mRNA_S-ischiensis_contig88.20321.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig88.20321.1
Unique NamemRNA_S-ischiensis_contig88.20321.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig88.20321.1 vs. uniprot
Match: A0A8J6C715_DIALT (Adenosylcobinamide-GDP ribazoletransferase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C715_DIALT)

HSP 1 Score: 199 bits (505), Expect = 9.320e-59
Identity = 95/159 (59.75%), Postives = 117/159 (73.58%), Query Frame = 1
Query:  151 VVSKEDVQARGAGVH-SEVDDYLAGHVFSEVRVFFTGLMFLTRLPCPAWCDHHPAYFMRSLAWFPLFGVVVGLWAAAFHGAILSLWSPEVAAVLSTLMSVWLTGCFHEDGLTDTFDGFGGGWSRREILAIMKDSRVGTYGAMGLMIFTALKFRLLTELG 624
            +VS  +V+ARG G   S +D+++A    SE+R FFTG+MF+TRLPCP WCDHHP Y MR++AWFP  G ++GLW AAF  A  +L  P VAA  ST  S+WLTGCFHEDGL DT DGFGGGWS+ +IL IMKDSR+GTY  +GL ++T  K  LL ELG
Sbjct:   29 MVSAAEVRARGTGTTASPIDEFVAAEN-SELRCFFTGMMFVTRLPCPGWCDHHPGYLMRAMAWFPALGALIGLWVAAFADAAATLVQPPVAAAFSTGASLWLTGCFHEDGLGDTLDGFGGGWSKAQILRIMKDSRIGTYACVGLCLYTVSKVLLLGELG 186          
BLAST of mRNA_S-ischiensis_contig88.20321.1 vs. uniprot
Match: A0A2P6U275_CHLSO (Adenosylcobinamide-GDP ribazoletransferase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U275_CHLSO)

HSP 1 Score: 196 bits (499), Expect = 4.700e-58
Identity = 102/196 (52.04%), Postives = 129/196 (65.82%), Query Frame = 1
Query:   61 MAPNRDGV-----KKRKPAQATGAKLQDRLDSGTSVVSKEDVQARGAGVHSEVDDYLAGH-VFSEVRVFFTGLMFLTRLPCPAWCDHHPAYFMRSLAWFPLFGVVVGLWAAAFHGAILSLWS--PEVAAVLSTLMSVWLTGCFHEDGLTDTFDGFGGGWSRREILAIMKDSRVGTYGAMGLMIFTALKFRLLTELG 624
            MAPN+ G      K+ +P    G   ++  D  +SV++KE+V+ARG+G     D Y     + SE+RVFFTG+MFLTRLP PAW DHHPAY MR++ WFPL G  +GLW AA++ A   LW   P +A  +STL +VWLTGCFHEDGL D+ DGFGGGW R +IL IMKDSRVGTY  +G  +    K  +L  LG
Sbjct:    1 MAPNKRGAAAKTDKENRPDLGPG---EEPYDYASSVITKEEVEARGSGTQEARDTYDPRRPLLSELRVFFTGIMFLTRLPVPAWVDHHPAYLMRAVMWFPLIGATIGLWGAAWYNAATLLWPQPPALAGAISTLATVWLTGCFHEDGLADSIDGFGGGWGRAQILRIMKDSRVGTYALVGTALILQAKTGVLGALG 193          
BLAST of mRNA_S-ischiensis_contig88.20321.1 vs. uniprot
Match: A8HM81_CHLRE (Adenosylcobinamide-GDP ribazoletransferase (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8HM81_CHLRE)

HSP 1 Score: 187 bits (475), Expect = 1.210e-54
Identity = 107/210 (50.95%), Postives = 131/210 (62.38%), Query Frame = 1
