mRNA_S-ischiensis_contig88.20303.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig88.20303.1
Unique NamemRNA_S-ischiensis_contig88.20303.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig88.20303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig88contigS-ischiensis_contig88:191992..193648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-20_002970.1
Exons3
Model size370
Cds size369
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig88.20303.1prot_S-ischiensis_contig88.20303.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig88 191992..193648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817357.059416-CDS-S-ischiensis_contig88:191991..1920691622817357.059416-CDS-S-ischiensis_contig88:191991..192069Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 191992..192069 +
1695741053.1734333-CDS-S-ischiensis_contig88:191991..1920691695741053.1734333-CDS-S-ischiensis_contig88:191991..192069Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 191992..192069 +
1622817357.0763545-CDS-S-ischiensis_contig88:192713..1929601622817357.0763545-CDS-S-ischiensis_contig88:192713..192960Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 192714..192960 +
1695741053.1862438-CDS-S-ischiensis_contig88:192713..1929601695741053.1862438-CDS-S-ischiensis_contig88:192713..192960Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 192714..192960 +
1622817357.0874276-CDS-S-ischiensis_contig88:193604..1936481622817357.0874276-CDS-S-ischiensis_contig88:193604..193648Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 193605..193648 +
1695741053.1980739-CDS-S-ischiensis_contig88:193604..1936481695741053.1980739-CDS-S-ischiensis_contig88:193604..193648Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 193605..193648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig88.20303.1

>prot_S-ischiensis_contig88.20303.1 ID=prot_S-ischiensis_contig88.20303.1|Name=mRNA_S-ischiensis_contig88.20303.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=123bp
GKSRGVAAAVEPWVLPAGLAVYMLRQVATHENRTFWSSVLLSRLLPWVAS
PGRLAAALAALASAAEVVRLSQPEGLVEAGAFTAAVMAAARVRRVWEREG
EERRKVAAGPVPTGKPTSTSSAG
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mRNA from alignment at S-ischiensis_contig88:191992..193648+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig88.20303.1 ID=mRNA_S-ischiensis_contig88.20303.1|Name=mRNA_S-ischiensis_contig88.20303.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1657bp|location=Sequence derived from alignment at S-ischiensis_contig88:191992..193648+ (Schizocladia ischiensis KU_0333)
GGGAAATCGCGGGGGGTGGCGGCGGCTGTGGAGCCGTGGGTGCTGCCTGC
GGGCTTGGCCGTCTACATGCTACGACAGGCGAGTGCCACGTTCTTTGGAC
GTACAGTACTTACGTGCTTTCAAGTAGTTGGGAGACGGAGAGTGATTCGC
