mRNA_S-ischiensis_contig88.20297.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig88.20297.1
Unique NamemRNA_S-ischiensis_contig88.20297.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig88.20297.1 vs. uniprot
Match: A0A6H5KUD6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KUD6_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 4.740e-30
Identity = 67/108 (62.04%), Postives = 83/108 (76.85%), Query Frame = 1 
Query:  172 ATATVETPEAAKSILISAAKERNQDPETVVEAIRLLEKESRKKKEAPEG--AGTPKFDLLTTNGNWRLVLTTGDIKTAKALGVKVNYVPIKAVQVFNADYTITNGVRL 489
            A A +ET E A+++++ AA+ R+ DP+TV+EAIRL+EK    KK   EG  +  PKFDLLT NGNWRL+ TTGD+KT K LG K++YVPIKAVQVFN DYTITNGV L
Sbjct:   85 AAAALETIEDAQTVIVRAAETRDVDPDTVIEAIRLIEKSGGSKKPL-EGRDSSQPKFDLLTDNGNWRLIFTTGDVKTQKKLGGKISYVPIKAVQVFNPDYTITNGVYL 191
[Close]
BLAST of mRNA_S-ischiensis_contig88.20297.1 vs. uniprot
Match: A0A4D9D7L7_9STRA (DUF1995 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7L7_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.000e-11
Identity = 49/102 (48.04%), Postives = 61/102 (59.80%), Query Frame = 1 
Query:  151 VSRVSMQATATVETPEAAKSILISAAKERNQDPETVVEAIRLLEKESRKKKEAPEGAGTPKFDLLTT-NGNWRLVLTTGDIKTAKALGVKVNYVPIKAVQVF 453
            V +VS ++   VET EAAK +L+ AA+ R  DPE V  AI  LEK SRK K+ PE       +L     G WRL+ TTG   T  A+G K+NY P+KAVQ F
Sbjct:  342 VRKVSGESPPPVETVEAAKDVLVEAARTRGVDPERVARAIGFLEKGSRKGKKGPEEKAAAAEELRRQIQGRWRLIFTTGTKGTQAAVG-KINYFPVKAVQSF 442
[Close]
BLAST of mRNA_S-ischiensis_contig88.20297.1 vs. uniprot
Match: W7TSW6_9STRA (DUF1995 domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSW6_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 5.940e-11
Identity = 46/91 (50.55%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:  184 VETPEAAKSILISAAKERNQDPETVVEAIRLLEKESRKKKEAPEGAGTPKFDLLTT-NGNWRLVLTTGDIKTAKALGVKVNYVPIKAVQVF 453
            VET EAAK +L+ AA+ R  DPE V  AI  LEK SRK K+ PE       +L     G WRL+ TTG   T  A+G K+NY P+KAVQ F
Sbjct:  364 VETVEAAKDVLVEAARTRGVDPERVARAIGFLEKGSRKGKKGPEEKTAAAEELRRQIQGRWRLIFTTGTKGTQAAVG-KINYFPVKAVQSF 453
[Close]
BLAST of mRNA_S-ischiensis_contig88.20297.1 vs. uniprot
Match: A0A448ZK81_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZK81_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.640e-10
Identity = 43/104 (41.35%), Postives = 62/104 (59.62%), Query Frame = 1 
Query:  196 EAAKSILISAAKERNQDPETVVEAIRLLEKESRKKKEAPEGAGTPKFDLLTTNG-NWRLVLTTGDIKTAKALG-VKVNYVPIKAVQVFNA----DYTITNGVRL 489
            EA K IL  AA+ + +DP+TVV+A+  LEK SRK  +A           L+  G NWRL+ TTG + T + LG  K+NY P+KA Q F++    ++ I NG+ +