Query:   64 APNRDGVKKRKPAQATGAKLQDRLDSGTS-VVSKEDVQARGAGVHSEVDDYL-AGHVFSEVRVFFTGLMFLTRLPCPAWCDHHPAYFMRSLAWFPLFGVVVGLWAAAFHGAILSLWSPEVA-----AVLSTLMSVWLTGCFHEDGLTDTFDGFGGGWSRREILAIMKDSRVGTYGAMGLMIFTALKFRLLTE-LGSVQVDSPPSG--VAG 663
            AP     +K+ PA    A   +  D  +  ++SKE+V+ARGAG     D Y  A   +SE RVFFTGLMFLTRLP P   DHHPA+ +RS+ WFPL G ++G W A F  A  +LW P  A     A +ST  +VWLTGCFHEDGL DTFDGFGGGW R +IL IMKDSRVGTY  +G    TAL  +L T  L ++   +P +G  VAG
Sbjct:   27 APPPASKQKQAPANGEAAAAAEPCDFASGGMISKEEVEARGAGTDDPGDTYSRARFAWSEWRVFFTGLMFLTRLPVPPGIDHHPAFLVRSMMWFPLLGALIGGWGAVFFNAAAALWPPAAAGSLLPAAISTFSTVWLTGCFHEDGLADTFDGFGGGWGRNQILRIMKDSRVGTYALVG----TALALQLKTSGLAAIAAAAPEAGGGVAG 232          
BLAST of mRNA_S-ischiensis_contig88.20321.1 vs. uniprot
Match: R1EPP1_EMIHU (Adenosylcobinamide-GDP ribazoletransferase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EPP1_EMIHU)

HSP 1 Score: 189 bits (479), Expect = 1.630e-54
Identity = 98/196 (50.00%), Postives = 125/196 (63.78%), Query Frame = 1
Query:  145 TSVVSKEDVQARGAGV--HSEVDDYLA-----GHVFSEVRVFFTGLMFLTRLPCPAWCDHHPAYFMRSLAWFPLFGVVVGLWAAAFHGAILSLWSPEVAAVLSTLMSVWLTGCFHEDGLTDTFDGFGGGWSRREILAIMKDSRVGTYGAMGLMIFTALKFRLLTELGSVQVDSPPSGVAGGDGEDILPWLLAWLKG 711
            TS++ + +V ARG G    + +D++ A     G V SE+R F+T +MFLTRLPCP WCDHHP Y MRS+A FPL G ++G WAAAF+ A  SLW P VAA +S   ++WLTGCFHEDGL DT DGFGGGW++ +IL IM+DSR G+Y  MG  ++   K  LL ELG         G AG  G  +  W +    G
Sbjct:   54 TSMIDRSEVAARGTGTAKRTPLDEFEAAARADGLVASELRSFWTCVMFLTRLPCPGWCDHHPGYLMRSMAHFPLIGALIGAWAAAFYDAAASLWPPLVAAAVSMAGTLWLTGCFHEDGLCDTLDGFGGGWTKSQILKIMRDSRNGSYATMGGCMWVVAKAALLAELGR--------GAAGAGGASV--WAVGGSAG 239          
BLAST of mRNA_S-ischiensis_contig88.20321.1 vs. uniprot
Match: A0A2K3E738_CHLRE (Adenosylcobinamide-GDP ribazoletransferase n=2 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3E738_CHLRE)

HSP 1 Score: 187 bits (475), Expect = 4.680e-54
Identity = 107/210 (50.95%), Postives = 131/210 (62.38%), Query Frame = 1
Query:   64 APNRDGVKKRKPAQATGAKLQDRLDSGTS-VVSKEDVQARGAGVHSEVDDYL-AGHVFSEVRVFFTGLMFLTRLPCPAWCDHHPAYFMRSLAWFPLFGVVVGLWAAAFHGAILSLWSPEVA-----AVLSTLMSVWLTGCFHEDGLTDTFDGFGGGWSRREILAIMKDSRVGTYGAMGLMIFTALKFRLLTE-LGSVQVDSPPSG--VAG 663