GGTGCCCAACCAAGTAGTTAAGGGCCTGGGTTTTGAGACAACCCAAGTGG
TTAGGAGACTGGAGATTTTTTTCGAGGCGTTTTCCCCCGAGTAGTTTGGA
GACTGAGCCGAGACACCTGAGTGTGTGTATACTACGTACAGTAGTATATA
TACTCGTATGCGACATATCCTTGCATGCAATTCCGACATATCCTTGCATG
CAATGCCGACAGTGTGTCGCGCATGTGTGTGTGTTCTGCACGTGTGTGTG
CCCGCACGTGCGTGCTATGCGCGTGAGGGTGTGTGTGCGTGCGCATGTGT
GATTGTGTGCGTGCGGGCTTGCATGAACGTGTGCATGCGCCCGTGCAGTA
TGTGTGCGTGTGTGCACGCACGTGTGCGCTAAGCGCACGAGGGTGTGTGT
GCACATGCATGTGTAGTCGTGCGCGTGCGGGCTTGCATGCACGTGTACGC
GCGCCCGCACAGTATGTGTGTGTGTGTGTGTGCACGCGTGCGTTTGCTGA
TCCCGCCACCGCCACCCATCCCCACCCCCCCCACGACCACCACGACCACC
CCCACCACTGCCCCCCAACCAGGTTGCCACCCATGAGAACCGCACGTTCT
GGTCGTCGGTGCTGCTCTCCCGCCTGCTCCCCTGGGTGGCGTCCCCTGGC
CGCCTCGCGGCGGCACTTGCCGCCCTAGCGTCCGCTGCGGAGGTGGTCCG
GCTGTCCCAGCCCGAGGGTTTGGTAGAGGCGGGGGCGTTCACGGCCGCGG
TCATGGCGGCGGCGCGGGTGCGCCGCGTGTGGGAGAGGGAGGGCGAGGAA
CGGAGGAAGGTTGCTGCAGGTGAGGAGGGACACAGGGATTGCTGCATATG
TCGAGTACTCGTACTCACATTGTGCTTGCCGTAAGTAGTCCCGAGACCAT
TGACCGCGCGCCTCGGTTGAGATGGAGCAGGAACCCTCCCTCCCCTGGCA
TCAACTACAAATACGAGAACAGTCAATCGCACACACGTGCGATTGTACCT
CGTTACAATTTATATGAATCACCTCCCTCCCCTGGCAGAGCAGGGTGGGA
GGGGGTGAATTATTGCTGTACTGGGGGATATGCGGCGTTGTGAAGTGGAA
ATAGGTCAGCCAGCTCCCCCCCCCCCGGGGTCCCACAGTGGGGCCTCACC
AGAAGCCTTTGCTGCGCTCACGGGGCAGGAAAGCGACGATGAACAGCTAC
TAGTGGTTGGTGGATCGGAAACCTGTCCCTCTTCCTTTCTTGTTTCTCTT
TACTATTCTGCTCTGTACGCCCTGCGAGCCAAGGCGAGTGAAACGAAGGG
CTTCCGGGGGTGGTGGGCCGCTGAACTCGCGTAAGTGTGAACACCTCGTC
TTTCCCACTCGCTTGTTTGTGTTCTTGCAAAAAACCTGCCCCCTCCGACC
GCGCCGCCCCGCCCCCAGCGCCCACGCCCCCATGCCCCCCCCGCCTGCCC
GCCGCCGCCCCAGGCCCAGTGCCGACCGGAAAGCCAACTTCAACTTCCTC
GGCAGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig88:191992..193648+

>mRNA_S-ischiensis_contig88.20303.1 ID=mRNA_S-ischiensis_contig88.20303.1|Name=mRNA_S-ischiensis_contig88.20303.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=738bp|location=Sequence derived from alignment at S-ischiensis_contig88:191992..193648+ (Schizocladia ischiensis KU_0333)
GGGAAATCGCGGGGGGTGGCGGCGGCTGTGGAGCCGTGGGTGCTGCCTGC
GGGCTTGGCCGTCTACATGCTACGACAGGGGAAATCGCGGGGGGTGGCGG
CGGCTGTGGAGCCGTGGGTGCTGCCTGCGGGCTTGGCCGTCTACATGCTA
CGACAGGTTGCCACCCATGAGAACCGCACGTTCTGGTCGTCGGTGCTGCT
CTCCCGCCTGCTCCCCTGGGTGGCGTCCCCTGGCCGCCTCGCGGCGGCAC
TTGCCGCCCTAGCGTCCGCTGCGGAGGTGGTCCGGCTGTCCCAGCCCGAG
GGTTTGGTAGAGGCGGGGGCGTTCACGGCCGCGGTCATGGCGGCGGCGCG
GGTGCGCCGCGTGTGGGAGAGGGAGGGCGAGGAACGGAGGAAGGTTGCTG
CAGGTTGCCACCCATGAGAACCGCACGTTCTGGTCGTCGGTGCTGCTCTC
CCGCCTGCTCCCCTGGGTGGCGTCCCCTGGCCGCCTCGCGGCGGCACTTG
CCGCCCTAGCGTCCGCTGCGGAGGTGGTCCGGCTGTCCCAGCCCGAGGGT
TTGGTAGAGGCGGGGGCGTTCACGGCCGCGGTCATGGCGGCGGCGCGGGT
GCGCCGCGTGTGGGAGAGGGAGGGCGAGGAACGGAGGAAGGTTGCTGCAG
GCCCAGTGCCGACCGGAAAGCCAACTTCAACTTCCTCGGCAGGCGCCCAG
TGCCGACCGGAAAGCCAACTTCAACTTCCTCGGCAGGC
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