Sbjct:   55 EAXKQILYRAAETKQEDPDTVVDALLDLEKLSRKANKADPSQSENTLKALSEGGVNWRLIFTTGTVDTQRKLGGTKINYFPLKATQSFDSTTQEEWVIQNGIAV 158
[Close]
BLAST of mRNA_S-ischiensis_contig88.20297.1 vs. uniprot
Match: A0A7S4AWT0_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AWT0_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 3.660e-10
Identity = 51/160 (31.87%), Postives = 83/160 (51.88%), Query Frame = 1 
Query:  196 EAAKSILISAAKERNQDPETVVEAIRLLEKESRKKKEAPEGAGTPKFDLLTTNG-NWRLVLTTGDIKTAKALG-VKVNYVPIKAVQVFNA----DYTITNGV--------RLTGMFQYCCADTF*KYSTYFEVFARYLFHG*IVPALGRCSTRTTPSQTG 633
            EAAK IL  AA+ + +D +TVV+A+  LEK SRK  +          + L+  G +WRL+ TTG + T + LG  K+NY PIKA Q F++    ++ I NG+        +  G F +  ++        F+  + +LF+G    AL +    +  +++G
Sbjct:   71 EAAKQILYRAAETKQEDADTVVDALLDLEKLSRKANKVDPSQSEKTLNALSEGGVDWRLIFTTGTVDTQRKLGGTKINYFPIKATQSFDSTTQDEWLIQNGIGVGDLELIKFQGDFDWNLSEKSGLTKLTFDFTSIHLFNGFFDIALKKGEAASLGAKSG 230
[Close]
BLAST of mRNA_S-ischiensis_contig88.20297.1 vs. uniprot
Match: A0A7S2TG87_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TG87_9EUKA)

HSP 1 Score: 66.6 bits (161), Expect = 3.600e-9
Identity = 49/118 (41.53%), Postives = 65/118 (55.08%), Query Frame = 1 
Query:  187 ETPEAAKSILISAAKERNQDPETVVEAIRLLEKESRKKKEAPEGAGTPKFDLLTTNGNWRLVLTTGDIKTAKALGVKVNYVPIKAVQVFNAD---YTITNGV--------RLTGMFQY 507
            E  +AA   L  AA +R+ DP +V+EAI  LEK     K A + A      +   +G+WRLV TTGD+KT K +G   +YVPIKAVQ F+     Y I NGV        R  G+F++
Sbjct:   49 EKEKAAVETLRRAAAKRDIDPSSVLEAIYYLEKS----KPAAQRA----IPVSKLSGSWRLVFTTGDVKTQKKMGGTFDYVPIKAVQTFDDSSEPYRIENGVYWGDNPVVRFRGVFRW 158
[Close]
BLAST of mRNA_S-ischiensis_contig88.20297.1 vs. uniprot
Match: A0A7S2JZY1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JZY1_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 4.030e-7
Identity = 43/98 (43.88%), Postives = 57/98 (58.16%), Query Frame = 1 
Query:  202 AKSILISAAKERNQDPETVVEAIRLLEKESRKKKEAPEGAGTPKFDLLTTNGNWRLVLTTGDIKTAKALG-VKVNYVPIKAVQVFN--AD-YTITNGV 483
            A  +L  AA+ +N+DP++VV+A+  LE   RKK  A + A      L    G WRL+ TTG   + K LG  K+NY PIKAVQ F+  AD   I NG+
Sbjct:   18 ALEVLYKAAETKNEDPDSVVDALESLENLMRKKCLAEDDAAANV--LANLEGEWRLIFTTGTQDSQKKLGGKKINYFPIKAVQEFDPTADPMQIRNGI 113
[Close]
BLAST of mRNA_S-ischiensis_contig88.20297.1 vs. uniprot
Match: B8BT43_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BT43_THAPS)

HSP 1 Score: 58.9 bits (141), Expect = 1.980e-6
Identity = 38/103 (36.89%), Postives = 68/103 (66.02%), Query Frame = 1 
