mRNA_S-ischiensis_contig87.20287.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20287.1
Unique NamemRNA_S-ischiensis_contig87.20287.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:526393..527056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size664
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20287.1prot_S-ischiensis_contig87.20287.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 526498..526941 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817350.9755557-UTR-S-ischiensis_contig87:526392..5264971622817350.9755557-UTR-S-ischiensis_contig87:526392..526497Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 526393..526497 +
1695741048.1870422-UTR-S-ischiensis_contig87:526392..5264971695741048.1870422-UTR-S-ischiensis_contig87:526392..526497Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 526393..526497 +
1622817350.9987628-UTR-S-ischiensis_contig87:526941..5270561622817350.9987628-UTR-S-ischiensis_contig87:526941..527056Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 526942..527056 +
1695741048.2049487-UTR-S-ischiensis_contig87:526941..5270561695741048.2049487-UTR-S-ischiensis_contig87:526941..527056Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 526942..527056 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817350.987184-CDS-S-ischiensis_contig87:526497..5269411622817350.987184-CDS-S-ischiensis_contig87:526497..526941Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 526498..526941 +
1695741048.1960814-CDS-S-ischiensis_contig87:526497..5269411695741048.1960814-CDS-S-ischiensis_contig87:526497..526941Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 526498..526941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20287.1

>prot_S-ischiensis_contig87.20287.1 ID=prot_S-ischiensis_contig87.20287.1|Name=mRNA_S-ischiensis_contig87.20287.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=148bp
MHRAGCVAILVFSTFRLVRGRPPSPTRRGWPWPASPTRRRGVGRGQPPRQ
GEVGRSQPAQHLTDERVLRHVGSTLWDAWSMVTGISQANLPPCTTRLHLR
STVLSTSTKYTSFEHYLYGQYRQRVHWSQDCGKRSVRTLQQATDTSK*
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mRNA from alignment at S-ischiensis_contig87:526393..527056+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20287.1 ID=mRNA_S-ischiensis_contig87.20287.1|Name=mRNA_S-ischiensis_contig87.20287.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=664bp|location=Sequence derived from alignment at S-ischiensis_contig87:526393..527056+ (Schizocladia ischiensis KU_0333)
CAGGAACCTGAGAGATTTTGATTATGTGCGCAGTCGCGCTTGTTCCACTC
GTTAACCACCCCTCTGCACCGTACCAGGTTGCATGGAGTCAAGTACCTAC
TTCAGATGCACCGGGCCGGGTGCGTCGCCATCTTGGTCTTCTCCACCTTT
CGTCTTGTGCGTGGCAGGCCCCCCTCCCCAACAAGGAGAGGTTGGCCGTG
GCCAGCCTCCCCGACAAGGAGACGGGGGGTTGGCCGTGGCCAGCCTCCCC
GACAAGGAGAAGTTGGTCGTAGTCAGCCTGCCCAACACCTAACAGACGAA
AGAGTGCTCCGTCACGTAGGTTCAACCCTGTGGGACGCGTGGTCAATGGT
CACAGGAATATCACAGGCAAACCTTCCTCCCTGTACCACGAGATTGCACC
TACGAAGTACAGTACTTAGCACGAGTACAAAATATACATCTTTCGAGCAC
TACTTGTATGGTCAATACAGGCAGCGTGTCCACTGGTCTCAGGACTGCGG
CAAGCGCAGTGTGAGAACTCTACAGCAGGCAACAGATACTTCGAAGTAAG
AAACACCGCCCTCCCACTGCATCGCCAACTCCGCCAAGCGCTGCACCCGC
CTCCCTGCCGCCCCCGCAACCCCGCGGCTCTGCTGCATGCGCTCCGCCGC
AAACCCTCGTCAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig87:526393..527056+

>mRNA_S-ischiensis_contig87.20287.1 ID=mRNA_S-ischiensis_contig87.20287.1|Name=mRNA_S-ischiensis_contig87.20287.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=888bp|location=Sequence derived from alignment at S-ischiensis_contig87:526393..527056+ (Schizocladia ischiensis KU_0333)
ATGCACCGGGCCGGGTGCGTCGCCATCTTGGTCTTCTCCACCTTTCGTCT
TGTGCGTGGCAGGCCCCCCTCCCCAACAAGGAGAGGTTGGCCGTGGCCAG
CCTCCCCGACAAGGAGACGGGGGGTTGGCCGTGGCCAGCCTCCCCGACAA
GGAGAAGTTGGTCGTAGTCAGCCTGCCCAACACCTAACAGACGAAAGAGT
GCTCCGTCACGTAGGTTCAACCCTGTGGGACGCGTGGTCAATGGTCACAG
GAATATCACAGGCAAACCTTCCTCCCTGTACCACGAGATTGCACCTACGA
AGTACAGTACTTAGCACGAGTACAAAATATACATCTTTCGAGCACTACTT
GTATGGTCAATACAGGCAGCGTGTCCACTGGTCTCAGGACTGCGGCAAGC
GCAGTGTGAGAACTCTACAGCAGGCAACAGATACTTCGAAGTAAATGCAC
CGGGCCGGGTGCGTCGCCATCTTGGTCTTCTCCACCTTTCGTCTTGTGCG
TGGCAGGCCCCCCTCCCCAACAAGGAGAGGTTGGCCGTGGCCAGCCTCCC
CGACAAGGAGACGGGGGGTTGGCCGTGGCCAGCCTCCCCGACAAGGAGAA
GTTGGTCGTAGTCAGCCTGCCCAACACCTAACAGACGAAAGAGTGCTCCG
TCACGTAGGTTCAACCCTGTGGGACGCGTGGTCAATGGTCACAGGAATAT
CACAGGCAAACCTTCCTCCCTGTACCACGAGATTGCACCTACGAAGTACA
GTACTTAGCACGAGTACAAAATATACATCTTTCGAGCACTACTTGTATGG
TCAATACAGGCAGCGTGTCCACTGGTCTCAGGACTGCGGCAAGCGCAGTG
TGAGAACTCTACAGCAGGCAACAGATACTTCGAAGTAA
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