mRNA_S-ischiensis_contig87.20277.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20277.1
Unique NamemRNA_S-ischiensis_contig87.20277.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig87.20277.1 vs. uniprot
Match: D8LRB0_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRB0_ECTSI)

HSP 1 Score: 217 bits (553), Expect = 1.610e-60
Identity = 110/172 (63.95%), Postives = 138/172 (80.23%), Query Frame = 1 
Query:   82 RRAGTGMPSLLACLKGLRRAGAWLSEREYACYVAGFTEVVSTGEKAWQALSKRRPAPDVGAVERVKAAVIEARHLMEEYGGTSDSAPHAGARLVARMARGLLDTDGERIHELCRDMATAARAAVVVPEEVFEDETAGELQLRYVAHLEGEPLDRAARMPDKVRALGQLLAPF 597
            ++ G+G+PSLLACLKGL+RAG  LSER + CYV GFTE+VS  EKAW A+SKR P PDV AV+RVKAA+IE  HL E++GG +   PH+GARLV RM RGLL++DGER+ EL + +ATAARA +VV  +VF+DE AGELQLRY+A L+G PLD+AAR  +K+R L +LLAPF
Sbjct:  306 KQYGSGLPSLLACLKGLKRAGTRLSERHFFCYVGGFTELVSAAEKAWVAISKRSP-PDVAAVDRVKAAIIEGTHLAEDHGGGTGDVPHSGARLVVRMVRGLLESDGERLKELSKRIATAARAPIVVG-DVFQDEAAGELQLRYMASLDGAPLDKAARTHEKLRTLSELLAPF 475
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BLAST of mRNA_S-ischiensis_contig87.20277.1 vs. uniprot
Match: A0A6H5LG27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LG27_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 8.740e-42
Identity = 84/135 (62.22%), Postives = 106/135 (78.52%), Query Frame = 1 
Query:  193 EVVSTGEKAWQALSKRRPAPDVGAVERVKAAVIEARHLMEEYGGTSDSAPHAGARLVARMARGLLDTDGERIHELCRDMATAARAAVVVPEEVFEDETAGELQLRYVAHLEGEPLDRAARMPDKVRALGQLLAPF 597
            E+VS  EKAW A+SKR P PD  AV+RVKAA+IE  HL E++GG +   PH+GARLV RM RGLL++DGER+ EL + +ATAARA +VV  +VF+DE AGELQLRY+A L+G PLD+AAR  +K+R L +LLAPF
Sbjct:  812 ELVSAAEKAWVAISKRSP-PDAAAVDRVKAAIIEGTHLAEDHGGGTGDVPHSGARLVVRMVRGLLESDGERLKELSKRIATAARAPIVVG-DVFQDEAAGELQLRYMASLDGAPLDKAARTHEKLRTLSELLAPF 944
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRB0_ECTSI1.610e-6063.95NB-ARC and TPR repeat-containig protein n=1 Tax=Ec... [more]
A0A6H5LG27_9PHAE8.740e-4262.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:457234..462015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.5
Seed ortholog evalue1.6e-53
Seed eggNOG ortholog2880.D8LRB0
KEGG koko:K10407,ko:K19360
KEGG Pathwayko05132,map05132
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Exons5
Model size847
Cds size846
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20277.1prot_S-ischiensis_contig87.20277.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 457234..462015 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817354.4766617-CDS-S-ischiensis_contig87:457233..4575151622817354.4766617-CDS-S-ischiensis_contig87:457233..457515Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 457234..457515 -