Query:  163 SMQATATVETPEAAKSILISAAKERNQDPETVVEAIRLLEKESRKKKEAPEGAGTPKFDLLTT-NGNWRLVLTTGDIKTAKALGVKVNYVPIKAVQVFNADYT 468
            S  A+++ E  EAA+ +L  AA+ + ++P+ V++A+ LLEK+++++ +A   A +   D+L   +G+WRL+ TTG  +  +  G +VNY P+KA+Q F+A  T
Sbjct:   45 STAASSSTEIQEAAQ-LLYRAAETKLENPDRVLDALELLEKDAKQQFKANPAAFSQ--DILNNISGDWRLIFTTGTKERQQKSGGRVNYFPLKAIQKFDATVT 144
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig88.20297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KUD6_9PHAE4.740e-3062.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9D7L7_9STRA1.000e-1148.04DUF1995 domain-containing protein n=1 Tax=Nannochl... [more]
W7TSW6_9STRA5.940e-1150.55DUF1995 domain-containing protein n=1 Tax=Nannochl... [more]
A0A448ZK81_9STRA1.640e-1041.35Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S4AWT0_9STRA3.660e-1031.88Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S2TG87_9EUKA3.600e-941.53Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S2JZY1_9STRA4.030e-743.88Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
B8BT43_THAPS1.980e-636.89Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig88contigS-ischiensis_contig88:121482..125495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.6
Seed ortholog evalue2.3e-26
Seed eggNOG ortholog2880.D7FN82
EggNOG OGs28KDC@1,2QSU6@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-15_003310.1
Exons4
Model size955
Cds size507
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig88.20297.1prot_S-ischiensis_contig88.20297.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig88 121909..125474 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817356.7212887-UTR-S-ischiensis_contig88:121481..1219081622817356.7212887-UTR-S-ischiensis_contig88:121481..121908Schizocladia ischiensis KU_0333UTRS-ischiensis_contig88 121482..121908 -
1695741052.8417861-UTR-S-ischiensis_contig88:121481..1219081695741052.8417861-UTR-S-ischiensis_contig88:121481..121908Schizocladia ischiensis KU_0333UTRS-ischiensis_contig88 121482..121908 -
1622817356.7859159-UTR-S-ischiensis_contig88:125474..1254951622817356.7859159-UTR-S-ischiensis_contig88:125474..125495Schizocladia ischiensis KU_0333UTRS-ischiensis_contig88 125475..125495 -
1695741052.9115298-UTR-S-ischiensis_contig88:125474..1254951695741052.9115298-UTR-S-ischiensis_contig88:125474..125495Schizocladia ischiensis KU_0333UTRS-ischiensis_contig88 125475..125495 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817356.7321775-CDS-S-ischiensis_contig88:121908..1219891622817356.7321775-CDS-S-ischiensis_contig88:121908..121989Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 121909..121989 -