            AP     +K+ PA    A   +  D  +  ++SKE+V+ARGAG     D Y  A   +SE RVFFTGLMFLTRLP P   DHHPA+ +RS+ WFPL G ++G W A F  A  +LW P  A     A +ST  +VWLTGCFHEDGL DTFDGFGGGW R +IL IMKDSRVGTY  +G    TAL  +L T  L ++   +P +G  VAG
Sbjct:   27 APPPASKQKQAPANGEAAAAAEPCDFASGGMISKEEVEARGAGTDDPGDTYSRARFAWSEWRVFFTGLMFLTRLPVPPGIDHHPAFLVRSMMWFPLLGALIGGWGAVFFNAAAALWPPAAAGSLLPAAISTFSTVWLTGCFHEDGLADTFDGFGGGWGRNQILRIMKDSRVGTYALVG----TALALQLKTSGLAAIAAAAPEAGGGVAG 232          
BLAST of mRNA_S-ischiensis_contig88.20321.1 vs. uniprot
Match: A0A150GZS3_GONPE (Adenosylcobinamide-GDP ribazoletransferase n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GZS3_GONPE)

HSP 1 Score: 186 bits (473), Expect = 6.410e-54
Identity = 89/156 (57.05%), Postives = 109/156 (69.87%), Query Frame = 1
Query:  136 DSGTSVVSKEDVQARGAGVHSEVDDYLAGHVF-SEVRVFFTGLMFLTRLPCPAWCDHHPAYFMRSLAWFPLFGVVVGLWAAAFHGAILSLWSPEVAAVLSTLMSVWLTGCFHEDGLTDTFDGFGGGWSRREILAIMKDSRVGTYGAMGLMIFTALK 600
            D  + V++K +V+ARG+G     D Y +   + SE RVFFTGLMFLTRLP P   DHHPA+ +RS+ WFPLFG ++G W A +  A   LW P +AA +ST  +VWLTGCFHEDGL DTFDGFGGGW R +IL IMKDSRVGTY  +G  +   LK
Sbjct:   47 DYASGVITKAEVEARGSGTDDHGDTYNSKQFWWSEYRVFFTGLMFLTRLPVPPGIDHHPAFLVRSMMWFPLFGALIGAWGAVWLNAAAVLWPPGIAAAVSTFATVWLTGCFHEDGLADTFDGFGGGWGRAQILRIMKDSRVGTYALVGTALALQLK 202          
BLAST of mRNA_S-ischiensis_contig88.20321.1 vs. uniprot
Match: A0A0M0JQR0_9EUKA (Adenosylcobinamide-GDP ribazoletransferase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JQR0_9EUKA)

HSP 1 Score: 185 bits (470), Expect = 2.600e-53
Identity = 96/190 (50.53%), Postives = 123/190 (64.74%), Query Frame = 1
Query:  127 DRLDSGTSVVSKEDVQARGAG--VHSEVDDYLAGHVFSEVRVFFTGLMFLTRLPCPAWCDHHPAYFMRSLAWFPLFGVVVGLWAAAFHGAILSLWSPEVAAVLSTLMSVWLTGCFHEDGLTDTFDGFGGGWSRREILAIMKDSRVGTYGAMGLMIFTALKFRLLTELGSVQVDSP--PSGVAGGDGEDIL 684
            D   +G   +S   V +RG G  V + ++++ A     E+R FFTG+MFLTRLPCP WCDHHP Y MR +A+FP+ G ++GLWAAAF+ A  SLW P VAAVLS+  ++WLTGCFHEDGL DT DGFGGGW++ +IL IMKDSR G+Y  MG  ++   K   L  LG   V       G + G G  I+
Sbjct:   44 DGFGAGDRPISAAVVASRGTGTAVRTPLEEFEA-LPRDELRCFFTGVMFLTRLPCPGWCDHHPGYLMRGMAYFPVLGALIGLWAAAFYDAAASLWPPLVAAVLSSGATLWLTGCFHEDGLCDTLDGFGGGWTKAQILRIMKDSRNGSYATMGGCLWVVAKSAALARLGEGSVSGSVWALGASVGAGPSIV 232          
BLAST of mRNA_S-ischiensis_contig88.20321.1 vs. uniprot
