mRNA_S-ischiensis_contig88.20302.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig88.20302.1
Unique NamemRNA_S-ischiensis_contig88.20302.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig88.20302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig88contigS-ischiensis_contig88:189666..190176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size513
Cds size423
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817356.1492484-CDS-S-ischiensis_contig88:189665..1900881622817356.1492484-CDS-S-ischiensis_contig88:189665..190088Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 189666..190088 +
1695741052.3715158-CDS-S-ischiensis_contig88:189665..1900881695741052.3715158-CDS-S-ischiensis_contig88:189665..190088Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 189666..190088 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817356.159666-UTR-S-ischiensis_contig88:190088..1901761622817356.159666-UTR-S-ischiensis_contig88:190088..190176Schizocladia ischiensis KU_0333UTRS-ischiensis_contig88 190089..190176 +
1695741052.382125-UTR-S-ischiensis_contig88:190088..1901761695741052.382125-UTR-S-ischiensis_contig88:190088..190176Schizocladia ischiensis KU_0333UTRS-ischiensis_contig88 190089..190176 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig88.20302.1prot_S-ischiensis_contig88.20302.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig88 189666..190088 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig88.20302.1

>prot_S-ischiensis_contig88.20302.1 ID=prot_S-ischiensis_contig88.20302.1|Name=mRNA_S-ischiensis_contig88.20302.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=141bp
VCPVSALGGGAWSGEDLSCGLGRACVAVFLLCSVRGVPLSLYSYVGSLGV
PSDDKLDVIVGEILPRHSNFKDNFSRRILAGSCRKARKISLRTWGTFSDS
FRDNSGPSRLEIFPRKLSHGGKISPTITVRGTYSTVPGRT*
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mRNA from alignment at S-ischiensis_contig88:189666..190176+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig88.20302.1 ID=mRNA_S-ischiensis_contig88.20302.1|Name=mRNA_S-ischiensis_contig88.20302.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=511bp|location=Sequence derived from alignment at S-ischiensis_contig88:189666..190176+ (Schizocladia ischiensis KU_0333)
GTGTGTCCGGTGAGCGCGCTGGGAGGGGGGGCTTGGAGTGGAGAGGATTT
GTCGTGCGGTCTTGGTCGTGCGTGCGTTGCTGTGTTTTTGCTCTGTTCGG
TGCGGGGTGTGCCCTTGTCCCTGTATAGTTATGTCGGAAGTTTGGGTGTA
CCCTCAGACGATAAGCTTGATGTAATCGTCGGAGAGATCTTGCCCCGCCA
TTCCAATTTCAAAGACAACTTTTCTCGCCGAATACTGGCCGGATCGTGCA
GGAAAGCTCGGAAAATCTCCCTCAGGACCTGGGGGACCTTTTCTGACAGT
TTTCGGGACAATTCAGGACCTTCCCGGCTAGAAATATTCCCCCGAAAATT
GTCCCATGGGGGCAAAATCTCTCCGACGATTACGGTGCGTGGTACATACA
GTACTGTGCCCGGGCGCACATAGAGTGAGCGCACATACCGTATTAGTTAA
CGCAGCTGCCCCGCCCTTGCCCCAACACCCGTGCACAACGACGATGACGA
CGATGACGACC
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Coding sequence (CDS) from alignment at S-ischiensis_contig88:189666..190176+

>mRNA_S-ischiensis_contig88.20302.1 ID=mRNA_S-ischiensis_contig88.20302.1|Name=mRNA_S-ischiensis_contig88.20302.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=846bp|location=Sequence derived from alignment at S-ischiensis_contig88:189666..190176+ (Schizocladia ischiensis KU_0333)
GTGTGTCCGGTGAGCGCGCTGGGAGGGGGGGCTTGGAGTGGAGAGGATTT
GTCGTGCGGTCTTGGTCGTGCGTGCGTTGCTGTGTTTTTGCTCTGTTCGG
TGCGGGGTGTGCCCTTGTCCCTGTATAGTTATGTCGGAAGTTTGGGTGTA
CCCTCAGACGATAAGCTTGATGTAATCGTCGGAGAGATCTTGCCCCGCCA
TTCCAATTTCAAAGACAACTTTTCTCGCCGAATACTGGCCGGATCGTGCA
GGAAAGCTCGGAAAATCTCCCTCAGGACCTGGGGGACCTTTTCTGACAGT
TTTCGGGACAATTCAGGACCTTCCCGGCTAGAAATATTCCCCCGAAAATT
GTCCCATGGGGGCAAAATCTCTCCGACGATTACGGTGCGTGGTACATACA
GTACTGTGCCCGGGCGCACATAGGTGTGTCCGGTGAGCGCGCTGGGAGGG
GGGGCTTGGAGTGGAGAGGATTTGTCGTGCGGTCTTGGTCGTGCGTGCGT
TGCTGTGTTTTTGCTCTGTTCGGTGCGGGGTGTGCCCTTGTCCCTGTATA
GTTATGTCGGAAGTTTGGGTGTACCCTCAGACGATAAGCTTGATGTAATC
GTCGGAGAGATCTTGCCCCGCCATTCCAATTTCAAAGACAACTTTTCTCG
CCGAATACTGGCCGGATCGTGCAGGAAAGCTCGGAAAATCTCCCTCAGGA
CCTGGGGGACCTTTTCTGACAGTTTTCGGGACAATTCAGGACCTTCCCGG
CTAGAAATATTCCCCCGAAAATTGTCCCATGGGGGCAAAATCTCTCCGAC
GATTACGGTGCGTGGTACATACAGTACTGTGCCCGGGCGCACATAG
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