mRNA_S-ischiensis_contig87.20276.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20276.1
Unique NamemRNA_S-ischiensis_contig87.20276.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:456453..457173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size280
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817350.1725934-CDS-S-ischiensis_contig87:456453..4565421622817350.1725934-CDS-S-ischiensis_contig87:456453..456542Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 456454..456542 -
1695741047.723-CDS-S-ischiensis_contig87:456453..4565421695741047.723-CDS-S-ischiensis_contig87:456453..456542Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 456454..456542 -
1622817350.1846232-CDS-S-ischiensis_contig87:456983..4571731622817350.1846232-CDS-S-ischiensis_contig87:456983..457173Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 456984..457173 -
1695741047.7338388-CDS-S-ischiensis_contig87:456983..4571731695741047.7338388-CDS-S-ischiensis_contig87:456983..457173Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 456984..457173 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20276.1prot_S-ischiensis_contig87.20276.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 456454..457173 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20276.1

>prot_S-ischiensis_contig87.20276.1 ID=prot_S-ischiensis_contig87.20276.1|Name=mRNA_S-ischiensis_contig87.20276.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=93bp
AGAGKKRRSWSSSRPPPPPRPGLGAPVLTEDVSVLLRQAHDMLYATAGGS
GGGGYGGGANAGQGGNASRRGFFHTKHGGGAGAGGFGSGGAMG
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mRNA from alignment at S-ischiensis_contig87:456453..457173-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20276.1 ID=mRNA_S-ischiensis_contig87.20276.1|Name=mRNA_S-ischiensis_contig87.20276.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=721bp|location=Sequence derived from alignment at S-ischiensis_contig87:456453..457173- (Schizocladia ischiensis KU_0333)
GCCGGGGCCGGGAAGAAGAGGCGGTCTTGGTCTTCGTCCCGGCCGCCGCC
GCCGCCGCGGCCGGGGCTGGGCGCCCCCGTCTTGACGGAGGACGTGTCGG
TGTTGCTGCGGCAGGCGCACGACATGCTGTATGCCACGGCCGGCGGCAGC
GGCGGCGGCGGTTACGGTGGTGGTGCGAATGCCGGCCAAGGTGAGACGGG
CGACCGGCGCTTCGCGGCCGGCCCAAGTGCTACGAGTATGTGCTTTGAAG
GCGCCGGGTGCTTCCGTGTGAAGGCGGCGGTGGGTGCTTCCGTGTTGGGG
GTTCAGAACGCCATTCCCGCTCGCTCATTTGCCACCTCGTTTGCAAGAGA
AGTGCCGAGTAGACAAGACACCTCTTTAACTCTTCTCTCACCCACTTCTG
TTCTCTCTCCATCCAAAGAAGTGCTACGTAGGGACACATCATCGTCAACT
CTTTTCCCACACGCTCGCTGTCCTCTCGCAACAAACCCCCACCCGCCCAG
GGTTGGCACTTAACCCCTACTTAAGTAGTGCCCTGTTAGGCCCTTAATTA
GGGGTAGCTATACCTAAAATGGAGGCTAATTAGGCCCTAATTAACCTCTA
AGTTCCACCCTGCCCCCACCTGCCCCAGCAGGCGGCAACGCCTCCCGCCG
CGGCTTCTTCCACACCAAGCACGGGGGCGGCGCCGGCGCCGGCGGTTTTG
GCAGTGGCGGGGCCATGGGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig87:456453..457173-

>mRNA_S-ischiensis_contig87.20276.1 ID=mRNA_S-ischiensis_contig87.20276.1|Name=mRNA_S-ischiensis_contig87.20276.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=558bp|location=Sequence derived from alignment at S-ischiensis_contig87:456453..457173- (Schizocladia ischiensis KU_0333)
GCCGGGGCCGGGAAGAAGAGGCGGTCTTGGTCTTCGTCCCGGCCGCCGCC
GCCGCCGCGGCCGGGGCTGGGCGCCCCCGTCTTGACGGAGGACGTGTCGG
TGTTGCTGCGGCAGGCGCACGACATGCTGTATGCCACGGCCGGCGGCAGC
GGCGGCGGCGGTTACGGTGGTGGTGCGAATGCCGGCCAAGGCCGGGGCCG
GGAAGAAGAGGCGGTCTTGGTCTTCGTCCCGGCCGCCGCCGCCGCCGCGG
CCGGGGCTGGGCGCCCCCGTCTTGACGGAGGACGTGTCGGTGTTGCTGCG
GCAGGCGCACGACATGCTGTATGCCACGGCCGGCGGCAGCGGCGGCGGCG
GTTACGGTGGTGGTGCGAATGCCGGCCAAGGCGGCAACGCCTCCCGCCGC
GGCTTCTTCCACACCAAGCACGGGGGCGGCGCCGGCGCCGGCGGTTTTGG
CAGTGGCGGGGCCATGGGCGCGGCAACGCCTCCCGCCGCGGCTTCTTCCA
CACCAAGCACGGGGGCGGCGCCGGCGCCGGCGGTTTTGGCAGTGGCGGGG
CCATGGGC
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