Match: A0A2V0NMZ4_9CHLO (Adenosylcobinamide-GDP ribazoletransferase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NMZ4_9CHLO)

HSP 1 Score: 182 bits (462), Expect = 8.840e-53
Identity = 90/153 (58.82%), Postives = 107/153 (69.93%), Query Frame = 1
Query:  145 TSVVSKEDVQARGAGV-HSEVDDYLAGHVFSEVRVFFTGLMFLTRLPCPAWCDHHPAYFMRSLAWFPLFGVVVGLWAAAFHGAILSLWSPEVAAVLSTLMSVWLTGCFHEDGLTDTFDGFGGGWSRREILAIMKDSRVGTYGAMGLMIFTALK 600
            +SV+S E++ ARG G    E  D   G + +EVRVFFTGLMFLTRLP PA  DHHP Y MRS  +FPL G VVGLW A F+ A   LWSP VAA  S L +VWLTGCFHEDG+ D  DGFGGGW + +IL IM+DSRVGTY  +G+ +   +K
Sbjct:   15 SSVLSAEEIAARGCGTDEGEGTDSYDGSLAAEVRVFFTGLMFLTRLPVPAGTDHHPTYLMRSTMYFPLIGAVVGLWGAVFYEAGTVLWSPAVAAGASLLATVWLTGCFHEDGMADCIDGFGGGWGKAQILRIMRDSRVGTYALVGMAVLLQIK 167          
BLAST of mRNA_S-ischiensis_contig88.20321.1 vs. uniprot
Match: A0A835WCG3_CHLIN (Adenosylcobinamide-GDP ribazoletransferase n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835WCG3_CHLIN)

HSP 1 Score: 182 bits (463), Expect = 2.930e-52
Identity = 89/154 (57.79%), Postives = 106/154 (68.83%), Query Frame = 1
Query:  154 VSKEDVQARGAGVHSEVDDYLAGH-VFSEVRVFFTGLMFLTRLPCPAWCDHHPAYFMRSLAWFPLFGVVVGLWAAAFHGAILSLWSPEVAAVL----STLMSVWLTGCFHEDGLTDTFDGFGGGWSRREILAIMKDSRVGTYGAMGLMIFTALK 600
            +SKE+V+ARGAG     D Y      +SE RVFFTGLMFLTRLP P   DHHPA+ +RS+ WFPL G ++G W A F+ A  +LW P   ++L    ST  +VWLTGCFHEDGL DTFDGFGGGW R +IL IMKDSRVGTY  +G  +   LK
Sbjct:   60 ISKEEVEARGAGTDDHGDTYTRNRFAWSEWRVFFTGLMFLTRLPVPPGIDHHPAFLVRSMMWFPLLGAIIGGWGAVFYNAAAALWPPAAGSLLPAAISTFSTVWLTGCFHEDGLADTFDGFGGGWGRSQILRIMKDSRVGTYALVGTALALQLK 213          
BLAST of mRNA_S-ischiensis_contig88.20321.1 vs. uniprot
Match: W7TEQ4_9STRA (Adenosylcobinamide-GDP ribazoletransferase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TEQ4_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.430e-46
Identity = 84/168 (50.00%), Postives = 111/168 (66.07%), Query Frame = 1
Query:  136 DSGTSVVSKEDVQARGAGVHSEVDDYL-AGHVFSEVRVFFTGLMFLTRLPCPAWC--DHHPAYFMRSLAWFPLFGVVVGLWAAAFHGAILSLWSPEVAAVLSTLMSVWLTGCFHEDGLTDTFDGFGGGWSRREILAIMKDSRVGTYGAMGLMIFTALKFRLLTELGSV 630
            D+  SV+SK++++ RGAG   + D Y+    +  E RVFFT ++FLTRL  P W   DHHPAY MRS+  FP  G+ VG+WAA +  A   LW+P VAA  STL  VW+TG FHEDGL D+ D FGGGW R +IL IM D+RVGTY  +G+++   +K + L  L S+
