mRNA_S-ischiensis_contig88.20296.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig88.20296.1
Unique NamemRNA_S-ischiensis_contig88.20296.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig88.20296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig88contigS-ischiensis_contig88:113643..114682 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size298
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig88.20296.1prot_S-ischiensis_contig88.20296.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig88 113673..114682 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817355.202083-UTR-S-ischiensis_contig88:113642..1136721622817355.202083-UTR-S-ischiensis_contig88:113642..113672Schizocladia ischiensis KU_0333UTRS-ischiensis_contig88 113643..113672 +
1695741051.625348-UTR-S-ischiensis_contig88:113642..1136721695741051.625348-UTR-S-ischiensis_contig88:113642..113672Schizocladia ischiensis KU_0333UTRS-ischiensis_contig88 113643..113672 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817355.2137454-CDS-S-ischiensis_contig88:113672..1136831622817355.2137454-CDS-S-ischiensis_contig88:113672..113683Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 113673..113683 +
1695741051.635069-CDS-S-ischiensis_contig88:113672..1136831695741051.635069-CDS-S-ischiensis_contig88:113672..113683Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 113673..113683 +
1622817355.2264726-CDS-S-ischiensis_contig88:114426..1146821622817355.2264726-CDS-S-ischiensis_contig88:114426..114682Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 114427..114682 +
1695741051.6442194-CDS-S-ischiensis_contig88:114426..1146821695741051.6442194-CDS-S-ischiensis_contig88:114426..114682Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 114427..114682 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig88.20296.1

>prot_S-ischiensis_contig88.20296.1 ID=prot_S-ischiensis_contig88.20296.1|Name=mRNA_S-ischiensis_contig88.20296.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=89bp
MFILLTAAEALAVTAAAGSNPAHPNFSGPGGPGGPGGPGGPGRPADTAPW
EARAPAWGAAKQSATVVAATAAAEEGGADLAAASGAEGG
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mRNA from alignment at S-ischiensis_contig88:113643..114682+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig88.20296.1 ID=mRNA_S-ischiensis_contig88.20296.1|Name=mRNA_S-ischiensis_contig88.20296.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1040bp|location=Sequence derived from alignment at S-ischiensis_contig88:113643..114682+ (Schizocladia ischiensis KU_0333)
GAGGGGGGCGTGACGGAGCAGACCAAGGAGATGTTCATCTTGTGAGTGCG
GGTGTGGGCTCGTGTTGTTTTTTTTAGAGAAGATAGACAAGCGAGTGGGA
AAGAAGATTTGTCCTTACATACGCGAGTGCGGTGCCCACCCCTGGCAGCC
CTTCCTTTCACTCGTTGGTTGTTTGTGTGGGGGGGGAGGGTGGTGGTGGT
GTATGTGTGTGTGTGTGTGTGTGTTGTGTGTGTGCGCGCGCGTGTATGCG
TGTGTGCGCACGCGCATGTCTGTGTGTGTTTGTGTGTGTGTGTGTGTTGA
TGCGTGCGTGCGTGCGTGCGTGCGCGTGTGCATGTGTGTGTGTGTTTGTG
TGTACACGTCCAGTGCACCAGTACATCTCAACTGCACTCACGTTGTGGTC
ACGATGTGGCCTATACGCCACAGACCGATCCCGCTCCCGTGAAACGAAAG
AACGTCTCCCGCCCCCCGTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCTCCCTCTCCCTCTCTTC
CCCTCCCCCCCCCCCCCTCTCTCTCCCTCCCTCCCCCTATCTCTCTCTCT
CTCATCTCTCGCTTCTCTCCTTCTCTTCCACTCCCCAACACCCCTCTCCT
ACCCCCCCCCCCACCACCCCCCTCCACCTCCCCCCCCACCCCCATTCCTC
ACCACAACCTTCTACCCCTGCCCCCCCTCCTCAGGCTCACTGCAGCAGAG
GCTCTGGCCGTAACAGCAGCAGCGGGCAGCAACCCCGCCCATCCTAACTT
CTCCGGGCCCGGCGGGCCCGGCGGGCCCGGCGGGCCCGGCGGGCCTGGCA
GGCCCGCGGACACAGCACCATGGGAGGCCAGGGCACCGGCTTGGGGCGCA
GCAAAGCAGAGCGCGACGGTGGTGGCGGCGACGGCGGCGGCAGAGGAGGG
CGGGGCAGATCTAGCAGCAGCATCAGGGGCAGAAGGAGGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig88:113643..114682+

>mRNA_S-ischiensis_contig88.20296.1 ID=mRNA_S-ischiensis_contig88.20296.1|Name=mRNA_S-ischiensis_contig88.20296.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=534bp|location=Sequence derived from alignment at S-ischiensis_contig88:113643..114682+ (Schizocladia ischiensis KU_0333)
ATGTTCATCTTATGTTCATCTTGCTCACTGCAGCAGAGGCTCTGGCCGTA
ACAGCAGCAGCGGGCAGCAACCCCGCCCATCCTAACTTCTCCGGGCCCGG
CGGGCCCGGCGGGCCCGGCGGGCCCGGCGGGCCTGGCAGGCCCGCGGACA
CAGCACCATGGGAGGCCAGGGCACCGGCTTGGGGCGCAGCAAAGCAGAGC
GCGACGGTGGTGGCGGCGACGGCGGCGGCAGAGGAGGGCGGGGCAGATCT
AGCAGCAGCATCAGGGGCAGAAGGAGGAGCTCACTGCAGCAGAGGCTCTG
GCCGTAACAGCAGCAGCGGGCAGCAACCCCGCCCATCCTAACTTCTCCGG
GCCCGGCGGGCCCGGCGGGCCCGGCGGGCCCGGCGGGCCTGGCAGGCCCG
CGGACACAGCACCATGGGAGGCCAGGGCACCGGCTTGGGGCGCAGCAAAG
CAGAGCGCGACGGTGGTGGCGGCGACGGCGGCGGCAGAGGAGGGCGGGGC
AGATCTAGCAGCAGCATCAGGGGCAGAAGGAGGA
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