mRNA_S-ischiensis_contig87.20281.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20281.1
Unique NamemRNA_S-ischiensis_contig87.20281.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:474621..476040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size389
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817350.388728-CDS-S-ischiensis_contig87:474620..4747961622817350.388728-CDS-S-ischiensis_contig87:474620..474796Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 474621..474796 +
1695741047.8699787-CDS-S-ischiensis_contig87:474620..4747961695741047.8699787-CDS-S-ischiensis_contig87:474620..474796Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 474621..474796 +
1622817350.3997347-CDS-S-ischiensis_contig87:475827..4760381622817350.3997347-CDS-S-ischiensis_contig87:475827..476038Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 475828..476038 +
1695741047.881429-CDS-S-ischiensis_contig87:475827..4760381695741047.881429-CDS-S-ischiensis_contig87:475827..476038Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 475828..476038 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20281.1prot_S-ischiensis_contig87.20281.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 474621..476038 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20281.1

>prot_S-ischiensis_contig87.20281.1 ID=prot_S-ischiensis_contig87.20281.1|Name=mRNA_S-ischiensis_contig87.20281.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=129bp
GGRGGRAEHDTRRFKDDSRGRDARAGVGGGRRGFGEPSSAPRGVDRVGGG
QRAPPKPSRFSSLPGPGPLGRGRGRAATLPAWMTGGAGGTGGGGGNAPGG
LQSSGSPHRTNGGGGRHETGALQKRDTWR
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mRNA from alignment at S-ischiensis_contig87:474621..476040+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20281.1 ID=mRNA_S-ischiensis_contig87.20281.1|Name=mRNA_S-ischiensis_contig87.20281.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1420bp|location=Sequence derived from alignment at S-ischiensis_contig87:474621..476040+ (Schizocladia ischiensis KU_0333)
GGCGGGCGGGGGGGTCGTGCAGAGCACGACACACGCCGCTTCAAGGACGA
TTCGCGGGGAAGAGACGCTCGGGCCGGTGTCGGCGGCGGTCGCAGAGGCT
TTGGCGAGCCCTCCTCTGCCCCCCGAGGGGTGGACCGGGTCGGTGGTGGG
CAGCGGGCCCCGCCAAAGCCTTCCAGGTTAGTGTTGATTTTTTTGGCGTA
GGGGGGGGTAGAGGCCGACGGAGTCGGGTATGGTGCTGCTGCAACTACTC
GGAACTTGTACATTTGTGAGTGTGGTGTGATGTGATGTGATGTGTACACA
AACATGATGTAGAGGCTCTAGTTTGTGTACCGCACCGCACCACATCACAT
CACATCACATCATACCATCGGTGCGTGGAAAGGTGCAGCGTGGGTTCGCG
TGATGGCCCGAGGGTCGAACCTGACTGTTTCAGGGACGGCGGGACATGGA
GTATTGTGATGCGATGTGATGCGATGTCAAACTCGAGCACATTGGAGTAC
TAACTAGTACATCCACATCACATCACATCACATCAAATAAACCACGTCAG
TGTCGAATCCTGACTGTTTACGGTAGAGGACGACAGTACGGTGTAGCCGT
GGGAGTTTCCGTGTGAAAATCAGTGCGCTGGTATTTGCTGTAGTTAATAG
TCCTGTGCGTCTATTGCCATTGCCTTCTGATATGGCTGTATAGCTAAGGT
GGAACACCTGACTTGTGCCTGGAGCGATCGTTTGGTTTTCACCTCATGAC
GCCACGCGAGCTACGCGGTAGTATTTTCTCAATCGAAAGGTGTGATAGAG
AGCTATCAATCCCACCCTTCACAATCGAGAGATAATATATTTTTCCAATG
ACAATTCTTTCCGAATGTCTCGGGACAATCACTCAAATCTAGGTACCTTT
GTTTCCCTCACTTTTGGCAACGGCAATCGAAAGACAACAGTCGGGCGCGT
AAACCATCCAACAACCATCGTGTAACTCGCGTGGGTCGCGAGATCAGAAG
CAAGCATGTCCTGGCGGGGCAATTACAGGCTTTGAACTGAAATAGTCAAT
GGGCGATTATATTTAGATGTACTCACGTGGTGCTCGCCGTAGTCCCGAGA
CCATTGACCACGCGCCTCGGTCGAGACGGAGCACGCGATTGCGCACAATA
TACAGCACTCGAGTGTACCTGCTACGTCGTTGTACCCGGAACAACACACG
ATCGCAGGTTCTCCTCCCTGCCCGGGCCTGGCCCCCTGGGAAGGGGGCGG
GGCCGGGCGGCCACCCTCCCAGCCTGGATGACCGGAGGCGCTGGCGGCAC
TGGCGGCGGCGGTGGCAATGCCCCCGGGGGTCTTCAGAGCTCCGGTTCGC
CCCACCGCACGAACGGCGGCGGCGGCAGGCATGAGACGGGGGCTTTGCAG
AAGAGAGACACATGGCGCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig87:474621..476040+

>mRNA_S-ischiensis_contig87.20281.1 ID=mRNA_S-ischiensis_contig87.20281.1|Name=mRNA_S-ischiensis_contig87.20281.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=774bp|location=Sequence derived from alignment at S-ischiensis_contig87:474621..476040+ (Schizocladia ischiensis KU_0333)
GGCGGGCGGGGGGGTCGTGCAGAGCACGACACACGCCGCTTCAAGGACGA
TTCGCGGGGAAGAGACGCTCGGGCCGGTGTCGGCGGCGGTCGCAGAGGCT
TTGGCGAGCCCTCCTCTGCCCCCCGAGGGGTGGACCGGGTCGGTGGTGGG
CAGCGGGCCCCGCCAAAGCCTTCCAGGGCGGGCGGGGGGGTCGTGCAGAG
CACGACACACGCCGCTTCAAGGACGATTCGCGGGGAAGAGACGCTCGGGC
CGGTGTCGGCGGCGGTCGCAGAGGCTTTGGCGAGCCCTCCTCTGCCCCCC
GAGGGGTGGACCGGGTCGGTGGTGGGCAGCGGGCCCCGCCAAAGCCTTCC
AGGTTCTCCTCCCTGCCCGGGCCTGGCCCCCTGGGAAGGGGGCGGGGCCG
GGCGGCCACCCTCCCAGCCTGGATGACCGGAGGCGCTGGCGGCACTGGCG
GCGGCGGTGGCAATGCCCCCGGGGGTCTTCAGAGCTCCGGTTCGCCCCAC
CGCACGAACGGCGGCGGCGGCAGGCATGAGACGGGGGCTTTGCAGAAGAG
AGACACATGGCGCGTTCTCCTCCCTGCCCGGGCCTGGCCCCCTGGGAAGG
GGGCGGGGCCGGGCGGCCACCCTCCCAGCCTGGATGACCGGAGGCGCTGG
CGGCACTGGCGGCGGCGGTGGCAATGCCCCCGGGGGTCTTCAGAGCTCCG
GTTCGCCCCACCGCACGAACGGCGGCGGCGGCAGGCATGAGACGGGGGCT
TTGCAGAAGAGAGACACATGGCGC
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