Sbjct:   38 DNDLSVISKKEIEDRGAGTDEDTDTYVDLPFLRGEKRVFFTAVIFLTRLNVPRWAEADHHPAYLMRSMMHFPFLGLCVGIWAAVWLEAAAVLWTPFVAAAASTLAGVWITGAFHEDGLADSLDAFGGGWGRLQILRIMTDTRVGTYALVGMILVMGMKLKSLEVLQSL 205          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig88.20321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J6C715_DIALT9.320e-5959.75Adenosylcobinamide-GDP ribazoletransferase n=1 Tax... [more]
A0A2P6U275_CHLSO4.700e-5852.04Adenosylcobinamide-GDP ribazoletransferase n=1 Tax... [more]
A8HM81_CHLRE1.210e-5450.95Adenosylcobinamide-GDP ribazoletransferase (Fragme... [more]
R1EPP1_EMIHU1.630e-5450.00Adenosylcobinamide-GDP ribazoletransferase n=1 Tax... [more]
A0A2K3E738_CHLRE4.680e-5450.95Adenosylcobinamide-GDP ribazoletransferase n=2 Tax... [more]
A0A150GZS3_GONPE6.410e-5457.05Adenosylcobinamide-GDP ribazoletransferase n=1 Tax... [more]
A0A0M0JQR0_9EUKA2.600e-5350.53Adenosylcobinamide-GDP ribazoletransferase n=1 Tax... [more]
A0A2V0NMZ4_9CHLO8.840e-5358.82Adenosylcobinamide-GDP ribazoletransferase n=1 Tax... [more]
A0A835WCG3_CHLIN2.930e-5257.79Adenosylcobinamide-GDP ribazoletransferase n=1 Tax... [more]
W7TEQ4_9STRA1.430e-4650.00Adenosylcobinamide-GDP ribazoletransferase n=2 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig88contigS-ischiensis_contig88:415639..418509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.5
Seed ortholog evalue5.6e-47
Seed eggNOG ortholog3055.EDP09848
EggNOG free text desc.Cobalamin-5-phosphate synthase
EggNOG OGs2S20I@2759,COG0368@1
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size714
Cds size711
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig88.20321.1prot_S-ischiensis_contig88.20321.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig88 415639..418508 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817358.319284-CDS-S-ischiensis_contig88:415638..4158751622817358.319284-CDS-S-ischiensis_contig88:415638..415875Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 415639..415875 +
1695741054.1595173-CDS-S-ischiensis_contig88:415638..4158751695741054.1595173-CDS-S-ischiensis_contig88:415638..415875Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 415639..415875 +