1695741052.856831-CDS-S-ischiensis_contig88:121908..1219891695741052.856831-CDS-S-ischiensis_contig88:121908..121989Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 121909..121989 -
1622817356.7426655-CDS-S-ischiensis_contig88:122522..1226971622817356.7426655-CDS-S-ischiensis_contig88:122522..122697Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 122523..122697 -
1695741052.8662496-CDS-S-ischiensis_contig88:122522..1226971695741052.8662496-CDS-S-ischiensis_contig88:122522..122697Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 122523..122697 -
1622817356.7578173-CDS-S-ischiensis_contig88:125040..1251721622817356.7578173-CDS-S-ischiensis_contig88:125040..125172Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 125041..125172 -
1695741052.8833485-CDS-S-ischiensis_contig88:125040..1251721695741052.8833485-CDS-S-ischiensis_contig88:125040..125172Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 125041..125172 -
1622817356.771484-CDS-S-ischiensis_contig88:125355..1254741622817356.771484-CDS-S-ischiensis_contig88:125355..125474Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 125356..125474 -
1695741052.90016-CDS-S-ischiensis_contig88:125355..1254741695741052.90016-CDS-S-ischiensis_contig88:125355..125474Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 125356..125474 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig88.20297.1

>prot_S-ischiensis_contig88.20297.1 ID=prot_S-ischiensis_contig88.20297.1|Name=mRNA_S-ischiensis_contig88.20297.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=169bp
MVACGRWALFLAVLEMGCGALAFFAAPTATSTLTARAGTCRARVSRVSMQ
ATATVETPEAAKSILISAAKERNQDPETVVEAIRLLEKESRKKKEAPEGA
GTPKFDLLTTNGNWRLVLTTGDIKTAKALGVKVNYVPIKAVQVFNADYTI
TNGVRLTGMFQYCCADTF*
back to top

mRNA from alignment at S-ischiensis_contig88:121482..125495-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig88.20297.1 ID=mRNA_S-ischiensis_contig88.20297.1|Name=mRNA_S-ischiensis_contig88.20297.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4014bp|location=Sequence derived from alignment at S-ischiensis_contig88:121482..125495- (Schizocladia ischiensis KU_0333)
GGGAGCACCATCCTGGTCGCGATGGTCGCGTGCGGGCGATGGGCTCTATT
TCTTGCCGTCCTGGAAATGGGGTGCGGTGCGCTGGCCTTTTTCGCGGCCC
CGACTGCTACGTCGACGTTAACCGCCCGCGCCGGAACATGGTAGGTTGCG
GTCTCTAAATTGCACGTGCTGTGCCCGTGACCGGATGCGCCCAGTGCTTT
GTGCTGTGGGGTTTGGGCTGACCAGAATTGCCTTTGCCCAAGTCCAGCAC
CTCATCTCCCTACTTGCGGCGGCCTATTTCTCTGTCTCTTCTTCTTTGCA
CGACGGTGGGTGGTGCCCAACAGCCGCGCGCGAGTGAGCCGCGTTAGCAT
GCAGGCGACTGCGACTGTGGAGACGCCAGAGGCGGCCAAGTCCATATTGA
