mRNA_S-ischiensis_contig88.20304.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig88.20304.1
Unique NamemRNA_S-ischiensis_contig88.20304.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig88.20304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig88contigS-ischiensis_contig88:194041..195279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size727
Cds size726
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817355.5511167-CDS-S-ischiensis_contig88:194040..1944831622817355.5511167-CDS-S-ischiensis_contig88:194040..194483Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 194041..194483 +
1695741051.9109576-CDS-S-ischiensis_contig88:194040..1944831695741051.9109576-CDS-S-ischiensis_contig88:194040..194483Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 194041..194483 +
1622817355.5642307-CDS-S-ischiensis_contig88:194996..1952791622817355.5642307-CDS-S-ischiensis_contig88:194996..195279Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 194997..195279 +
1695741051.9283028-CDS-S-ischiensis_contig88:194996..1952791695741051.9283028-CDS-S-ischiensis_contig88:194996..195279Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 194997..195279 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig88.20304.1prot_S-ischiensis_contig88.20304.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig88 194041..195279 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig88.20304.1

>prot_S-ischiensis_contig88.20304.1 ID=prot_S-ischiensis_contig88.20304.1|Name=mRNA_S-ischiensis_contig88.20304.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=242bp
RRTGRRRKFQRKQRVFFVVARSRRAARARASAPADRGGGLVAGFPPPAGG
VGGGVPRGAGVRRGGHGPPGRGMGGFAKSGFGFGRKCRGCRNCCGGGGSS
RGGHAGGLRRAVPTRGCGTGGAGRGGAVGGAERGVRVGGVPGDCGLGRSR
VGRDGPPGGCSRLHLCGPRPDPPRAFLQPVWVYPRCPPPPPGSTQTCRTR
VYHRSRRRHRRRRPDGGERGRKGGRCGCVCCEGSCGGGGAG*
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mRNA from alignment at S-ischiensis_contig88:194041..195279+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig88.20304.1 ID=mRNA_S-ischiensis_contig88.20304.1|Name=mRNA_S-ischiensis_contig88.20304.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1239bp|location=Sequence derived from alignment at S-ischiensis_contig88:194041..195279+ (Schizocladia ischiensis KU_0333)
AGGAGGACGGGGAGGAGGAGGAAGTTTCAACGGAAACAACGGGTCTTCTT
CGTCGTCGCGAGGAGCAGGAGGGCGGCGAGGGCGAGGGCGAGCGCTCCCG
CGGATCGGGGCGGTGGCCTCGTGGCCGGTTTTCCACCACCTGCTGGTGGC
GTTGGCGGAGGCGTTCCGCGCGGCGCTGGTGTGCGGCGCGGTGGACATGG
CCCTCCCGGCCGCGGCATGGGCGGTTTCGCAAAAAGCGGTTTCGGTTTCG
GCCGAAAGTGCCGAGGGTGTCGTAACTGTTGCGGCGGCGGCGGCAGCAGT
CGTGGCGGGCACGCTGGCGGGTTGCGGCGGGCTGTTCCTACCCGGGGATG
CGGGACTGGGGGCGCTGGACGCGGGGGTGCCGTGGGCGGTGCAGAGCGCG
GTGTACGGGTCGGCGGGGTACCTGGCGACTGTGGCCTGGGCAGGTGCGTG