1695741051.1532872-CDS-S-ischiensis_contig87:457233..4575151695741051.1532872-CDS-S-ischiensis_contig87:457233..457515Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 457234..457515 -
1622817354.490738-CDS-S-ischiensis_contig87:458733..4588291622817354.490738-CDS-S-ischiensis_contig87:458733..458829Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 458734..458829 -
1695741051.168326-CDS-S-ischiensis_contig87:458733..4588291695741051.168326-CDS-S-ischiensis_contig87:458733..458829Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 458734..458829 -
1622817354.502744-CDS-S-ischiensis_contig87:459181..4592721622817354.502744-CDS-S-ischiensis_contig87:459181..459272Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 459182..459272 -
1695741051.1783903-CDS-S-ischiensis_contig87:459181..4592721695741051.1783903-CDS-S-ischiensis_contig87:459181..459272Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 459182..459272 -
1622817354.5170803-CDS-S-ischiensis_contig87:460901..4609931622817354.5170803-CDS-S-ischiensis_contig87:460901..460993Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 460902..460993 -
1695741051.187757-CDS-S-ischiensis_contig87:460901..4609931695741051.187757-CDS-S-ischiensis_contig87:460901..460993Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 460902..460993 -
1622817354.531991-CDS-S-ischiensis_contig87:461730..4620151622817354.531991-CDS-S-ischiensis_contig87:461730..462015Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 461731..462015 -
1695741051.1973734-CDS-S-ischiensis_contig87:461730..4620151695741051.1973734-CDS-S-ischiensis_contig87:461730..462015Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 461731..462015 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20277.1

>prot_S-ischiensis_contig87.20277.1 ID=prot_S-ischiensis_contig87.20277.1|Name=mRNA_S-ischiensis_contig87.20277.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=282bp
PAAAAAAAAGSALPPPPRPRLPETVPARRAGTGMPSLLACLKGLRRAGAW
LSEREYACYVAGFTEVVSTGEKAWQALSKRRPAPDVGAVERVKAAVIEAR
HLMEEYGGTSDSAPHAGARLVARMARGLLDTDGERIHELCRDMATAARAA
VVVPEEVFEDETAGELQLRYVAHLEGEPLDRAARMPDKVRALGQLLAPFL
SSHSRGTSPRAQAQGVTVLPGSGGYGSYSYGGGFASNGHNGPGGFAVGFT
HGRFSHALGDSGGGGGGGGIGIGAELLVPVRA
