mRNA_S-ischiensis_contig87.20270.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20270.1
Unique NamemRNA_S-ischiensis_contig87.20270.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:426198..428253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size214
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817349.8927462-CDS-S-ischiensis_contig87:426197..4263181622817349.8927462-CDS-S-ischiensis_contig87:426197..426318Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 426198..426318 -
1695741047.493464-CDS-S-ischiensis_contig87:426197..4263181695741047.493464-CDS-S-ischiensis_contig87:426197..426318Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 426198..426318 -
1622817349.9046595-CDS-S-ischiensis_contig87:428161..4282531622817349.9046595-CDS-S-ischiensis_contig87:428161..428253Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 428162..428253 -
1695741047.508928-CDS-S-ischiensis_contig87:428161..4282531695741047.508928-CDS-S-ischiensis_contig87:428161..428253Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 428162..428253 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20270.1prot_S-ischiensis_contig87.20270.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 426198..428253 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20270.1

>prot_S-ischiensis_contig87.20270.1 ID=prot_S-ischiensis_contig87.20270.1|Name=mRNA_S-ischiensis_contig87.20270.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=71bp
ARAREPGPQRLWGRCWDWCGEVAACWASGEWHRGPEANGGGRGAQGHAGA
GDGHGRQWGEGNASASSTKSH
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mRNA from alignment at S-ischiensis_contig87:426198..428253-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20270.1 ID=mRNA_S-ischiensis_contig87.20270.1|Name=mRNA_S-ischiensis_contig87.20270.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2056bp|location=Sequence derived from alignment at S-ischiensis_contig87:426198..428253- (Schizocladia ischiensis KU_0333)
GCAAGGGCAAGGGAGCCCGGGCCGCAACGCCTGTGGGGGCGGTGCTGGGA
CTGGTGCGGGGAAGTTGCGGCCTGCTGGGCAAGCGGCGAGTGGTGAGTTT
TTGTGTGCTTGGGGTACCTCGTGCTTCGTAAGCTGCTGTAGAGTACAAGT
AGTATGAGTATGTAGCCAATCCCAAGTGCCAAGTCGTGCGAGCCGTGCAA
ACGTGGGCCTGCGAGAGCACGTCTGTTCATATCTCTGTGCAGTGCGGTGC
AGTACAGTACAGGACCGTACAGAAGGAAGTTCAGCGGTCCTGTCTGCTTG
GAGATGGTGGATTGAACTGTGAGATAGGGTCCCGTCGTGTTGGCTCTTCC
TTCCCGGGGGTAGCTAGCCCTTGGAGGGTGGTGGGAGGCTTATTATCTCA
CGCTAAGGTCCCGTGGTCTGGTGCGCGAATAGCTATTGCCAAGTTGTCCT
CAAGGGGGTTGAGCGAAGCCCCGCCCCGTCCAGGAAGTTGCATTCTCCAA