CACTTGGTGGTTCGTATAGTTTGTAACGAGGTAGCGTACAATCGCACGTG
TGTGTTATCGAGTGTTCTCGCATAACTGGTTATCCCATTTGGGCCATTTA
AGAATTGAGTGTTCTGCAGACGCTGTCGGGTTCACCACGTTTCCGCCGGA
TGCCTTTGCTGGAGAACTGCGGCTGCAGTCAGAGCGGGTGCTCTCGTGGA
ATGCTGCTGTACACGGGGTAGGCTGACCCTCCCCCCCCCTTCTCCTCCTG
CCCCCCTCCCCCTCCCCCCCCCCCCCCCCTCCCCTCCCCCTCCCCCTCCC
CCCCCCCCCCTCCCCCCCCCTCCCCCTCCCCTCCCCCTCCCCCTCCCCCC
CCCCTCCCCCTCCCCCCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCC
CTCCCCATCCCCCTCCCCCTCCCCCCCCCCCTCCCCCTCCCCCCCCCCCC
CCCCCTCCCCCTCCCCCCTCCTCCCCCCCACCCGCCCGCCCGTGCCTCCT
CTCCAGGTCCCGCGTGGGCAGGGACGGCCCACCTGGTGGTTGCTCTCGTC
TTCATCTCTGTGGCCCTCGTCCAGACCCACCGCGGGCCTTCCTTCAACCC
GTTTGGGTTTATCCACGGTGTCCTCCACCGCCTCCTGGCTCTACACAAAC
CTGCCGGACCCGTGTCTACCACCGGAGCCGCCGCCGCCACCGCCGCCGCC
GTCCCGACGGGGGCGAGCGCGGCCGGAAGGGCGGCCGCTGCGGCTGTGTC
TGCTGCGAGGGCAGTTGTGGAGGAGGAGGAGCAGGATGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig88:194041..195279+

>mRNA_S-ischiensis_contig88.20304.1 ID=mRNA_S-ischiensis_contig88.20304.1|Name=mRNA_S-ischiensis_contig88.20304.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1452bp|location=Sequence derived from alignment at S-ischiensis_contig88:194041..195279+ (Schizocladia ischiensis KU_0333)
AGGAGGACGGGGAGGAGGAGGAAGTTTCAACGGAAACAACGGGTCTTCTT
CGTCGTCGCGAGGAGCAGGAGGGCGGCGAGGGCGAGGGCGAGCGCTCCCG
CGGATCGGGGCGGTGGCCTCGTGGCCGGTTTTCCACCACCTGCTGGTGGC
GTTGGCGGAGGCGTTCCGCGCGGCGCTGGTGTGCGGCGCGGTGGACATGG
CCCTCCCGGCCGCGGCATGGGCGGTTTCGCAAAAAGCGGTTTCGGTTTCG
GCCGAAAGTGCCGAGGGTGTCGTAACTGTTGCGGCGGCGGCGGCAGCAGT
CGTGGCGGGCACGCTGGCGGGTTGCGGCGGGCTGTTCCTACCCGGGGATG
CGGGACTGGGGGCGCTGGACGCGGGGGTGCCGTGGGCGGTGCAGAGCGCG
GTGTACGGGTCGGCGGGGTACCTGGCGACTGTGGCCTGGGCAGAGGAGGA
CGGGGAGGAGGAGGAAGTTTCAACGGAAACAACGGGTCTTCTTCGTCGTC
GCGAGGAGCAGGAGGGCGGCGAGGGCGAGGGCGAGCGCTCCCGCGGATCG
GGGCGGTGGCCTCGTGGCCGGTTTTCCACCACCTGCTGGTGGCGTTGGCG
GAGGCGTTCCGCGCGGCGCTGGTGTGCGGCGCGGTGGACATGGCCCTCCC
GGCCGCGGCATGGGCGGTTTCGCAAAAAGCGGTTTCGGTTTCGGCCGAAA
GTGCCGAGGGTGTCGTAACTGTTGCGGCGGCGGCGGCAGCAGTCGTGGCG
GGCACGCTGGCGGGTTGCGGCGGGCTGTTCCTACCCGGGGATGCGGGACT
GGGGGCGCTGGACGCGGGGGTGCCGTGGGCGGTGCAGAGCGCGGTGTACG
GGTCGGCGGGGTACCTGGCGACTGTGGCCTGGGCAGGTCCCGCGTGGGCA
GGGACGGCCCACCTGGTGGTTGCTCTCGTCTTCATCTCTGTGGCCCTCGT
CCAGACCCACCGCGGGCCTTCCTTCAACCCGTTTGGGTTTATCCACGGTG
TCCTCCACCGCCTCCTGGCTCTACACAAACCTGCCGGACCCGTGTCTACC
ACCGGAGCCGCCGCCGCCACCGCCGCCGCCGTCCCGACGGGGGCGAGCGC
GGCCGGAAGGGCGGCCGCTGCGGCTGTGTCTGCTGCGAGGGCAGTTGTGG
AGGAGGAGGAGCAGGATGAGTCCCGCGTGGGCAGGGACGGCCCACCTGGT
GGTTGCTCTCGTCTTCATCTCTGTGGCCCTCGTCCAGACCCACCGCGGGC
CTTCCTTCAACCCGTTTGGGTTTATCCACGGTGTCCTCCACCGCCTCCTG
GCTCTACACAAACCTGCCGGACCCGTGTCTACCACCGGAGCCGCCGCCGC
CACCGCCGCCGCCGTCCCGACGGGGGCGAGCGCGGCCGGAAGGGCGGCCG
CTGCGGCTGTGTCTGCTGCGAGGGCAGTTGTGGAGGAGGAGGAGCAGGAT
GA
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