mRNA_S-ischiensis_contig87.20255.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20255.1
Unique NamemRNA_S-ischiensis_contig87.20255.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:289648..294342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1063
Cds size672
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20255.1prot_S-ischiensis_contig87.20255.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 290022..294325 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817349.3348682-UTR-S-ischiensis_contig87:289647..2900211622817349.3348682-UTR-S-ischiensis_contig87:289647..290021Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 289648..290021 -
1695741047.1180146-UTR-S-ischiensis_contig87:289647..2900211695741047.1180146-UTR-S-ischiensis_contig87:289647..290021Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 289648..290021 -
1622817349.393134-UTR-S-ischiensis_contig87:294325..2943421622817349.393134-UTR-S-ischiensis_contig87:294325..294342Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 294326..294342 -
1695741047.1720994-UTR-S-ischiensis_contig87:294325..2943421695741047.1720994-UTR-S-ischiensis_contig87:294325..294342Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 294326..294342 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817349.3457863-CDS-S-ischiensis_contig87:290021..2902161622817349.3457863-CDS-S-ischiensis_contig87:290021..290216Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 290022..290216 -
1695741047.129246-CDS-S-ischiensis_contig87:290021..2902161695741047.129246-CDS-S-ischiensis_contig87:290021..290216Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 290022..290216 -
1622817349.35685-CDS-S-ischiensis_contig87:290457..2906611622817349.35685-CDS-S-ischiensis_contig87:290457..290661Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 290458..290661 -
1695741047.13868-CDS-S-ischiensis_contig87:290457..2906611695741047.13868-CDS-S-ischiensis_contig87:290457..290661Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 290458..290661 -
1622817349.3673449-CDS-S-ischiensis_contig87:292375..2925441622817349.3673449-CDS-S-ischiensis_contig87:292375..292544Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 292376..292544 -
1695741047.1485403-CDS-S-ischiensis_contig87:292375..2925441695741047.1485403-CDS-S-ischiensis_contig87:292375..292544Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 292376..292544 -
