mRNA_S-ischiensis_contig88.20323.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig88.20323.1
Unique NamemRNA_S-ischiensis_contig88.20323.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig88.20323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig88contigS-ischiensis_contig88:429329..429717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size323
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817355.91697-CDS-S-ischiensis_contig88:429328..4294641622817355.91697-CDS-S-ischiensis_contig88:429328..429464Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 429329..429464 +
1695741052.2057817-CDS-S-ischiensis_contig88:429328..4294641695741052.2057817-CDS-S-ischiensis_contig88:429328..429464Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 429329..429464 +
1622817355.9304888-CDS-S-ischiensis_contig88:429530..4297151622817355.9304888-CDS-S-ischiensis_contig88:429530..429715Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 429531..429715 +
1695741052.219583-CDS-S-ischiensis_contig88:429530..4297151695741052.219583-CDS-S-ischiensis_contig88:429530..429715Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 429531..429715 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig88.20323.1prot_S-ischiensis_contig88.20323.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig88 429329..429715 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig88.20323.1

>prot_S-ischiensis_contig88.20323.1 ID=prot_S-ischiensis_contig88.20323.1|Name=mRNA_S-ischiensis_contig88.20323.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=107bp
AAARSSPLARLPRGAVALAPPASPGAAAAAAAAAVVGRAWRLGGEAGPSS
SPPPPRASAGAGTPPQPPGETLLSSPPPPTAPATTVLIGLPQVSPRSLPS
LAPAAAA
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mRNA from alignment at S-ischiensis_contig88:429329..429717+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig88.20323.1 ID=mRNA_S-ischiensis_contig88.20323.1|Name=mRNA_S-ischiensis_contig88.20323.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=389bp|location=Sequence derived from alignment at S-ischiensis_contig88:429329..429717+ (Schizocladia ischiensis KU_0333)
GCCGCTGCACGCTCGTCCCCGCTGGCTCGCCTGCCGCGTGGCGCCGTGGC
ACTGGCACCGCCTGCCTCCCCAGGGGCGGCGGCGGCGGCGGCAGCGGCGG
CGGTCGTGGGGAGGGCTTGGAGACTGGGGGGTGAGGCGGGGGAGTCTAAG
GCCGGTGCCGCCGCCGCCAGCGGCGCTAGTGGCGCCCCCCCCCCGCCCGC
ACCGGGACCCTCCTCCTCGCCACCGCCTCCCAGGGCGTCGGCGGGCGCTG
GAACCCCCCCCCAGCCTCCAGGGGAGACTCTGCTGTCGTCTCCTCCTCCT
CCGACTGCTCCGGCCACCACGGTCCTCATTGGCCTGCCGCAGGTCTCCCC
CCGATCGCTCCCCTCGCTCGCCCCTGCCGCCGCCGCCGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig88:429329..429717+

>mRNA_S-ischiensis_contig88.20323.1 ID=mRNA_S-ischiensis_contig88.20323.1|Name=mRNA_S-ischiensis_contig88.20323.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=642bp|location=Sequence derived from alignment at S-ischiensis_contig88:429329..429717+ (Schizocladia ischiensis KU_0333)
GCCGCTGCACGCTCGTCCCCGCTGGCTCGCCTGCCGCGTGGCGCCGTGGC
ACTGGCACCGCCTGCCTCCCCAGGGGCGGCGGCGGCGGCGGCAGCGGCGG
CGGTCGTGGGGAGGGCTTGGAGACTGGGGGGTGAGGGCCGCTGCACGCTC
GTCCCCGCTGGCTCGCCTGCCGCGTGGCGCCGTGGCACTGGCACCGCCTG
CCTCCCCAGGGGCGGCGGCGGCGGCGGCAGCGGCGGCGGTCGTGGGGAGG
GCTTGGAGACTGGGGGGTGAGGCGGGACCCTCCTCCTCGCCACCGCCTCC
CAGGGCGTCGGCGGGCGCTGGAACCCCCCCCCAGCCTCCAGGGGAGACTC
TGCTGTCGTCTCCTCCTCCTCCGACTGCTCCGGCCACCACGGTCCTCATT
GGCCTGCCGCAGGTCTCCCCCCGATCGCTCCCCTCGCTCGCCCCTGCCGC
CGCCGCCCGGGACCCTCCTCCTCGCCACCGCCTCCCAGGGCGTCGGCGGG
CGCTGGAACCCCCCCCCAGCCTCCAGGGGAGACTCTGCTGTCGTCTCCTC
CTCCTCCGACTGCTCCGGCCACCACGGTCCTCATTGGCCTGCCGCAGGTC
TCCCCCCGATCGCTCCCCTCGCTCGCCCCTGCCGCCGCCGCC
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