mRNA_S-ischiensis_contig87.20280.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20280.1
Unique NamemRNA_S-ischiensis_contig87.20280.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:473772..474353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size230
Cds size132
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20280.1prot_S-ischiensis_contig87.20280.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 473870..474353 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817350.3362627-UTR-S-ischiensis_contig87:473771..4738691622817350.3362627-UTR-S-ischiensis_contig87:473771..473869Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 473772..473869 +
1695741047.8336148-UTR-S-ischiensis_contig87:473771..4738691695741047.8336148-UTR-S-ischiensis_contig87:473771..473869Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 473772..473869 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817350.347077-CDS-S-ischiensis_contig87:473869..4738751622817350.347077-CDS-S-ischiensis_contig87:473869..473875Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 473870..473875 +
1695741047.845343-CDS-S-ischiensis_contig87:473869..4738751695741047.845343-CDS-S-ischiensis_contig87:473869..473875Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 473870..473875 +
1622817350.357435-CDS-S-ischiensis_contig87:474227..4743531622817350.357435-CDS-S-ischiensis_contig87:474227..474353Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 474228..474353 +
1695741047.8583038-CDS-S-ischiensis_contig87:474227..4743531695741047.8583038-CDS-S-ischiensis_contig87:474227..474353Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 474228..474353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20280.1

>prot_S-ischiensis_contig87.20280.1 ID=prot_S-ischiensis_contig87.20280.1|Name=mRNA_S-ischiensis_contig87.20280.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=44bp
MQAWRGRGPKPRINPQARVSTSGGAAEGTARDDGDLNGGRVTGG
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mRNA from alignment at S-ischiensis_contig87:473772..474353+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20280.1 ID=mRNA_S-ischiensis_contig87.20280.1|Name=mRNA_S-ischiensis_contig87.20280.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=582bp|location=Sequence derived from alignment at S-ischiensis_contig87:473772..474353+ (Schizocladia ischiensis KU_0333)
CCTGGATGTGCGCGCGGCGATCCTCGCACGCCCGAGGCCGGGGGAGGACA
GAGGGGGCACCGTGAAAGCAGCTGGAACAGCGCCGAGCTCACCGTCATAT
GCAGGTGCGTCACGCAGGTGGTGACGGACTGGGTCGCCGCAGCGGCTCTT
GCCCCGATGTCGACCCGAATGCTTGCTGTAGGCTCTGGCCCGTAACCTAT
CCCCACTGCACAATTGTACGCCCACATCCGTGCAGGACCATGCGCTTGAG
TTTGCACCTGAGAGGTTAATCCCTTTCAGCTGGGCCCCTGATTCGTAGGA
TACAGCAGGCCGGGAAGGTCTGATTCGCAGATCTGAGCGGAGGGCCGCCC
ATATCGTTGCGCTCCGGTAGTCTGCACCTCGCCGCCAGCATCCTGACCAC
CAGAAATTCAAGAACGTATGCCCCCCTCCCCCTCTCCTCACTTTCCCCTT
GTCCAGGCATGGCGCGGAAGGGGGCCCAAGCCCAGAATAAACCCACAGGC
GCGGGTGTCAACATCAGGAGGGGCGGCTGAAGGCACTGCCCGGGACGATG
GGGACCTCAACGGGGGCCGTGTGACGGGTGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig87:473772..474353+

>mRNA_S-ischiensis_contig87.20280.1 ID=mRNA_S-ischiensis_contig87.20280.1|Name=mRNA_S-ischiensis_contig87.20280.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=264bp|location=Sequence derived from alignment at S-ischiensis_contig87:473772..474353+ (Schizocladia ischiensis KU_0333)
ATGCAGATGCAGGCATGGCGCGGAAGGGGGCCCAAGCCCAGAATAAACCC
ACAGGCGCGGGTGTCAACATCAGGAGGGGCGGCTGAAGGCACTGCCCGGG
ACGATGGGGACCTCAACGGGGGCCGTGTGACGGGTGGGGCATGGCGCGGA
AGGGGGCCCAAGCCCAGAATAAACCCACAGGCGCGGGTGTCAACATCAGG
AGGGGCGGCTGAAGGCACTGCCCGGGACGATGGGGACCTCAACGGGGGCC
GTGTGACGGGTGGG
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