mRNA_S-ischiensis_contig88.20292.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig88.20292.1
Unique NamemRNA_S-ischiensis_contig88.20292.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig88.20292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig88contigS-ischiensis_contig88:82028..83800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size365
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817354.9576292-CDS-S-ischiensis_contig88:82028..823251622817354.9576292-CDS-S-ischiensis_contig88:82028..82325Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 82029..82325 -
1695741051.4950383-CDS-S-ischiensis_contig88:82028..823251695741051.4950383-CDS-S-ischiensis_contig88:82028..82325Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 82029..82325 -
1622817354.9701707-CDS-S-ischiensis_contig88:83734..838001622817354.9701707-CDS-S-ischiensis_contig88:83734..83800Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 83735..83800 -
1695741051.5044682-CDS-S-ischiensis_contig88:83734..838001695741051.5044682-CDS-S-ischiensis_contig88:83734..83800Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 83735..83800 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig88.20292.1prot_S-ischiensis_contig88.20292.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig88 82029..83800 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig88.20292.1

>prot_S-ischiensis_contig88.20292.1 ID=prot_S-ischiensis_contig88.20292.1|Name=mRNA_S-ischiensis_contig88.20292.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=121bp
GYELGGQAVRGMSVSALKRWCKELGLPTATGKGLKAALIARIEAKLAEGN
NPPAGGAETRPTNENDGPALAATAGESGSAAADTQIPAVPEGNLPAGDET
RPPKENDGPTAAAEVEDEKEA
back to top

mRNA from alignment at S-ischiensis_contig88:82028..83800-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig88.20292.1 ID=mRNA_S-ischiensis_contig88.20292.1|Name=mRNA_S-ischiensis_contig88.20292.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1773bp|location=Sequence derived from alignment at S-ischiensis_contig88:82028..83800- (Schizocladia ischiensis KU_0333)
GGGTATGAGCTGGGCGGGCAGGCGGTTCGGGGGATGAGCGTGAGCGCGCT
CAAGCGGTGGTGCAAGGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGA
GAGAGGGCGAGCGAGAGAGAGCACTGTACAGTAGAGCCGTGAACCGACGA
ACCGGTTTTAACTCGTTGTGGATGAGCGTGAGCGCGCGGAAGTGCTGGTG
CAAGGTGAGCACTGTACTTGTAGAGCCGTGAACCGAACGAACCGGTTTTG
AACTCTTTGCCCCCGCCCCGGGGAAGGTGCAATACACGCGCTTAGTCCCT
GCTGTTACGTGTACGCCTGGGTTAATCGAGAGGGTTACAGAGAGACCCCT
CCTCCACTGTAATTCCCTCCCTTTCTCCTCATTCCTTGTTTTTCTTTATT
CTGCCCTCTATGCCCTGCGAGTGAAGGCGAGTGAAAGGAAGGGCTTCCGG
GGGTGGGGCCCTGAACTCGCATATGTAGGGACACCCCTTCTTTCCCACTC
CCTTGTTTGTCTTCTTGCACAGAAAACAGTTAGCTGACCAACCGAACCCT
CAACCCTGTCCGGTGAAAACCCGGCGTGCTACTCTGTCGCAGCATAGTAC
TAGTAGGGACGCGAGGGCAATGGCCGGAAGGCTATCTACCCTGTGCACCC
CAAGGGGGGCTGGTCGGTAGTCCAGCGCGGTGTATGCTTGTCCGACGGTC
GGTGGCATTCACAGGACGCGGGGGGATAGCAGCCCTGTCCGCAAAATGCG
AGCATGCAGTGACTGGCCGTGTGAGGCCGGCGCCGCGATGCGATGCATTG
TTTTTCTCGTTCAAGCTCCCACAACATTGTCGGCCGTTGGACACGTGCAT
GTACTGCAGTGTGTCATCGTCCGCCAAGGGCTAAGTAGCAGCCTCGGGCA
CGTCCCTCCTCCAGTGAAAACCAGTGATGGAATGTCGACTGATTTTTTGG
GTGGCACTACTGGCACTCAACTTTCCCCTGGCGAGATAAGGAAGGGCCGT
TGTTGAGGTCTCTAGTGACGTGGCCCGCACCTCACCCCGTGTTTTTCCTT
AAATACTAGCTACAGTACTTGGACTTAGTGTGGGGCAAACTATCGAACAT
CGACTATCGATAGATATATACGGGGCCTGGAACTCGCCGCTTATCTATCA
CTCAAATTAGATCGGTACTGTTGATAAATAGGTTGATTTGCCTAGCTATT
CCATCACTGGTGAACACAGGGCGTTCTGGGGTGGACTGCCCGGCCCCTAA
GTAGCGAAGTCAGGAGGCGGTGGTATGGTAGCTGGGGGGGGGGGTGGGGG
GGTTGGCGGGGTGTAACGCTTGCACCGAGCGCACCCGGCTACTTTCAGTA
TTAACAGGAACAACACGGGGCGATGTGCAGGCCATGTGACTAAGGAATAA
AGACCAGTCATCCTCCTCCCTTGAAAACCATCCGAACCCCCCCGCCACCC
CCCTGCCCCACAACATTTTTTGCAGGAGCTCGGGCTGCCCACGGCCACCG
GGAAGGGCCTCAAGGCTGCCCTCATTGCAAGGATCGAGGCCAAGCTCGCC
GAAGGCAACAACCCGCCTGCGGGGGGCGCAGAGACACGGCCGACCAACGA
GAACGACGGGCCCGCCCTCGCGGCAACAGCCGGGGAGAGCGGCTCGGCCG
CTGCAGACACGCAGATTCCGGCAGTGCCAGAAGGTAATCTTCCAGCGGGC
GACGAGACACGGCCGCCTAAGGAGAACGACGGGCCCACTGCCGCGGCAGA
GGTGGAGGACGAGAAAGAAGCGG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig88:82028..83800-

