTTCGGCCTCC
TCTGCTGCGAGTTCGAGTGTCGAGGGCGGGCGCCGGCGTCCTTTCAGCCC
CCCTAGCGAGAACTGCTGTAGAGTACAGCTTGTAGCTGTGGCCGTTCAGC
CTCCTCTGCTGCGACTTGAGTGCCAAGGGCGGGCGCCCGCGTCCTTTCAG
CCCGCCTAGCGAGTAACGTTGTGGAGTACAGTTTGTAGCTACGGCCGTTC
GGCGTGGCCAGCACGAGATGTCCGCCAACTCGATGCCAGCCACGGTGTGG
CGGTACTCGAATCCTGCCCGTATCGGCGTAGGGCGGTCGGCATTGCACGC
AAGGTTATGTCGCAAGACAAATCAATGAGTAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig88:523610..524791+

>mRNA_S-ischiensis_contig88.20332.1 ID=mRNA_S-ischiensis_contig88.20332.1|Name=mRNA_S-ischiensis_contig88.20332.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1302bp|location=Sequence derived from alignment at S-ischiensis_contig88:523610..524791+ (Schizocladia ischiensis KU_0333)
ATGCCGCGTCTCTACAGGTTTGCGCTGCTGGCGTTCGGCGTTGCCCATGT
CGCCCACGCCGCGACAGGGGCTGGCGAAACCGCTCCGGCCGACATCACTC
CGATCGCTGACGCTCCGCAGCTCTCCGACGGCCGACAGCTCTCCGGGGAC
CGTTACGAGAAGATTGCCTGGTGCGGGGTAGACGACTGGGTCTCCATCGA
TCTCGACAACAAAGTGCGGGTCCCCCGCCGTTTCGGGAAGGTCGTAGTCA
AGACCAACCGCTACACCAGCAAGACGAAGACGTTCGCCCGCGTCCAGGTC
TTGAACAGGCGGCGTTTCGCTCCGGTGAGGCCCCCGGCCGAGGACGTCTT
CCCTTCCCACGTGCACAACGCGCCGTGCAACTACATGGATGGCGGGGGGC
ACTGGCTGAAGGACATCCCGAGCGGGATCGACGACCCGACGAACGCGGTG
TTCAACGACCTCACGGTGCGTTCCAACGGGAGGTACGTCCAGGGCAGGGT
CGTTTCCGACTTTCCCATCACGCGCGGGGAGTGGAGGAGGGAGGTGTGGT
CGTACGTGGTCCACGACCCGCTCGACGACTCCCGCCTCCTCTGCTGCGAC
TTAACGGTCGAGGGCGGGCGCCGGGGTCCTTTCAGGCCCCCCAACGAGTA
AATGCCGCGTCTCTACAGGTTTGCGCTGCTGGCGTTCGGCGTTGCCCATG
TCGCCCACGCCGCGACAGGGGCTGGCGAAACCGCTCCGGCCGACATCACT
CCGATCGCTGACGCTCCGCAGCTCTCCGACGGCCGACAGCTCTCCGGGGA
CCGTTACGAGAAGATTGCCTGGTGCGGGGTAGACGACTGGGTCTCCATCG
ATCTCGACAACAAAGTGCGGGTCCCCCGCCGTTTCGGGAAGGTCGTAGTC
AAGACCAACCGCTACACCAGCAAGACGAAGACGTTCGCCCGCGTCCAGGT
CTTGAACAGGCGGCGTTTCGCTCCGGTGAGGCCCCCGGCCGAGGACGTCT
TCCCTTCCCACGTGCACAACGCGCCGTGCAACTACATGGATGGCGGGGGG
CACTGGCTGAAGGACATCCCGAGCGGGATCGACGACCCGACGAACGCGGT
GTTCAACGACCTCACGGTGCGTTCCAACGGGAGGTACGTCCAGGGCAGGG
TCGTTTCCGACTTTCCCATCACGCGCGGGGAGTGGAGGAGGGAGGTGTGG
TCGTACGTGGTCCACGACCCGCTCGACGACTCCCGCCTCCTCTGCTGCGA
CTTAACGGTCGAGGGCGGGCGCCGGGGTCCTTTCAGGCCCCCCAACGAGT
AA
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