TCAGTGCGGCGAAGGAGCGTAACCAAGATCCCGAAACGGTGGTGGAGGCA
ATAAGGTCAGTGGTGATGATGTGGGGCGTTCGGTGGTGGTAAGTACTGCG
AAGTACTAGTACAAGCGAGCAACAACGCCTGTGGTGTTTCGAACATCATC
ATGAGCATTGACGTCAGCGGCACTGGCTGCACGGTGTGTGGTACAACAGC
GTAGAAGCAGTGCTTCGAGTGTGGTACAACAGCGTAGAAGCAGTGCTTCG
ATGCGGCACGTGCGGGGCACACGCCCAGTTCTTTGAAACACTCATCATCA
CCCGCATCTTCCATCCTGCGCCGATATTGAGTGTGCTGTGCCGGGGCCAG
CCCGACAAGTTAACGCACTTGCTGCCCTCTGCCAGGAGGGGCCACGGGCC
AGCCACTTGGAGCAGCCAATACACCTTGCGTTGTGCTTGCGGCATCCCAG
AGGCCATGGACCACCGGTGTCGTAATTCAGGAGGGTAGCGCTAGACCGCT
AGACTACACTGCGCAGGGTGGTATAGTGGTCTAGCGCTCCCCTCCTGAAT
TGCGACAACCGGCCCTCTTCCTAGCCCAGCTCAACTCGCTTTGAGGGCGA
ATAATCACTTGAATCTTTCTTTGATGGCGACCGGACACTACAATACAGCA
GTGTGCTACAATGTGACCTCAGACTGCAGTATCAACAGGAACAACACAGG
GTGAGGTGCAGGCCACGTCACTAGAGACCTCGACAGTGGCCCTTCCTTAG
CTAGGCAGGGGAGGGTTCTGTGGGAAAGGGGAGAAAGGGGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAACGTTACTTGGACAAGCCTTCA
CGTCACGTTGCCTGCCTAGTGTCGCGTCATCCTCTACTCCAAGGGTCAAA
TAAGGCACCCAATCGCATAGACCGTTGGACAACGCTGGCCGCTGCAGACA
GTCACGGTTCTAAGTATCAGCACCGCCTAACCTTTTTGTGGCGGCCAGGC
TCCTCGAGAAAGAGAGCCGGAAGAAGAAAGCATTAGACAAGATATCACAT
CGCATTGCCCGCCTAGTGTCCCGTCGTCCTGTACTCTACGGTCAAATAAG
GCACCCAAACGAATAGTCCGTTGGACAACGCTGGCCGCTGCGGACAGTCA
CGGATCTAAGTAGCAGCACCGCCCAACCTTTTTGTGGCGGCCACAGGCTC
CTCGAGAAAGAGAGTCGGACGAAGAAAGCACTAGACAAGACATCACATCA
CATTTCCTGCCTAGTGTCCCGTCATCCTCAAGCGTAAAATAGGGCACCCA
AGTACAGTGTACTTCATACATAGATCGTTGGCCATCGTTGGCCGCGGACA
TTTACGCTTAGCAACATACGAAGTAGATCGTTGGACATCGTTGGCCGCTG
CAGACAATCACGGTGCCAAGTACCACCGCCTGAAACCTTTTTGTGGCGGC
CATTGGCAGGCTCCTCGAGAAAGAGAGCCGGAAGAAGAAAGAAAATCATG
GTGCTACCGTATGTAGCACCGCCTAAAACCTTTTTGTGGCGGCCATTGGC
CGGCTTCTCGAGAAAGAGAGCCGGAAAAAAGGAACGAAAATCACGGTGCT
ACGTAGCACCGCCGAACCTTTCTGTGGCGGCTTCAGGCTCCTCGAGAAAG
AGAGCCGGACTAAGAAAGAGGCGCCCCCTGCGACAGCGGAGGGCTCAGCT
GGCACCACCCCTAACTCCGACAAGTTCGACCTGCTGACGACCAACGGGGT
CTAAAGGTCAAAAAGGCACCCACGCACATATAGACCGTCTTTTAGCCCTG
CGAGGGGCAGAAGGGCTTCGTTGAGTCCCGTTTCGGGACGAGCCTTTTGG
CACGGGGCCTGGAACTCGCCGCTTATCTACCACTCAAAATAGACCGTCCG
ACATCGTTGGCCGGGCACAGACAATCACGGTGCTAAGTAGTAGCACCGCC
CAACGTTGTCGTGGCGGCCACTGGCAGGCTCCTCGAGAAAGAGAGCCGGA
AGAAGAAAGAAAATCACGGTGCGAAGTAGCACCGCCGAACCTTTTTGTGG
CGGCTACTGGCAGGCTCCTCGAGAAAGAGAGCCGGAACAAGAAAGAGTTG
CTTGTAGACAAGACATCACATCACATTGCCTGCCTGCAGTCGTGTCCCGT
CGTCCTCCAAGGGTCAAAGAAGGCACCCAAGCACATGTATCGTTGAACGT
GATTCATATAGTTTGCAACAAGGTACAATCGCACGTGTGGGAGATTGAGT
TTTCTCGTATTAGTGTCATACTTCAAGTATATCGTTGGACTTGTATCGTA
CTACTAGGTGGGCCGTACATTACACTCATGGCACGCTTGATCCGGTACCA
GTACTTGCTCAAGCAAATAGCACCGCCCAACCTTTTCGTGGCGGCCAGGC
TCCTGGAGAAAGAGAGCCGGAAAAAGAAAGAGGCGCCCGAGGGCGCCGGC
ACCCCTAAGTTCGACCTGCTGACGACCAACGGGAACTGGAGGCTGGTGCT