>mRNA_S-ischiensis_contig88.20292.1 ID=mRNA_S-ischiensis_contig88.20292.1|Name=mRNA_S-ischiensis_contig88.20292.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=726bp|location=Sequence derived from alignment at S-ischiensis_contig88:82028..83800- (Schizocladia ischiensis KU_0333)
GGGTATGAGCTGGGCGGGCAGGCGGTTCGGGGGATGAGCGTGAGCGCGCT
CAAGCGGTGGTGCAAGGGGTATGAGCTGGGCGGGCAGGCGGTTCGGGGGA
TGAGCGTGAGCGCGCTCAAGCGGTGGTGCAAGGAGCTCGGGCTGCCCACG
GCCACCGGGAAGGGCCTCAAGGCTGCCCTCATTGCAAGGATCGAGGCCAA
GCTCGCCGAAGGCAACAACCCGCCTGCGGGGGGCGCAGAGACACGGCCGA
CCAACGAGAACGACGGGCCCGCCCTCGCGGCAACAGCCGGGGAGAGCGGC
TCGGCCGCTGCAGACACGCAGATTCCGGCAGTGCCAGAAGGTAATCTTCC
AGCGGGCGACGAGACACGGCCGCCTAAGGAGAACGACGGGCCCACTGCCG
CGGCAGAGGTGGAGGACGAGAAAGAAGCGGAGCTCGGGCTGCCCACGGCC
ACCGGGAAGGGCCTCAAGGCTGCCCTCATTGCAAGGATCGAGGCCAAGCT
CGCCGAAGGCAACAACCCGCCTGCGGGGGGCGCAGAGACACGGCCGACCA
ACGAGAACGACGGGCCCGCCCTCGCGGCAACAGCCGGGGAGAGCGGCTCG
GCCGCTGCAGACACGCAGATTCCGGCAGTGCCAGAAGGTAATCTTCCAGC
GGGCGACGAGACACGGCCGCCTAAGGAGAACGACGGGCCCACTGCCGCGG
CAGAGGTGGAGGACGAGAAAGAAGCG
back to top