mRNA_S-ischiensis_contig87.20286.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20286.1
Unique NamemRNA_S-ischiensis_contig87.20286.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:521262..522871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_003370.1
Hectar predicted targeting categoryother localisation
Exons3
Model size843
Cds size387
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20286.1prot_S-ischiensis_contig87.20286.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 521262..522417 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817354.8868303-CDS-S-ischiensis_contig87:521261..5213511622817354.8868303-CDS-S-ischiensis_contig87:521261..521351Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 521262..521351 +
1695741051.4485648-CDS-S-ischiensis_contig87:521261..5213511695741051.4485648-CDS-S-ischiensis_contig87:521261..521351Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 521262..521351 +
1622817354.9005504-CDS-S-ischiensis_contig87:521715..5218841622817354.9005504-CDS-S-ischiensis_contig87:521715..521884Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 521716..521884 +
1695741051.460706-CDS-S-ischiensis_contig87:521715..5218841695741051.460706-CDS-S-ischiensis_contig87:521715..521884Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 521716..521884 +
1622817354.9112365-CDS-S-ischiensis_contig87:522289..5224171622817354.9112365-CDS-S-ischiensis_contig87:522289..522417Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 522290..522417 +
1695741051.4717863-CDS-S-ischiensis_contig87:522289..5224171695741051.4717863-CDS-S-ischiensis_contig87:522289..522417Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 522290..522417 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817354.9217284-UTR-S-ischiensis_contig87:522417..5228711622817354.9217284-UTR-S-ischiensis_contig87:522417..522871Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 522418..522871 +
1695741051.4832082-UTR-S-ischiensis_contig87:522417..5228711695741051.4832082-UTR-S-ischiensis_contig87:522417..522871Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 522418..522871 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20286.1

>prot_S-ischiensis_contig87.20286.1 ID=prot_S-ischiensis_contig87.20286.1|Name=mRNA_S-ischiensis_contig87.20286.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=129bp
APVTPAPTEGVCVPTVDDQVYLDFYNKELYYDETCTDEAGLHCNAFGLGL
NCRTCWTDCEGSALFLERFPAYPAADIHFCPDTGSNGVDTVYTVECCGGV
LGGSSTDFGCPDLRFRGRRGLLRSVGKQ*
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mRNA from alignment at S-ischiensis_contig87:521262..522871+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20286.1 ID=mRNA_S-ischiensis_contig87.20286.1|Name=mRNA_S-ischiensis_contig87.20286.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1610bp|location=Sequence derived from alignment at S-ischiensis_contig87:521262..522871+ (Schizocladia ischiensis KU_0333)