1622817349.3803234-CDS-S-ischiensis_contig87:294221..2943251622817349.3803234-CDS-S-ischiensis_contig87:294221..294325Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 294222..294325 -
1695741047.1595626-CDS-S-ischiensis_contig87:294221..2943251695741047.1595626-CDS-S-ischiensis_contig87:294221..294325Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 294222..294325 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20255.1

>prot_S-ischiensis_contig87.20255.1 ID=prot_S-ischiensis_contig87.20255.1|Name=mRNA_S-ischiensis_contig87.20255.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=224bp
MLNVKSRRCRREGCPKQPLFGKVGDRRGSYCKVHRQEGMVNITSPRCMTE
GCDRQPLFGNIGDNGGSAGGFRPRRAKYCRLHKPEGMVNVKIALCQHDAC
PKICQFGRPGDHRPSFCASHKQEGMVDLKSPRCQEDSCSKHPSFGFQSDR
RPLFCCEHQVAGMVNVRKLGPVKRSRNPRRLEVSVAAAPGPDSAAPPLET
QAGSTSGPEPDPELQVQSAAELV*
back to top

mRNA from alignment at S-ischiensis_contig87:289648..294342-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20255.1 ID=mRNA_S-ischiensis_contig87.20255.1|Name=mRNA_S-ischiensis_contig87.20255.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4695bp|location=Sequence derived from alignment at S-ischiensis_contig87:289648..294342- (Schizocladia ischiensis KU_0333)
CGCCCAGGGAGGCGGGCATGCTGAACGTGAAGAGCCGGCGCTGCAGGCGG
GAGGGGTGCCCCAAGCAGCCCCTGTTTGGGAAGGTGGGGGATCGCCGCGG
GAGCTACTGCAAGGTACACAGGTGCGTGGCACAATCTTTGCTACTGTTCG
CGTACTGTACTTTAGAGCTCTACTGTACTGTACATTAGTAGTGCTCACGT
TCTTACTACTGTACACTACTGTACCGTAGACCGTAGAGTGTGCACATCTT
GCTACTGTTAGTGTGCGGTACTTTGCTGTACAGTAGGTAGAGTGCTTCGC
AATCTTGCTCTAGTTTACTGTAGTGTACTGTCTACACTGTACTGTACTTG
CTGAATAGAGTGTATGGTAGCTCCTGCAAGATGCACCAGTGCGTGCCACA
ATCTTGCTGTCACTATGTACAGTACATAATACTGTGCTGTACAGTAGTGT
GTGCCGGTGGACAAACGGGGATCTGCCCCATTCTGCGCGTGCTGTGCCCA
CTGTTCTCGCTGCCACTGACGGCGTTGGGCTACTACTTCCAAGTACGCAC
AACAGGACATGCCTGCCAGGTTCATAGCTTGCCGGCCAGCGTACAATCCA
TGGCGTAAGTGCGGGTTGAGAAGTACTTTGAATCACTGTGTTGTTAATCA
GACCTCACATGATCTGTACTACAGTACTTGTATTTTTTTGTCCTGTCAAT
GGGGCGTGGGGCAGACAAACCACCGAGCCTAGGTACTGGCTGCAGCAGCG
CCACTGTGTACTGTGTACTTTGTAGTAGTACTACTGTACGTACTAGTGCT
TGCAAGTACTGTGCATACTACCAAGTACGAGTAGGGCACTTGTAAACTAC
TTCAGTAGTAGTAGCAGTAGCAGTAGTAGTAGTGTTAACAGGAACAACGC
AGGGCGAGGTGCGGGCCACGTCACTAAAGACCTCGAGAGTAGTAGTAGTG
GTTGTTGTTGTGGTGGTCTAGGTCGTAGTTGTTGTACGAGTAGCAGCAGT
AGTAGTAGCAGCAGTACGTAGTAGTAGTAGTAGTAAGTAGCACTTCCCTG
