mRNA_S-ischiensis_contig88.20295.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig88.20295.1
Unique NamemRNA_S-ischiensis_contig88.20295.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig88.20295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig88contigS-ischiensis_contig88:109861..113619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size441
Cds size381
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig88.20295.1prot_S-ischiensis_contig88.20295.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig88 109861..113560 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817355.1449263-CDS-S-ischiensis_contig88:109860..1101851622817355.1449263-CDS-S-ischiensis_contig88:109860..110185Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 109861..110185 +
1695741051.5991366-CDS-S-ischiensis_contig88:109860..1101851695741051.5991366-CDS-S-ischiensis_contig88:109860..110185Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 109861..110185 +
1622817355.1560793-CDS-S-ischiensis_contig88:113504..1135601622817355.1560793-CDS-S-ischiensis_contig88:113504..113560Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 113505..113560 +
1695741051.607613-CDS-S-ischiensis_contig88:113504..1135601695741051.607613-CDS-S-ischiensis_contig88:113504..113560Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 113505..113560 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817355.1691813-UTR-S-ischiensis_contig88:113560..1136191622817355.1691813-UTR-S-ischiensis_contig88:113560..113619Schizocladia ischiensis KU_0333UTRS-ischiensis_contig88 113561..113619 +
1695741051.6161773-UTR-S-ischiensis_contig88:113560..1136191695741051.6161773-UTR-S-ischiensis_contig88:113560..113619Schizocladia ischiensis KU_0333UTRS-ischiensis_contig88 113561..113619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig88.20295.1

>prot_S-ischiensis_contig88.20295.1 ID=prot_S-ischiensis_contig88.20295.1|Name=mRNA_S-ischiensis_contig88.20295.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=127bp
LHLPLPRPPASKPTRPGWGAKGRRRRIKVACGRVGCSGRVGVVVGALLPV
VVRVQPGSLNTPRKATEDRRSGGQGYPSRGWQTPSPWKHVGKPCGGHRHI
WHALLPGGDMAGPGGEKAGRAGGSPE*
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mRNA from alignment at S-ischiensis_contig88:109861..113619+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig88.20295.1 ID=mRNA_S-ischiensis_contig88.20295.1|Name=mRNA_S-ischiensis_contig88.20295.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3759bp|location=Sequence derived from alignment at S-ischiensis_contig88:109861..113619+ (Schizocladia ischiensis KU_0333)