GCTCCGGTCACGCCGGCCCCGACCGAGGGGGTGTGCGTGCCCACTGTGGA
CGACCAGGTGTACCTGGACTTCTACAACAAGGAGCTCTACGTGAGTGGGG
CGGGCGGGCGGGGGCGGGCGGGCGGGGGGGGGGGCGGCGTTTTTTTGTGG
CGTGCCATGGGGAGATGGGGGGTGCACGCATCCACGGGGAGTGGTGCCTG
TGTTGATACGAGTATGTGTGCGTGTTGGGGATGTGTGCGGTGTGTAGTGC
AGGGAAACCTTCAGAAAATGACCTTGACTACCCCCCTCCCTCCTCCGCCT
GCTCCTGCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCACCTCCTCCACCCCCACCACCCCTCCTGCTCC
CCCTCCTCGACCCCCCCCCTCCTCCTCCTCCACCTCCACCTCCACCGCTA
CCAGTACGACGAGACATGCACCGACGAGGCGGGCCTACACTGCAACGCCT
TTGGCCTGGGCCTGAACTGCCGCACGTGCTGGACGGACTGCGAGGGCTCG
GCGCTCTTCCTCGAGCGTTTCCCTGCCTACCCCGCCGCCGACATCCACTT
CTGCCCAGACACAGGCAGCAACGGTGCGTTTGTTCAAGCAACGTAACGCA
TGTGGTACAGTAGTGTGATAGCCATGTTGGGCGGATGAGAGGTGGGGCGG
TAACCCAGGAGTGTGGTCCCTTGCCACAACGGGCCGCGCGGAAGCGCTGT
AAAAGCCAGGAGGACTTGTAGACTATTGAGACTTTGAAAAAGGGTGAGAT
GCTAGGAAGATCCCCGCGCGCTACTGTACCATTGTGCGTGATGTTGTGCG
ATGTGCTGTGATGTCAAACCGCAGTACGCTAGAGTATACTTCGAAGTACA
TCACATCACATCAGACCACATCAATTCACATCACACGAGCGCCTCATCGT
CCACCAAGCGTCGAAAACCCTCACGAGCTCTTCCCTCACCTCTGCCCCCC
CCCTCGCCGCCCACCTCCGTCCCACCAGGCGTGGACACCGTCTACACGGT
GGAGTGCTGCGGCGGCGTCCTTGGCGGCTCCTCCACGGACTTCGGCTGCC
CTGACCTTCGCTTCCGCGGCCGCCGCGGCCTGCTGCGCAGCGTGGGCAAG
CAGTGAAGCAGCCACCGACGCAGTTATAGCAGGCACAATAGCCTACCCCA
CTTGGTCCTGGCGGCTCGGTTGCGTGGGGCCGGGTCGGACCGGGCCAATC
CCATTGGCCGAGGCGACCCAGTCCTCGCGACGGAAAGGCTGCAGCGAGCG
CTGTGACAGCCCCGCCGGACTGGGAGGGAACTGAGTGACTGACCGAGACT
CGAGGCGATGCGATGGCCCAGCCGGCCAGTGATGGGGCCCGGGGCCGGGG
GGGCCAGGGGTGGGGAGGCGGGTTGGGGGGGAGTCCAGAGGGAGCCCAAA
GATTTGCCCCTGGGTGTAGTCAGAGTCTGGGATGCCTCTTTGGACCACGT
GAACGGAGGAAGGCAGGCAGGGGACCTTCTGACTTGCCGGTTTCGAGGAG
CTGTCACCGTCTCCCGCCGGGTGCCAAGGGCGGAGGGATAGTTGTACAGC
TAGCGCACGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig87:521262..522871+

>mRNA_S-ischiensis_contig87.20286.1 ID=mRNA_S-ischiensis_contig87.20286.1|Name=mRNA_S-ischiensis_contig87.20286.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=774bp|location=Sequence derived from alignment at S-ischiensis_contig87:521262..522871+ (Schizocladia ischiensis KU_0333)
GCTCCGGTCACGCCGGCCCCGACCGAGGGGGTGTGCGTGCCCACTGTGGA
CGACCAGGTGTACCTGGACTTCTACAACAAGGAGCTCTACGCTCCGGTCA
CGCCGGCCCCGACCGAGGGGGTGTGCGTGCCCACTGTGGACGACCAGGTG
TACCTGGACTTCTACAACAAGGAGCTCTACTACGACGAGACATGCACCGA
CGAGGCGGGCCTACACTGCAACGCCTTTGGCCTGGGCCTGAACTGCCGCA
CGTGCTGGACGGACTGCGAGGGCTCGGCGCTCTTCCTCGAGCGTTTCCCT
GCCTACCCCGCCGCCGACATCCACTTCTGCCCAGACACAGGCAGCAACGT
ACGACGAGACATGCACCGACGAGGCGGGCCTACACTGCAACGCCTTTGGC
CTGGGCCTGAACTGCCGCACGTGCTGGACGGACTGCGAGGGCTCGGCGCT
CTTCCTCGAGCGTTTCCCTGCCTACCCCGCCGCCGACATCCACTTCTGCC
CAGACACAGGCAGCAACGGCGTGGACACCGTCTACACGGTGGAGTGCTGC
GGCGGCGTCCTTGGCGGCTCCTCCACGGACTTCGGCTGCCCTGACCTTCG
CTTCCGCGGCCGCCGCGGCCTGCTGCGCAGCGTGGGCAAGCAGTGAGCGT
GGACACCGTCTACACGGTGGAGTGCTGCGGCGGCGTCCTTGGCGGCTCCT
CCACGGACTTCGGCTGCCCTGACCTTCGCTTCCGCGGCCGCCGCGGCCTG
CTGCGCAGCGTGGGCAAGCAGTGA
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