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mRNA from alignment at S-ischiensis_contig87:457234..462015-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20277.1 ID=mRNA_S-ischiensis_contig87.20277.1|Name=mRNA_S-ischiensis_contig87.20277.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4782bp|location=Sequence derived from alignment at S-ischiensis_contig87:457234..462015- (Schizocladia ischiensis KU_0333)
CCTGCCGCCGCCGCCGCCGCCGCCGCCGGCAGTGCGCTGCCGCCGCCGCC
GAGGCCGCGTCTTCCCGAGACGGTGCCGGCTCGGCGCGCCGGCACCGGCA
TGCCGTCGCTGCTGGCGTGCCTCAAGGGGCTGAGGAGGGCGGGGGCGTGG
CTGTCGGAGCGGGAGTACGCCTGCTATGTGGCGGGGTTCACGGAGGTGGT
TTCGACGGGGGAGAAGGCCTGGCAGGCATTGTCGAAGCGGCGGCCGGCGC
CGGACGTGGGGGCGGTGGAGCGGGTCAAGGCCGCGGTGGGTGCTGCGGAC
GGACGGACGGACGGGGTGACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGC
CTGTGTGTGTTTGTTTTTTTCTCCCTGCGTGGAAGTTCTGTGCTCGATTA
TGTGTACGCTGACACTTCGAAGCACTGTTGTTGTACGTACTCAGGTGTGA
GTACATCTGCTTCGAAGTGTACTTCGAAGTATAATAACAGCATGCATGCA
GTGCATGAACAATAGTTTTGTGTTGCTTCTTTGCCATCGGTTTTGTGCCC
TGCGAGCGAAAGGAGGGCTTCAGGTGAGGTTGTATCGAGTTTGGGACGGC
GCCCAAACTCACAAGCAGTCGACAGGGGCAAGTAGCTATTCGGCCATTGA
ATCTGATGGGGGGCGTCGATACGGACTGTTGATGCCCATGAGGACTGCAC
TCTTATGGATGGCAGCTCTACAATGAGATTCTCTCTCCTTCCCGATCAGC
CTCTTCACGGGTAATTGCATGATGCCCCATGCATGATATCGACTGCAACC
TTGCATCAGAGACGAGAAGGCTATCCTTGCTACATCAATATAATGTTTCG
GAAATAGGTACTGTAGGAGTACTACATGTGTTTATTGGAACAATATTGTC
GACCCACTCAGTTGGGCGTCTTGCGGCGCCGTTCTGAGATGGAAAAGAAA
CCCTCCCCGCTTTTCATGCCAGGTGATTGAGGCCCGCCACCTGATGGAGG
AATATGGGGGTACGTCCGACAGCGCCCCGCATGCAGGGGCACGCCTCGTG
GCCCGCATGGCCAGGTGAGGAGCAGAGCAGCCCCACTGTAACTCAATGCA
CCGCAACTGTGCCGAAACTGTACTTCAACTGAATCACAGCTGTACCTCAA
CAGTACCGCACCTGCACTGCAACTGTACTTCAACTGAACCTCAACTGTAC
CACAACTGTATTTCAACTGAACCACGACTGTACCTCAACTGTACATTAAC
TGCACCGCAACCGTTGAGCAAACTGTACCACAACTATACCGCAACTGTGC
CGCAACTATACCTCAACTGTACCTCAACTGTAGTGCTTCTGTACCACAAC
CGTACCTCAACTGTACCGCAAATATACCGCAACTCTACCGCGACTGCACT
GCAACTGTACCGCAACTGTACAGCAACTGTGAACCCAGTGCTCGAGCACA
GAACACTGTGTTGTTAAATCCGTGTGCTGTAAGTGCATGCCTGCACGTTG
ACAGTACTGCGGTCCACTGTAGCCGCTGCTGGTAAGGTGCAGCAGTGTTG
TACTGCAACCCGCAAGTCCTGTTTGCTCGTACGGTAGATGCGTGTGAGCG
CTTCGACTGTACCGCGACTGTAACCGGTACAGGCTACATAGCCCGCCCTT
GTAAGTGCTACTGCAGCATTCACTGCCCACGACAACAGTAGCAGCAGCAG
CAGCAGCAGTACGAGTACTTTAGTAGTAAGTAGTAGTACTCGAGTAGTAG
TACTACTACTAGTACAGTAGTGCTTCGTAGTATTTAGCAGCCCATGTTCT
GGCTGCAGGGGCATCTCCTCAGAAGGCTCTACGTGGCCAGCACCGTGCTT
GAAACAGCTTGAACACCCCACCGGAAATCGTCCGCGGGGACGGTGTCAAT
GGCAATCGTCGCAACCTGGTCGTCGTCGCTACGCGTGCGCCAAAGGTGTA
CTTACCATGCTCACCTACTTACGTTAGCTCTATGCCGCCTTGTCTCTTGC