GAAGTACTCTAGAGTAGTAGTAGTAGTAGTAGTAGTATATATACTCTATA
TATGTACTCATGTGGTGCTTGCCGTAGTCCCGAGACCATTGACCCCGCTC
ATTGTTCGAGACGGAGTAGTAGTAGTAGTAGTAGTAGCAGCAGCAGTACA
CAGACATGCTCTGTGTGTTGAGCAGTACTGCAGGAGTCGCACACATGATG
CGAAACACGTGAGCGCTGTCCAGCTACAGTTGCTTACAACTGTACTCAAG
TACTCGTACTTTTGACTACTTCGAAGTAGTACAGTACAGTACAGGATCAC
TGCAAGTAGTCTTGTCTTCTACATTACTACAGTAGTAGGGCACCAAGTAC
CTACCCTTGTAGCAGGGCAAACCCGCAAGATTGTACGGTTGAGTCTGGGC
TGTCGACTATGCACGCACTGCTCTGTATGTCATGTCAACGAGTATAACAT
TCTACCGTACCGTAGTCTACTTCCAAACTACTTATTGTACAACTGTGTGT
ACAGCTGTACTACAGTACTTGTAGTACTCGTAGCACTGTACTAGTTGTGC
CACACACTGTTCAGGAAGTGCAGCACAGCACAGCCTGCTGTAAATTGCAG
CCTGGTATTGGAGGCGGGCAAGTTTGTGCACCTTGCCGTGATTCCCACAG
CCCAGCGACCATACTATATTCCACCACACGCCTCCTCCCGAGTCCATAGC
AACCCCATACGAACGCCTTCCGCCCGCCAATGCTTACTTGGCAAACAGGC
AGGAGGGCATGGTTAACATCACCAGCCCCCGCTGCATGACGGAGGGCTGC
GACCGGCAGCCCCTGTTCGGAAACATCGGTGACAACGGGGGCAGCGCTGG
CGGCTTCCGCCCCCGTCGGGCCAAGTACTGCCGCCTGCACAAGCCGGAGG
GGATGGTGAACGTCAAGGTGAGCCGCCGCTGCTACACTAGCATATATATA
TGTACTCACGTTGTGCTTGCCGTAGTCCCGAGACCATTGACCACGAGCCT
TGATCGAGACGGAACACACTACAGTAGTACATTAGAGATGAGATTGGCAA
CCGTCTGCCGGCACGATCGGTGGTCCGGGTTTTCTCCGGTCTTTCCCTGG
CGGAGTGTTAGCGGTTTTCGCCGTGTTTGAAAATGCGGTGTTGTTTGGCC
GGGACCGCTTTTCGGTCGGTTTAAATGTGCCCAGAAGGCGATGTCATACG
TTAATGGTACTTAAGGCCAAGCCCGACTGCTATATCGAGGGGCAAATACA
CGCAAAATGAAATTGGGAGGGGGGCAGCAGCCCTCCGGCATCGGTTATGC
ATTACTCGTATCACCCGGTTCGCCGGCAGCTACAGGTTGCAAACCAGTGG
CGGTTCACAAGTGTTGTGTGACTCTTGCTTCTATGATCTGTGCGTGGTGG
AGGATTGTACCACGCATGTTAGCCGCTGTACGGGGCCAGTGGGGGGCGCC
TAGGCCCATGACAGGCCATTGAATACGAATACACAGGGGAATACGCCATA
CCAGTGACCTTCCGTTGCCAGTGAGGGCCACCTGGGCTCTCACCGCCCCG
GCAGCCATGGCATGTTCTCCATGCTCCGCTAGCGCTAGTAGGTGTGGTAG
GAGGGGATAGTGAATGTCAAGGTGTGGGGAGATGGGGGAGGATACGCGGC
CAGGAGCGTCAGATGCCCCCCCCCCGCCAGCTGTAAGTCATAGAGTACTT
CGAAGTGCTCGGAAGAACTCCTGCACGCAGTGTTTGTGCACTTGTACTAC
TACTGTAGTACAGCACACTGGGTGGATGTCTCACACCCAACAGTGCTTGC
CGTACACCTGCAAGTCCTGATACCATTGACCACTATAGCGCCTCGACCGA
GACGGGGCTGTCGTGCCGAGTATGTTTCTGTACTGCCAGCTAAGTTCGGC
GCTACTACTCCTGCCATGTGTACATAGTGCACTATGTACTGTACAGTACT
TACTTGTCAGCACTACAGTTAATACTCCCCTCCCCTGGCGAGCTAAGGAA
GGGCCACTGTTGAGGTCTTTTGTGACGTGGCCTGCACCTCGCCCTGCGTC
GTTCCTGTTAATACTGTTCGTACTGCATTGCGTTGCTTTGCACATTTGTA
GTTTACAATGTGCGACATTACAATGTGCGACAACGGTTCGGGAATGGTTT
GCTCCGTTCTGGGACAGCTACTGCAAGGGGCACTCGATCAATTATATCTA
TTGTGGAACAAAAAATCAGAGGCACATCAGCGGTTTGCGCGGATGCAGTT
TTGTTCGGCGCACTTTGAGGGGCCTCTTCTTGCGTTTTTTTAAACACATG
CCCGGTCAGTTTTGTGCGCCAATGAATAATCGGCCGCCTCCACATTTTTG