CGCCCTTCAAAGCACCATGCGCGGCGTAAAATTGCCACGTCATTAGCTAC
TATGAAGCAGGAAGTGTTTCAAAGCGTTTTGCTCTTTCATCTTCATGTCA
CGTGTACGCTGATGTTTACAGCAGGTGGCTGCGCCTGCTCTGCGTCTTTG
CCTACTCTGCATCGCCACCTGCCAGACCGCCACTCCTACGCCCCCCTCCC
CCCTCCTCCCTCCTCCGCTTCCTCCTCTTCCTCTCCCTCCGTTTCGCCAC
ACATTCCTTCCCTGGTGAGATAAGGAAGGGCCACTGTTGAGGCCTTTAGT
GGCGCAGCCTGCACCTAATATAGCCCTATGCGGTGTTGTAACCTCTCCTG
TTAGTGCAGCAGAGTACTTGCACTACTTCCCGGGAGTAGGTACGTACCGG
TATTCACATCCAACAGAGTAGGTATAGGTATACTGCGTAGTATATATATG
TACGAGTACTCACGTTGTGCTTGCCGTAGTCCCGAGACCATTGACCACGC
GCCTCGGTCGAGACGGAACAGTAGTACAACATGTAAACAACGATGTGTCC
GGGTTAAACGAAGCCCCGCCCAAGATTTTTTGTAGGGGGTGGCGGCCATT
TAACTCTTGTTTCCTGTCCGGCTAAAGGTCCCTCAGGCTGCTGCGGCCCT
GCTGGGACGAACAACGCTGGCGCCGGTAGTTATCAGCTAGTGTCATCGCG
GGGTGAACGCCGGAGCGATGCGATGTCGGGCATCTGGCCGCGATGGGCAA
TGCTATGCGCAGTGTCGGTAATGTTTATGTCCCGGCTACTGTCCTTGTAT
TTGATGGTGCATAAATGTAATACTTCCCAAGTACTTGAAGTATATGGTCT
AAGGCTACTTGCCGCCTCACAAAAAAATGAACGTGAGCCAGTTCGATATC
GCAAGCATCGCGGCCGGTGTGCTCAACGTGCGACGCCCCCCCCCCCCCGA
ATTTGGCCGCGATGCGACAAGTACCCGCGTAGAGCATTGGCCGGATTAGA
CCCTTTCGTACCACGGCGCCACGAGCTCGAAGCGTATGCTTGTGTCGCCC
CGATGTGGTGTGCTGTAGTTGATGGACTCCGCGGGCACCCATGAATCAAT
TCGAGCCATTTTTTTTCGCAAGAAGATAAACAAGCGAGTGGGAAAGAAGA
GGTGTGACCTACATAGAGCCAGGTAATCATACTCGGCGGGGTCGGAGGCC
CGTGCGTAAAGCTCAGGGTAAGTGGGACATGACCGTTGGACCCACGTTGC
CCAGTCGAATTCACCCGTTTGCCGCTCGTGTGCCGCGTGCAGGCACGGGC
ACAAAGGCGGGTGCATCGGCGATCTGATGTGATGCGGTTCGATGCGATGC
AATGTGACGCGATGTATTGCGATGTGATGTGATGTGCACTCTAATCCACA
GTGGTTCTCCCATCGCATCACATCGAAATCGCCAGGCACCGCGGACCTGA
AGCCAACGGGGGAGGCCGTGGCGCCCAAGGGCACGCCGGTGCGGGTGATG
GTCACGGCCGTCAATGGGGTGAGGGCAACGCCTCCGCAAGTTCCACGAAG
TCTCAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig87:426198..428253-

>mRNA_S-ischiensis_contig87.20270.1 ID=mRNA_S-ischiensis_contig87.20270.1|Name=mRNA_S-ischiensis_contig87.20270.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=426bp|location=Sequence derived from alignment at S-ischiensis_contig87:426198..428253- (Schizocladia ischiensis KU_0333)
GCAAGGGCAAGGGAGCCCGGGCCGCAACGCCTGTGGGGGCGGTGCTGGGA
CTGGTGCGGGGAAGTTGCGGCCTGCTGGGCAAGCGGCGAGTGGCAAGGGC
AAGGGAGCCCGGGCCGCAACGCCTGTGGGGGCGGTGCTGGGACTGGTGCG
GGGAAGTTGCGGCCTGCTGGGCAAGCGGCGAGTGGCACCGCGGACCTGAA
GCCAACGGGGGAGGCCGTGGCGCCCAAGGGCACGCCGGTGCGGGTGATGG
TCACGGCCGTCAATGGGGTGAGGGCAACGCCTCCGCAAGTTCCACGAAGT
CTCACGCACCGCGGACCTGAAGCCAACGGGGGAGGCCGTGGCGCCCAAGG
GCACGCCGGTGCGGGTGATGGTCACGGCCGTCAATGGGGTGAGGGCAACG
CCTCCGCAAGTTCCACGAAGTCTCAC
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