GCAACGATATACGAAGTACTACGAAATATATATATACTTCAAGTGCCTGG
TATATATATACGAGCATGTTCTCATCGGCTTGTCTTGCGACATAACATTG
CCAGGTGTGCTTTGCCTACAGCCCTAAGTACCAAAACAAATGATGTGATG
TGATGTGATGTGATGTCCACGTACAGTACTTGCAGTAGAGTGCACATCAA
TGTAGTGTGATGCGGTCTGATGTGACATACTCGAGTATATATATATATAT
ATATATATATATTACTTGTACTCACCAGCTTGTCTGGCGACATAACCTCG
CGAGGCGTGCTTTGCCGACAGCGCTAGGTACAAAAAATGATGTGATGTGA
TGTGATGTCAACCTACAGTACTTAGAGTGCACATCAATGTACTCGTAGTG
TAATCTGATGCGATATGTATTACTCGCACTCATCGGCTTGTCTTGCGATG
TGATGTGATGTGATATATACGAGTATATATATATATGTATTACGCGTACT
CATCGGCTTGTATTGCGACAGCACAAGGCGTGCTCAGCTGACTGCCCTAC
AGTAAGTCAACACTTCCCCGGGGCTTGCCCTCCGACAAGAGTATCTACAC
GGTGGGTGCAAAAAAAGAGGTCGGGGTGGGGAGGAAAAGGGAGAACCAAC
AACTCCGCGCCGCCGGATTGTGCGGGCGATCGGTTCATTCCAGGGGCCTC
CTCGACACCGACGGCGAGCGCATCCACGAGCTTTGCCGGGACATGGCTAC
TGCAGCCCGGGCGGCCGTTGTCGTCCCAGAGGAGGTGAGCGATGCAACTG
TAGGTACGAGTACGAGGACCCTCAGGGGACGGCGGGACATGGGAAGTGAT
GTGATGCATGTGATGGGAAGTGATGTGATGCGATGCGATGTGATGTGATG
CGACACAATGCGGTGTGATGCGATGTGATGCAGTGCGATGTGATGTGATG
TGATGTGATGCGATTTGATGTGTACTCTAATGTACTGCGGCCTTGACACT
GCACCACGTCACGGCCGATCACGCCACGCCATGGACACCACTGATGGCCT
CGACAGCGGCATTGATGCGATGTCAGGGCCATTGCTTGTGACTCAACCAT
GGTGCCTCGGCACCTGCCCTCCCCCACCCCCCCCAGGTATTTGAGGATGA
GACGGCCGGGGAGCTGCAGCTGCGCTACGTGGCCCACCTGGAGGGCGAGC
CGCTGGACCGGGCCGCGCGCATGCCTGACAAGGTGATGGGGAAAGGCTGA
CAACACAAACAAACTCCTTCCAGCCTTGTTGGAGGAACTACAGTACTTCT
TCCGTGCTGTAGAGTACTTCGCAACAACTGCAAAGACCTTATGAAGTACG
TAGTAGTGCTTCGAGTCAGAACATCTGTATCCATGATGTTTGTTACGACA
CACTTGTCGAAACATGTCGCCTCATGGTGAACCGCCGTTCATTAGCCCCG
TTACGGTGTTTCGACAGGTTCTGAGCCCTGTTAGCCTCGGCAGGGAACGC
AGGCAGTCAGGCAGGCAGTGACGAGGTCTGGGGCCTTGTGTGCTGACTAT
GGAAGATGTAGCAGGAATCCCCACGGTGGAATACAGGAAGCAAGACACTC
TCCTAGACTGTGTGCTGCAAGGGGTTGTAGAGAGTCTTGTATGAGGGGAC
AAGATCGCCACTTGTGTCGAGGGAACGTGTCAGAACATCTGTATCCATGA
TGTTTATTGCAACACACATGGCATCTTGTCCCCTCATACAAGACTCTCTA
CAACCCCTTGCAGCACACAGTCTAGGAGAGTCTGTTGCTCCCTGTATTCC
ACCTTGGGGATTCCTGCTACATCTTCCATAGCACACAAGGCCCCAGGCCT
TGTCACTGCCTGCCTGACTGCCTGCATTCCCTGCCGAGGTTAACGGGGCT
ATGAATGGCGGTTCACCATGAGGCGACATGTTTCGACACTTCGTACTTCG
AAGTAGTATATATAGTCACGGCTCACGTGCATATATATGTTCTTCCAGAG
TACGAGTACATGTACATGGAGTCAATGCACACGCTTGAGCTTGTTAGGCC
AAAAAAAAGGCTTGCCTTGCTGGGGCGGGGGGGACTTGTGCCTGGCGAGG
TCGCCTTCAGTACAGTTCAGCACAGTTCAGGGCAGTACAGTACACTTCAG
TACAGTTAGTGACACTTCAGTACAGTTCATTGCATGTACAGTTCTGTGCG
GTTGAGTACATCTCAATACAGTTGAGCACATTTCATGCCGTGGATTGCAT
TTCAGTATCACATCGCATCAGGGCCCCGTCGTCCTCTACGAGCTACTGCA
CAGGTTCGGGGACCTAGATTGCTCACAGAACACCCCCTCCCCTCCCTCCC
CTCCCCTACCTTCCTTCTCCCCCACCCCCCCTTCCCGCCCCGTCCCTCCC