GACCACAGGGGACATCAAGACGGCCAAGGCGCTGGGGGTGAAGGTCAACT
ACGTGCCCATCAAGGCCGTGCAGGTGCTGACAGGGTTGGCGCTTAGTTAG
AGCTAACTACGGGAAATAAGACGTAGAATGGAGGCTAATTAGGCCCTAAT
TAACCCCTAAGTGCCCGTCAAGACCGCCAAGGAGCTGGGGCTCAAGCTCA
ACTATGTTCCCATCAAGGCCGTGCAGGTGCTGACATGGTTGGCACTTACG
AGTATCCCCTAGGTGGTGCCCTTTTGCAAGTAGGCCCTCAATTAGTGTTA
ATTGCGGGTATTGCTAGTAGACCTTACCTGAAGGCTAATTAAGCCCTACA
GTTGCTACCCTCTAAGTGCCCATCAAGGACGTGCAGGCACAGTAGGCGGT
TGCGATGCACAGCGGTTTGTTTTCGCATGACATGCGCTCTGGACAAAGCG
TGCATTTGTGTGTGTGTGTGTGTGTGTGTGTCTGCTGCCCCCTCCCCCCT
GGCAGCTCGCCCTTTTCACCTGCGTCCCTTCCTCAGCTTATTCTGGCCAC
CCTCCCTTCTTCCCTCCCCTCCCCTCCCCTCCGCTCCCTGTTCCCGCTGC
TGGCAGGTGTTCAACGCGGACTACACCATCACAAACGGGGTGAGACTGAC
TGGTATGTTTCAGTACTGCTGTGCTGATACTTTCTAGAAGTACAGTACAT
ACTTTGAGGTATTTGCGCGCTATCTCTTCCATGGCTAAATAGTTCCCGCT
CTTGGCAGGTGTTCAACCCGGACTACACCATCACAAACGGGGTGAGACTG
ACTGGTACTGGACATCATACTATCGTACGTGTACATACTTTGAGCTATTT
ACTATACCATCACAAACGGGGTGAGACTCTTATAGTACTGCTGTGCTGAT
ACTTGTACATACTCGAGCACTACATATATATACTACGTAGTACTTCGAGG
TACTCGAGAGAGTATCCATACGTAGTATAGGCCTGACTACACAATCACGA
ACGGGGCGAGACTGACTGGTGCTGCTACAGTGCTGATACTTGTACTCGAG
TGTGTACTTTGAGGTATTTGCGCGCGATCGCTTCCATGGCTAAATATTTC
CCGCTGTTGGCAGG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig88:121482..125495-

>mRNA_S-ischiensis_contig88.20297.1 ID=mRNA_S-ischiensis_contig88.20297.1|Name=mRNA_S-ischiensis_contig88.20297.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1014bp|location=Sequence derived from alignment at S-ischiensis_contig88:121482..125495- (Schizocladia ischiensis KU_0333)
ATGGTCGCGTGCGGGCGATGGGCTCTATTTCTTGCCGTCCTGGAAATGGG
GTGCGGTGCGCTGGCCTTTTTCGCGGCCCCGACTGCTACGTCGACGTTAA
CCGCCCGCGCCGGAACATGATGGTCGCGTGCGGGCGATGGGCTCTATTTC
TTGCCGTCCTGGAAATGGGGTGCGGTGCGCTGGCCTTTTTCGCGGCCCCG
ACTGCTACGTCGACGTTAACCGCCCGCGCCGGAACATGCCGCGCGCGAGT
GAGCCGCGTTAGCATGCAGGCGACTGCGACTGTGGAGACGCCAGAGGCGG
CCAAGTCCATATTGATCAGTGCGGCGAAGGAGCGTAACCAAGATCCCGAA
ACGGTGGTGGAGGCAATAAGCCGCGCGCGAGTGAGCCGCGTTAGCATGCA
GGCGACTGCGACTGTGGAGACGCCAGAGGCGGCCAAGTCCATATTGATCA
GTGCGGCGAAGGAGCGTAACCAAGATCCCGAAACGGTGGTGGAGGCAATA
AGGCTCCTGGAGAAAGAGAGCCGGAAAAAGAAAGAGGCGCCCGAGGGCGC
CGGCACCCCTAAGTTCGACCTGCTGACGACCAACGGGAACTGGAGGCTGG
TGCTGACCACAGGGGACATCAAGACGGCCAAGGCGCTGGGGGTGAAGGTC
AACTACGTGCCCATCAAGGCCGTGCAGGCTCCTGGAGAAAGAGAGCCGGA
AAAAGAAAGAGGCGCCCGAGGGCGCCGGCACCCCTAAGTTCGACCTGCTG
ACGACCAACGGGAACTGGAGGCTGGTGCTGACCACAGGGGACATCAAGAC
GGCCAAGGCGCTGGGGGTGAAGGTCAACTACGTGCCCATCAAGGCCGTGC
AGGTGTTCAACGCGGACTACACCATCACAAACGGGGTGAGACTGACTGGT
ATGTTTCAGTACTGCTGTGCTGATACTTTCTAGGTGTTCAACGCGGACTA
CACCATCACAAACGGGGTGAGACTGACTGGTATGTTTCAGTACTGCTGTG
CTGATACTTTCTAG
back to top