mRNA_S-ischiensis_contig87.20279.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20279.1
Unique NamemRNA_S-ischiensis_contig87.20279.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:472068..473588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size195
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20279.1prot_S-ischiensis_contig87.20279.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 472068..473439 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817350.2822742-CDS-S-ischiensis_contig87:472067..4722211622817350.2822742-CDS-S-ischiensis_contig87:472067..472221Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 472068..472221 -
1695741047.8001702-CDS-S-ischiensis_contig87:472067..4722211695741047.8001702-CDS-S-ischiensis_contig87:472067..472221Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 472068..472221 -
1622817350.2937748-CDS-S-ischiensis_contig87:473398..4734391622817350.2937748-CDS-S-ischiensis_contig87:473398..473439Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 473399..473439 -
1695741047.8127384-CDS-S-ischiensis_contig87:473398..4734391695741047.8127384-CDS-S-ischiensis_contig87:473398..473439Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 473399..473439 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817350.3060746-UTR-S-ischiensis_contig87:473439..4735881622817350.3060746-UTR-S-ischiensis_contig87:473439..473588Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 473440..473588 -
1695741047.8224285-UTR-S-ischiensis_contig87:473439..4735881695741047.8224285-UTR-S-ischiensis_contig87:473439..473588Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 473440..473588 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20279.1

>prot_S-ischiensis_contig87.20279.1 ID=prot_S-ischiensis_contig87.20279.1|Name=mRNA_S-ischiensis_contig87.20279.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=65bp
MEDAPTTHRGQTPRANGVHAFKGNGSNASQRGTAAAGGGTVGAPAGDGPP
RRRNKQPPLRGDHLR
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mRNA from alignment at S-ischiensis_contig87:472068..473588-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20279.1 ID=mRNA_S-ischiensis_contig87.20279.1|Name=mRNA_S-ischiensis_contig87.20279.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1521bp|location=Sequence derived from alignment at S-ischiensis_contig87:472068..473588- (Schizocladia ischiensis KU_0333)
CACCGGACAAAGACGAGGGCCTGTACGGTTCGCGGGGGGCCTCCTCGACG
ACGGAGGAGGGAGAGGACAAGATCAAGGGTGAATCTTTGTCTCCTGGCAT
GCAGGCACGGGATTTGACGTGACTTTTGCACGCAAGTGCAGCCGCGGCGA
TGGAAGATGCCCCGACGACCCACCGCGGACAGACACCGAGGTGAAAAACT
CGCTGACCTTCGTGGGTTGGTGCCGGCAGCGCGCCGCCAGTCCCGGAGAA
CCCCCCTAAACGTGGCTGATGACTCGGGTTTTTGTCTGTCCGCCACCTTA
TCTCTTGCATGTACTGGTTTCGAGACATTGCGTACGACAACCCACACACA
GCTGCTGGTGCACGTGTTCTACTTCGAAGTCATTCAGTAGCACCCCCCAA
CAATGCACGCAACCCTGGCGGGCTGGTGAGCCCCAAGCAATTTTGTCTTA
CATGGGAGGCGCCTGAGACGGCTAAAACATGAGACGGCCGAAAACAACAC
CCGCTGTGTGCCATGGTGGTGGCGACGGGTGGGACAGTGCATATCATACA
GAGGCAGGGCTACCTTCCTGTCTGAAATTACTGGATGAGCCTGACCCTCA
AGTGGATTTTGTGAAAGCTTTTGCTGTCTCATGGAAGGTGCTCCAAATGC
ACGAAAGGCTTACCGTAATCGCTGGTGACCCCTACAGTAGCGGGCCTTTG
GAAGAAGTATTGGTCGCCATGGACTTATTGCACAGAATCCCTGGCCTTTA
TGTGCAACCTCTTGGCGGTTGACAGTTCAATATCTGCATAGCAAATTGGC
GCCTTTGGCATTTTGCCAGCGGGACTTGGGCGTCCTGTTGTGCATTTCGC
ACTCCTGCGGAAGGGTTTGCACAAGACTGGAAGAGCACTGTTCTACAAGC
ATACGCTACAGCTCGCTCTCCATCCCCCAGGGGCCCACGATAGTGGGGAC
GCGAGGCCAATGGCAGTTCCATCTGGCTTGTAGTGCCATGACGCTGTATG
ATGTGATGTGATGTGATGTGATGTGATGTGCACTCTAATGTACTGTAGTT
TGACATGACATGACATGACATCACATCACACAGTCTCATCAGGCTACGTG
CCCTTAGCCGCGGGACGGCGCCCCAGCAGTGCACTGCTATGATGCTATGC
GATGTGATGTGTAGTGCACTCTATTGTACCTTGGTCTGACATAGCGTGGC
ATCACGGCAGCAGTGTGTTTGTCAGCCACCGGCCAGTGGCGGGCCTACCC
GGTGCATCGAAACGTGGTAATGAGCACGCATGCACGCATGCACACACACA
CACAAGTCTCAGTTACAACCCGGACCGACATCCCCCCCCGGGGGGCGCCT
CCATGTGCCGTTTGCAGGGCAAACGGCGTGCACGCCTTCAAAGGGAACGG
AAGCAACGCCTCCCAGCGCGGCACTGCGGCCGCCGGCGGCGGCACTGTGG
GTGCTCCAGCCGGTGATGGACCACCCCGTAGGCGAAACAAGCAGCCCCCG
CTCCGCGGCGACCACCTCCGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig87:472068..473588-

>mRNA_S-ischiensis_contig87.20279.1 ID=mRNA_S-ischiensis_contig87.20279.1|Name=mRNA_S-ischiensis_contig87.20279.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=390bp|location=Sequence derived from alignment at S-ischiensis_contig87:472068..473588- (Schizocladia ischiensis KU_0333)
ATGGAAGATGCCCCGACGACCCACCGCGGACAGACACCGAGATGGAAGAT
GCCCCGACGACCCACCGCGGACAGACACCGAGGGCAAACGGCGTGCACGC
CTTCAAAGGGAACGGAAGCAACGCCTCCCAGCGCGGCACTGCGGCCGCCG
GCGGCGGCACTGTGGGTGCTCCAGCCGGTGATGGACCACCCCGTAGGCGA
AACAAGCAGCCCCCGCTCCGCGGCGACCACCTCCGAGGCAAACGGCGTGC
ACGCCTTCAAAGGGAACGGAAGCAACGCCTCCCAGCGCGGCACTGCGGCC
GCCGGCGGCGGCACTGTGGGTGCTCCAGCCGGTGATGGACCACCCCGTAG
GCGAAACAAGCAGCCCCCGCTCCGCGGCGACCACCTCCGA
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