CTGCACTTACCATTGCCGAGACCCCCCGCGTCGAAGCCCACGAGACCAGG
GTGGGGCGCAAAGGGCAGACGCCGTCGAATCAAGGTCGCGTGTGGCCGTG
TAGGTTGCTCCGGGCGCGTCGGCGTGGTGGTTGGCGCTCTCCTCCCTGTC
GTGGTTCGTGTTCAACCCGGTAGTCTTAACACCCCGCGGAAAGCAACTGA
GGACCGCCGCTCTGGGGGGCAGGGTTACCCATCGCGGGGGTGGCAAACAC
CGTCACCGTGGAAGCATGTGGGGAAGCCTTGTGGCGGGCATCGTCATATA
TGGCACGCTCTTCTGCCTGGCGGCGGTGAGTGGGGGTTACCCCGCCGTAT
CCCCGCCCGTCGGGCCGATCCGCCCTCCCCTACACGCTGGCGCGACAGGC
CTTCAGTTTGAACCTTTGATATTAAGCATGGGTGAACGGGCTACTCTAAG
CAGCATCTTTCGAAGTCCTCCAAGATGCCGCACTCGTAGCCCCCGACCCT
GGCCCCGATATGTCCTTATCATCGCCCATGCACTCAAATTTCCCGTTTCT
CTTTACGTGCCACGGGTTTCTAGGGCCTACCCACGCCCCGCATTCTCTCC
CTGATCCGCCCGACCGCCGCCGTTCAGGTTCTGGTCAAACCCAGAAAGCA
CATCACTCGGAATAGACCATATCTTTGCCGCTTTCCCCGTTTCTCGGCGG
GCACCGGTCCGATTCGCCCAAGGCAGTTACAGAATCCCCGCTCTTGTCCT
GTTGCCTGCGGAACACCTCGTCGAGGACAACCCCGCGCTAAAACTGTTGT
GCTTCAGGGGAGGGGGGGGGGCTATGTCATCTCTGTTGGCTGTGGTGCGC
TAAGCACCGCCTACTTTCGAGTACTCGTACGTGCAGTGTGTACTCACATC
AGGCAGGGTTGTTATCACCCCACCGACCGCCGGCCCAGCATACTACTTGC
TGGACTGTGATCTGATGTGATGCAAAATTATAGTTTATTCGAGTACACAT
CACATCACATCACATCACATCACATCACATCAAGTAGCATACTACTGTAC
TTGCTGGACCGCCGTCCAGCCCCCGCAGGGTAGCCTTTCGGCCATTGGCC
TCGCGTCCCTACTTGGTCGGGATGGAGCGTACCGGGTTCTCGCCTCCTTG
CCTGGGCGTGTACGAGTACAGTAGTACAAGTACTACGGTATGTCTTTGTT
AGGCTCCGAACCGGAGCCTGTTTTTACCGGTCGTGTCCGGCTAGCTGGCC
GACCGGTTAGACCGGCCGAAGCCTGGCTGGTATTTATTGCTTTCAGATCG
TGCATGTTTCGACGTTCGATATACTTAGCAAAAAGCGTACGAGTAGCTGT
TCTCACGCAAATACTTGCCGGTGACAGAAGCGACCGAACCAAACCAAACC
GGCTCCGATACCGGCAACAATTTCGTGCGATTGAACCTCGTTACAATTTA
CTTTGAGGTATATGAATCACCGGTAACAGTTTCGCCCAGTCGGTCGTGCC
ACTTCTTCACAGCTCCAGTACAGTATTTCTACCCTTGCGACTGAACGCCG
GGGTATCTCTGCTGGTGCGGTCGCTTCTGTCTAGTATATTGGAGCCAATA
TATATACCTCGTAAAACAAGTTTCGACTTAGGGCTGTCGGCATTGCACGC
AAGGTTATGTCACAAGACAAGCCAATGAGTCAAATACATATATATATAAA
TATATAGTTCCGAGTACTACGAGTACATGACACTCCGTATAGGATACACG
TACTTCCCCTGTTCGGAAAGTATTGTCGCAACGGTTGTAGCACAAGATTG
ATGCTGCTGATCGCGAAACGGCCCGCGGATTTGGAGAGCTCAGGAGTTAT
ATATATATATATATATATATATATAAACTCACGTGGTGCTTGGGTCGTAG
TCCCGAGACCGTTGACCACGCGCCTCGGTCGAGACGGAGCAGGCAGTTTA
CGGATTGATATCGCCTGTCTATGAGCCCTGAATGGGAAATCGGGAGGTCA
CCAAAACTGCCAATGTGGCCACGCCTGGAGGTATTTGGAAGTACCAAAAC
AAAGAAGCCCGATATCTCGAGCTAGTATACAGGTCGCCGATGCCGATTCT
CATTGTTGCAATGGATTCTTCCTAAAAAAGGGCTCGTACAATATCCTACA
AACAGGAACAACACGGGGCGAGGTGCGCGCCATGTCACTAAAGACCTCAG
CGTTGGCCCTTCCTTTTACCTCGCCAGGGGAAATTTGTGTACAGTTTGGG
TTGAGTAACAGTGGTTTCCGCCATCCCTGGATGAGTTGCAGGCCCTTGAA
GCCAAAATGGGCAAACCCACTCCCATTCTACGGGGGATTTCCAGACCTGG
GCCCCGAGAATCGGCTGAATATTCGGGTATTTGGACATAGTGAACCGACA
TCGTCGGCCGCGGCCGGGGCCCTGTGTAAAACTAGTTTGTGCCATCGGTC