1622817358.3303378-CDS-S-ischiensis_contig88:416675..4168951622817358.3303378-CDS-S-ischiensis_contig88:416675..416895Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 416676..416895 +
1695741054.1752572-CDS-S-ischiensis_contig88:416675..4168951695741054.1752572-CDS-S-ischiensis_contig88:416675..416895Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 416676..416895 +
1622817358.3414624-CDS-S-ischiensis_contig88:417775..4179791622817358.3414624-CDS-S-ischiensis_contig88:417775..417979Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 417776..417979 +
1695741054.186433-CDS-S-ischiensis_contig88:417775..4179791695741054.186433-CDS-S-ischiensis_contig88:417775..417979Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 417776..417979 +
1622817358.3522892-CDS-S-ischiensis_contig88:418458..4185081622817358.3522892-CDS-S-ischiensis_contig88:418458..418508Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 418459..418508 +
1695741054.1999812-CDS-S-ischiensis_contig88:418458..4185081695741054.1999812-CDS-S-ischiensis_contig88:418458..418508Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 418459..418508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig88.20321.1

>prot_S-ischiensis_contig88.20321.1 ID=prot_S-ischiensis_contig88.20321.1|Name=mRNA_S-ischiensis_contig88.20321.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=237bp
TSTCEAPRPLQDRLLRAPAIMAPNRDGVKKRKPAQATGAKLQDRLDSGTS
VVSKEDVQARGAGVHSEVDDYLAGHVFSEVRVFFTGLMFLTRLPCPAWCD
HHPAYFMRSLAWFPLFGVVVGLWAAAFHGAILSLWSPEVAAVLSTLMSVW
LTGCFHEDGLTDTFDGFGGGWSRREILAIMKDSRVGTYGAMGLMIFTALK
FRLLTELGSVQVDSPPSGVAGGDGEDILPWLLAWLKG
back to top

mRNA from alignment at S-ischiensis_contig88:415639..418509+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig88.20321.1 ID=mRNA_S-ischiensis_contig88.20321.1|Name=mRNA_S-ischiensis_contig88.20321.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2871bp|location=Sequence derived from alignment at S-ischiensis_contig88:415639..418509+ (Schizocladia ischiensis KU_0333)