TCGCCTCCCCTGGCCTCCCCTCCCCCCTGCCCTCCCCACACCCAACACAG
GTTCGCGCCCTGGGGCAACTCCTGGCCCCCTTCCTGAGCTCCCACTCCAG
GGGCACCTCCCCCCGCGCCCAGGCCCAGGGTGTAACTGTCCTGCCCGGCA
GCGGCGGCTACGGAAGCTACAGTTACGGCGGCGGTTTCGCCAGCAACGGC
CACAACGGCCCGGGGGGTTTCGCAGTCGGTTTCACTCACGGGCGGTTCTC
CCACGCCCTGGGGGACAGCGGTGGCGGCGGCGGCGGCGGCGGAATTGGCA
TCGGCGCTGAGCTGCTTGTGCCCGTGAGGGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig87:457234..462015-

>mRNA_S-ischiensis_contig87.20277.1 ID=mRNA_S-ischiensis_contig87.20277.1|Name=mRNA_S-ischiensis_contig87.20277.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1692bp|location=Sequence derived from alignment at S-ischiensis_contig87:457234..462015- (Schizocladia ischiensis KU_0333)
CCTGCCGCCGCCGCCGCCGCCGCCGCCGGCAGTGCGCTGCCGCCGCCGCC
GAGGCCGCGTCTTCCCGAGACGGTGCCGGCTCGGCGCGCCGGCACCGGCA
TGCCGTCGCTGCTGGCGTGCCTCAAGGGGCTGAGGAGGGCGGGGGCGTGG
CTGTCGGAGCGGGAGTACGCCTGCTATGTGGCGGGGTTCACGGAGGTGGT
TTCGACGGGGGAGAAGGCCTGGCAGGCATTGTCGAAGCGGCGGCCGGCGC
CGGACGTGGGGGCGGTGGAGCGGGTCAAGGCCGCGCCTGCCGCCGCCGCC
GCCGCCGCCGCCGGCAGTGCGCTGCCGCCGCCGCCGAGGCCGCGTCTTCC
CGAGACGGTGCCGGCTCGGCGCGCCGGCACCGGCATGCCGTCGCTGCTGG
CGTGCCTCAAGGGGCTGAGGAGGGCGGGGGCGTGGCTGTCGGAGCGGGAG
TACGCCTGCTATGTGGCGGGGTTCACGGAGGTGGTTTCGACGGGGGAGAA
GGCCTGGCAGGCATTGTCGAAGCGGCGGCCGGCGCCGGACGTGGGGGCGG
TGGAGCGGGTCAAGGCCGCGGTGATTGAGGCCCGCCACCTGATGGAGGAA
TATGGGGGTACGTCCGACAGCGCCCCGCATGCAGGGGCACGCCTCGTGGC
CCGCATGGCCAGGTGATTGAGGCCCGCCACCTGATGGAGGAATATGGGGG
TACGTCCGACAGCGCCCCGCATGCAGGGGCACGCCTCGTGGCCCGCATGG
CCAGGGGCCTCCTCGACACCGACGGCGAGCGCATCCACGAGCTTTGCCGG
GACATGGCTACTGCAGCCCGGGCGGCCGTTGTCGTCCCAGAGGAGGGGCC
TCCTCGACACCGACGGCGAGCGCATCCACGAGCTTTGCCGGGACATGGCT
ACTGCAGCCCGGGCGGCCGTTGTCGTCCCAGAGGAGGTATTTGAGGATGA
GACGGCCGGGGAGCTGCAGCTGCGCTACGTGGCCCACCTGGAGGGCGAGC
CGCTGGACCGGGCCGCGCGCATGCCTGACAAGGTATTTGAGGATGAGACG
GCCGGGGAGCTGCAGCTGCGCTACGTGGCCCACCTGGAGGGCGAGCCGCT
GGACCGGGCCGCGCGCATGCCTGACAAGGTTCGCGCCCTGGGGCAACTCC
TGGCCCCCTTCCTGAGCTCCCACTCCAGGGGCACCTCCCCCCGCGCCCAG
GCCCAGGGTGTAACTGTCCTGCCCGGCAGCGGCGGCTACGGAAGCTACAG
TTACGGCGGCGGTTTCGCCAGCAACGGCCACAACGGCCCGGGGGGTTTCG
CAGTCGGTTTCACTCACGGGCGGTTCTCCCACGCCCTGGGGGACAGCGGT
GGCGGCGGCGGCGGCGGCGGAATTGGCATCGGCGCTGAGCTGCTTGTGCC
CGTGAGGGCCGTTCGCGCCCTGGGGCAACTCCTGGCCCCCTTCCTGAGCT
CCCACTCCAGGGGCACCTCCCCCCGCGCCCAGGCCCAGGGTGTAACTGTC
CTGCCCGGCAGCGGCGGCTACGGAAGCTACAGTTACGGCGGCGGTTTCGC
CAGCAACGGCCACAACGGCCCGGGGGGTTTCGCAGTCGGTTTCACTCACG
GGCGGTTCTCCCACGCCCTGGGGGACAGCGGTGGCGGCGGCGGCGGCGGC
GGAATTGGCATCGGCGCTGAGCTGCTTGTGCCCGTGAGGGCC
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