TTAAACACCGTAGTTTGCAGCCAGTCCGACGTTGAAACAATTTTCAGCGT
ATACTTCCCGTAGCTTCTGGAGGGGGGGTGGCCACCCCCTCCCACCCTGG
CTCTGCCAGGGAAGGGAGGGGTCCTGCTCCGTCTCGAACGAGGCGCGTAG
TCAATGGCCTCGGGACCACGGCAAGCACCGCGTGAGTACATATATATAGA
GAGTATACTTCCAGTAGTCCTGAGACCATTGACCGCGATCCGCGGACGAC
GGAGCAATCTCCCTGCGGTGTGTGTACTGTAGTCTGTGTGCAGTAGTGTG
CCGCCCTCGTAGTGTGACATCACATCACATCAAATTAGCTACGGCGACGA
CCGGGCGTGCGATCTGATGTGAGGTGAGGTGAGGCGTGCTCTAATTTTCC
ATTGTTTGACATCACATCACATTGGCTACAGCTGACCGGGTGTGTGATGT
GATATGGTGTGAAGTGTGCTCTAATTTGCTGTAGTTTGACATCAAATCCC
ATCTCATACCATCACATTAGCTACAGCGACGACCGCGTGTGTGATGTGAT
GTGATGTGTGTCCAATTTGCTGTATTGTGACATCACATCACATCGCATTA
GATACAGCAACGACCACGTGTGTGATGTGGTGCAATGTGATGTGAGGTGT
CTCTAATTTGCTGAAGTGCGACATCACATCATACTGCTCCGCCTCGCACG
AAGCGCGGGGTCAATGGTCTCGGGACTACGGCAAGCACCACGTGAGTACA
TACAGTATGTGCTACTAGTATGTAGTATCACATTAGCGATAGTGACGACC
GGGTGATGTGATGTAATGTGAGGTGTGCTGTAATTTGCCGTAGTTTGACA
TCACATCACGTTAGCTACAGTGACGACCAGGTGCGTGATGTGATGTGATG
TGAGGCGTGCTCTAGTTTGCCGTACTGTAGTTTGGCATCACATCGCATTG
CATCACATCACGGCCAAACAGACCACTAGTACGAGAACACTCAATTCTTA
AATGGGATAACCACTAGTACGAGAACACTCCATCTCACGCGCTTGCCATT
GTACCTCGTTGCAGTTTTGTTTGTTTTATTTTTTACAACATGCGAGTTCC
GGGCCCCGTCCCAACAACCTGAGGTGGGGACCTCACCAGAAGCCCTTCCT
TTTACCCTCGTTACGATTTATATGAATCACGACAAAAAAAACAGATATGG
CGGGCCCAGGCGGCGAGAAGGCTGGCAGAGCTGGAGGCAGCCCTGAATAG
CACCCTGGATGTCGGGGTGGGGGTAGACGCCTCCAGGAGGAGGGCCGCAC
AGAGGGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig88:109861..113619+

>mRNA_S-ischiensis_contig88.20295.1 ID=mRNA_S-ischiensis_contig88.20295.1|Name=mRNA_S-ischiensis_contig88.20295.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=762bp|location=Sequence derived from alignment at S-ischiensis_contig88:109861..113619+ (Schizocladia ischiensis KU_0333)
CTGCACTTACCATTGCCGAGACCCCCCGCGTCGAAGCCCACGAGACCAGG
GTGGGGCGCAAAGGGCAGACGCCGTCGAATCAAGGTCGCGTGTGGCCGTG
TAGGTTGCTCCGGGCGCGTCGGCGTGGTGGTTGGCGCTCTCCTCCCTGTC
GTGGTTCGTGTTCAACCCGGTAGTCTTAACACCCCGCGGAAAGCAACTGA
GGACCGCCGCTCTGGGGGGCAGGGTTACCCATCGCGGGGGTGGCAAACAC
CGTCACCGTGGAAGCATGTGGGGAAGCCTTGTGGCGGGCATCGTCATATA
TGGCACGCTCTTCTGCCTGGCGGCGCTGCACTTACCATTGCCGAGACCCC
CCGCGTCGAAGCCCACGAGACCAGGGTGGGGCGCAAAGGGCAGACGCCGT
CGAATCAAGGTCGCGTGTGGCCGTGTAGGTTGCTCCGGGCGCGTCGGCGT
GGTGGTTGGCGCTCTCCTCCCTGTCGTGGTTCGTGTTCAACCCGGTAGTC
TTAACACCCCGCGGAAAGCAACTGAGGACCGCCGCTCTGGGGGGCAGGGT
TACCCATCGCGGGGGTGGCAAACACCGTCACCGTGGAAGCATGTGGGGAA
GCCTTGTGGCGGGCATCGTCATATATGGCACGCTCTTCTGCCTGGCGGCG
ATATGGCGGGCCCAGGCGGCGAGAAGGCTGGCAGAGCTGGAGGCAGCCCT
GAATAGATATGGCGGGCCCAGGCGGCGAGAAGGCTGGCAGAGCTGGAGGC
AGCCCTGAATAG
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