ACGAGCACCTGTGAAGCACCTCGGCCCTTGCAGGATCGCCTCCTGCGCGC GCCTGCCATCATGGCTCCCAATCGCGATGGCGTGAAAAAGAGGAAGCCAG CTCAAGCGACGGGGGCCAAGCTGCAAGACCGGTTGGACAGCGGGACGAGC GTAGTCAGCAAGGAGGACGTGCAGGCGCGAGGCGCGGGCGTGCACTCCGA GGTCGACGACTACCTCGCCGGCCACGTGTTCTCAGAGGTGAGGGCTACGG AGCGCTTGCTTCAGCCTATGCTGCGCACGCACAAGTGCAGTAGGCCCGAC ACTGAGCAGTGCAGGGTTAGGGTCGGGGAAGTAAGCAGCGGGGGCCCGAC AGCCTCTCAGTGGGAAATCTCTCATGCCCACGACACGCTGCTGCTGCACA GCATTTTGGTGTACTCGTAGTTGTCGTTAAACCGCTGGGTTTGTCACCGG GCATGGTGCAGGGGGATGTAGCGGTTGCTATGCTGTTAGTACGCACTGTA CTGTAGGAGCTGCTGCAGCGGCAACCAGTGCCGGCCCCCTGTTGCCCATC GCAACCCACATGTACTTTTACAGCTTCGCTGTCAACCCCTCCCCTCCCGA GTGATGGAATATCGATCACTAGATAGTTATCGGGCTCGGCTGACTTTGCG GGTGGCGTTGCCAACCACTCGAGCACTCGGATGTTCAACTATCGAATATC GACTACTGTACAATATCGATAGATATAGTTTTGGCACGGGGCCTGGAACT CGCCGCTTATCTACCACTCAAAATAGATCACTACTGTCGATAAATAGGTT GATTTGCTTGCATATTCCATCGCTGCCCTCCCCTCCCCCGCAGGTGCGAG TGTTCTTCACGGGGCTCATTTTCCTCACTCCTTGGATTCGGTGTGGGTCA AACTATCGAATGTCGACTACCTTGGGTTGTTGGGAGGGGGCCCGGAACTC GCATTCATCAAAACTAGTTTCAATATCGATATATATATATATCAGTGCTG TTGATAAATAGGTTGATTTGCTTCCCCTCCCCCGCAGGTGCGAGTGTTCT TCACGGGCCTCATGTTCCTCACCCGGCTGCCCTGCCCGGCCTGGTGCGAC CACCACCCGGCCTACTTCATGCGCAGCCTCGCCTGGTTCCCTCTGTTCGG CGTGGTGGTGGGCCTCTGGGCCGCCGCCTTCCATGGCGCGATCCTCTCCC TCTGGAGCCCGGAGGTGGCGGCGGTGCTGTCGACGCTCATGTCCGTGTGG CTGACTGGTGGGTGCCCGTGCTACGGTGATGGAATATCGGTCAGCAGATA GTTATCGGGCTCGACTGATTTTGCGGGTGGCGTTACTAACTGCTTGGATT TAGTGTGGGTCAAACTATCGAATATCGACTATCGATAGACAGATACATCT TCTTGCCCTGCGAGGGGAAGAAGGGGTTCGTTGAGTCCCGTTTCGGGACG AGCCTTTTGGCACCGGGCCTGGAACTCGCTGCTTATCTGCCACTCAAATA TAGAGCAGTGCTGTCCATAAATAGGTTGATTTGCTTGGATAGTCCATCAC TGCCGTGCCATATCTGCTGTAGTGCATGGGTGCGTGCGTGCGCTCTACAC AACACGTGTGTGTTACGGGTGCTCAGTAGAGCTGTGACCTGGCAAAGCCT ACCAATTGAACAGTTGACCGGTCTTGTGACCGGTCGGTTCTTACTGGTTT GCCGGTAACGGCCAAATGTATTGCCAAAAATAACGGATAACGGCCCTGTC ATCCACTTCGGCTGACCGGTGGGTGCCCGTGTGCAAAATCTTCTGTGGTG CATGGGTGCGTGTGTGTGTGCGCGCTCTATGCAATACCTGCACAGACACC TTGAACAATATGAAGCGAGAGCCGATGATCACGTGGCTGCTTGCCACGAC ATCGACACACGTGTGACGGCTGCCCGTACGAGTAAGTAATTTTTTGCTTA CGGGCCCCTGAAAGGGCGTTTTGTAAAAGAATAAATCGGAACATTTCTCA CGTGAGTACGATTTTTGCCGTTGCCGCCCGTAGCTACTGTAAGAAGAAAA AAACTCGAACAAAAACTTTGTGCAAACAACCTCTTGCTTGCCATTTTTTC ATTTCAGTTCTCATTTGTGCTCTATTGCAACATGCAGGCTGCTTCCATGA GGACGGGCTCACGGACACCTTTGACGGCTTCGGCGGGGGCTGGAGCCGAA GGGAGATTCTCGCCATAATGAAGGACTCTCGCGTCGGCACGTACGGAGCC ATGGGCCTCATGATCTTCACCGCCCTCAAGTTTAGACTGCTCACGGAGCT GGGGAGCGTACAAGTAGATTCCCCTCCCTCGGGGGTTGCAGGTGGGTTGG GGCTATGTGGTGTGATGTGTGGCATGTGGGTGCTGCGGTGTGATGTGATG TGAAAATACATTAAAAACATCGCGATCTTCACCGCCCTTAAGTTTCGCCT