mRNA_S-ischiensis_contig87.20273.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig87.20273.1 vs. uniprot
Match: A0A6H5LG27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LG27_9PHAE) HSP 1 Score: 262 bits (670), Expect = 5.800e-73 Identity = 272/505 (53.86%), Postives = 324/505 (64.16%), Query Frame = 1
Query: 19 GISVLGTYRESIRVYRDKAVQHGQGASLKLAAAVKLLGDFLILSGDMESAEGMYREACARVEARSKRDRAKPPVQAFFSQVLKGLARCLVGQGKLEEAERRYSEAMALGSTQARTAGASRVVLDYCHVLRSLGQFERASAIGGQALALLQTGPSGPHSAEVAKCIATLAGLAAQQGKVGVAEDLYRRSLATTARALGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYAAQGHEDTSAAQALHRTALSIQELRLGLEHPEVARTCHSLGLLLLKS---AAKRPVPGHVRGDAGRGGSGSSSLGGSSSAPGSWAHESTTGYSAFGSDGDYGDDPSADGVASDSSWDEGRASGDLSLSGGSAGARR-----------RWPRDQDQHRAEAMYLLERALHVYKATLGPDHATTRECSAAIATVEEGGGLRLPSRPEPA 1491
G + L Y +SIR YR+KAV GQG+SLKLAAAVKLL D+L L+ + SA Y+EA ARVEAR++ DRAKP Q+F +QVLKG+ARCLV +G+LEEAE R+ +AM++ +T R GASR +L+YC +LR +G+F+RASAIGGQALAL+QTGP+GPHSAE A C+A+LAGLAAQQGK ++E+LYRRSL R G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Y +QG +D +AA+ LHR AL+I+E RLG HPEVA+TCH+L LLLLK+ A PV G +SA W E A PS++ S S R G RW +H+ EA+ LLERAL V++ TLG DH T E A+A GG P P P+
Sbjct: 1450 GFTALEAYTDSIRAYREKAVASGQGSSLKLAAAVKLLADYLFLTNEKTSAMDYYKEALARVEARTEHDRAKPQTQSFSAQVLKGIARCLVAEGQLEEAEERFQKAMSMENT--RNPGASRAMLEYCQILRQMGEFDRASAIGGQALALVQTGPTGPHSAESAVCVASLAGLAAQQGKPALSEELYRRSLGVALRVFGSRHPAVAAETNVLAVFLVEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTSQG-QDPTAAERLHREALAIREARLGRNHPEVAQTCHNLALLLLKTEPTATHSPVGGGKPSP-------------KTSADDKWQWEKVKPSEAL---------PSSETGPSSSLLKGSRMGGGXXXXXXXXXXXXXXXXXXXXESYRW-----RHK-EAIKLLERALAVHRETLGDDHPVTEESLQALAAA---GGSSTPVTPSPS 1920 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig87.20273.1 >prot_S-ischiensis_contig87.20273.1 ID=prot_S-ischiensis_contig87.20273.1|Name=mRNA_S-ischiensis_contig87.20273.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=511bp QAIEEKGISVLGTYRESIRVYRDKAVQHGQGASLKLAAAVKLLGDFLILSback to top mRNA from alignment at S-ischiensis_contig87:434468..446684- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig87.20273.1 ID=mRNA_S-ischiensis_contig87.20273.1|Name=mRNA_S-ischiensis_contig87.20273.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=12217bp|location=Sequence derived from alignment at S-ischiensis_contig87:434468..446684- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig87:434468..446684- >mRNA_S-ischiensis_contig87.20273.1 ID=mRNA_S-ischiensis_contig87.20273.1|Name=mRNA_S-ischiensis_contig87.20273.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=3066bp|location=Sequence derived from alignment at S-ischiensis_contig87:434468..446684- (Schizocladia ischiensis KU_0333)back to top |