GCTCACGGAGTTGGGGAATGTAGGAGTAGGTGCTCTTGGCAACCCGGGGG CGGCGGCGGCGGGGGGTGCACGTGGGTTGTGATTTCGCGTGCAAGAATAA TAGACACTACAGTGTGTGTGTACTGTATCGGCGCCGTTCGATTCCGTCGC CTACAATCTCTGAGGTCCTTGGGTCCTCCGACCCGGGGGCGGTGGCGGTG GTGGCGGCGGGGGCCCCTGCCCCGGGGGGGGTTCACGTCGGTTGGCGTTT CGCGTGCACGTGGGGCGTGTGGGCGATGGTGCTGTGATGCGACGGGGTTT GATGGGATGTCAAAGTACTAATAATAGTAACAATATAGTACTCGTATATG AAAAACATCGCCTTCACCAGGTGGGGACGGCGAAGACATCTTGCCGTGGC TCCTCGCGTGGCTCAAGGGCG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig88:415639..418509+

>mRNA_S-ischiensis_contig88.20321.1 ID=mRNA_S-ischiensis_contig88.20321.1|Name=mRNA_S-ischiensis_contig88.20321.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1422bp|location=Sequence derived from alignment at S-ischiensis_contig88:415639..418509+ (Schizocladia ischiensis KU_0333)
ACGAGCACCTGTGAAGCACCTCGGCCCTTGCAGGATCGCCTCCTGCGCGC
GCCTGCCATCATGGCTCCCAATCGCGATGGCGTGAAAAAGAGGAAGCCAG
CTCAAGCGACGGGGGCCAAGCTGCAAGACCGGTTGGACAGCGGGACGAGC
GTAGTCAGCAAGGAGGACGTGCAGGCGCGAGGCGCGGGCGTGCACTCCGA
GGTCGACGACTACCTCGCCGGCCACGTGTTCTCAGAGACGAGCACCTGTG
AAGCACCTCGGCCCTTGCAGGATCGCCTCCTGCGCGCGCCTGCCATCATG
GCTCCCAATCGCGATGGCGTGAAAAAGAGGAAGCCAGCTCAAGCGACGGG
GGCCAAGCTGCAAGACCGGTTGGACAGCGGGACGAGCGTAGTCAGCAAGG
AGGACGTGCAGGCGCGAGGCGCGGGCGTGCACTCCGAGGTCGACGACTAC
CTCGCCGGCCACGTGTTCTCAGAGGTGCGAGTGTTCTTCACGGGCCTCAT
GTTCCTCACCCGGCTGCCCTGCCCGGCCTGGTGCGACCACCACCCGGCCT
ACTTCATGCGCAGCCTCGCCTGGTTCCCTCTGTTCGGCGTGGTGGTGGGC
CTCTGGGCCGCCGCCTTCCATGGCGCGATCCTCTCCCTCTGGAGCCCGGA
GGTGGCGGCGGTGCTGTCGACGCTCATGTCCGTGTGGCTGACTGGTGCGA
GTGTTCTTCACGGGCCTCATGTTCCTCACCCGGCTGCCCTGCCCGGCCTG
GTGCGACCACCACCCGGCCTACTTCATGCGCAGCCTCGCCTGGTTCCCTC
TGTTCGGCGTGGTGGTGGGCCTCTGGGCCGCCGCCTTCCATGGCGCGATC
CTCTCCCTCTGGAGCCCGGAGGTGGCGGCGGTGCTGTCGACGCTCATGTC
CGTGTGGCTGACTGGCTGCTTCCATGAGGACGGGCTCACGGACACCTTTG
ACGGCTTCGGCGGGGGCTGGAGCCGAAGGGAGATTCTCGCCATAATGAAG
GACTCTCGCGTCGGCACGTACGGAGCCATGGGCCTCATGATCTTCACCGC
CCTCAAGTTTAGACTGCTCACGGAGCTGGGGAGCGTACAAGTAGATTCCC
CTCCCTCGGGGGTTGCAGGCTGCTTCCATGAGGACGGGCTCACGGACACC
TTTGACGGCTTCGGCGGGGGCTGGAGCCGAAGGGAGATTCTCGCCATAAT
GAAGGACTCTCGCGTCGGCACGTACGGAGCCATGGGCCTCATGATCTTCA
CCGCCCTCAAGTTTAGACTGCTCACGGAGCTGGGGAGCGTACAAGTAGAT
TCCCCTCCCTCGGGGGTTGCAGGTGGGGACGGCGAAGACATCTTGCCGTG
GCTCCTCGCGTGGCTCAAGGGCGTGGGGACGGCGAAGACATCTTGCCGTG
GCTCCTCGCGTGGCTCAAGGGC
back to top