CGATGCAGTTTTGTGTGGCCCTGCCTGCCCATTTTTTTCTTGTACGGGGC
GTCGAGGAGTTGAATGGTGGACTCCACGGGGCTGGGGAGGTGCCAACAAT
CGGCGCGGACAAACTTCGCCCCACATGGGGAATGGACGGCATCAAACCCA
TCCTCCTGCAGTCGTTGCACTGTCGGGAGGATGCACCGGCCGACCGCATC
GTGTCCTGGTGTGACATGATACTATATTGTCCCTTGACGTCCTTCCCCGC
CCCGCCTGGCGCCGCACTGCCCTGGGAACAGATTGCGCTCTGCCAGCACG
ACGCCTGCCCCAAGATCTGCCAATTTGGCCGCCCGGGGGACCACCGCCCC
TCGTTCTGCGCCTCCCACAAGCAGGAGGGCATGGTGGACCTCAAGAGCCC
ACGCTGCCAGGAGGACTCCTGCTCCAAGCACCCCAGCTTCGGCTTCCAGA
GCGACCGCCGGCCCCTCTTCTGCTGCGAGCACCAGGTGACAATCACTAAT
ACTTCGAAGTACAAGAACACTCAATAATTCTCAAAAATGGCGCAACAAAT
TTCCCCTGGCGAGCTGTAAGGAAGGGCCACTGCTGAGGCTCTTGGTCTAC
GCCACTAGACTAAGTAGTGACGTGGCCCACACCTCGCCCCATGTTGTTCC
TGTTCATGCTAATACGGAGACAGCCAATCTCACACACTTGCAATTGTACC
TCCTTACAATGTATATGAATCACCAGGTGGCGGGCATGGTCAACGTGCGC
AAGCTGGGGCCCGTGAAGAGGAGTCGGAACCCGCGGCGGCTGGAGGTGTC
CGTGGCGGCGGCGCCTGGGCCCGACTCGGCGGCTCCTCCGCTGGAAACTC
AGGCCGGCAGCACCAGTGGGCCTGAGCCTGACCCTGAGCTTCAAGTTCAG
TCCGCGGCCGAACTGGTCTGAGTACCATAATCGTCAGAGAGATCTTGCCC
CCCCATGCCAATTTTCGGGATAACTTTTTCGCCGAATACTGGTCGGATTC
GCGCAGGAAAACTCGGAAAATCTCCCTCCGGACCTGGGGAAACTTTTTCG
AGGGCTTTCGGGACAGCCCAGGACCTTGAAGTGCCGGCTAGAAGTATTCC
CCCGAAAATTGTCCCTTGGGGGCAAAATCTCTCGGACGATTACGGTATGA
TCGTCCGACTCCGCCATGGACTGAACCAACTGTGGTCAACTTTGGAATTC
AACTGTACAGTATTAGCAGGAACAACACGGGGCGAGGTGCGGGCCACTTC
AGTAGAGACCTCAGCAGCGGTCCTTCCTTACAGCTCGCAGGGGGA
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig87:289648..294342-

>mRNA_S-ischiensis_contig87.20255.1 ID=mRNA_S-ischiensis_contig87.20255.1|Name=mRNA_S-ischiensis_contig87.20255.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1344bp|location=Sequence derived from alignment at S-ischiensis_contig87:289648..294342- (Schizocladia ischiensis KU_0333)
ATGCTGAACGTGAAGAGCCGGCGCTGCAGGCGGGAGGGGTGCCCCAAGCA
GCCCCTGTTTGGGAAGGTGGGGGATCGCCGCGGGAGCTACTGCAAGGTAC
ACAGATGCTGAACGTGAAGAGCCGGCGCTGCAGGCGGGAGGGGTGCCCCA
AGCAGCCCCTGTTTGGGAAGGTGGGGGATCGCCGCGGGAGCTACTGCAAG
GTACACAGGCAGGAGGGCATGGTTAACATCACCAGCCCCCGCTGCATGAC
GGAGGGCTGCGACCGGCAGCCCCTGTTCGGAAACATCGGTGACAACGGGG
GCAGCGCTGGCGGCTTCCGCCCCCGTCGGGCCAAGTACTGCCGCCTGCAC
AAGCCGGAGGGGATGGTGAACGTCAAGGCAGGAGGGCATGGTTAACATCA
CCAGCCCCCGCTGCATGACGGAGGGCTGCGACCGGCAGCCCCTGTTCGGA
AACATCGGTGACAACGGGGGCAGCGCTGGCGGCTTCCGCCCCCGTCGGGC
CAAGTACTGCCGCCTGCACAAGCCGGAGGGGATGGTGAACGTCAAGATTG
CGCTCTGCCAGCACGACGCCTGCCCCAAGATCTGCCAATTTGGCCGCCCG
GGGGACCACCGCCCCTCGTTCTGCGCCTCCCACAAGCAGGAGGGCATGGT
GGACCTCAAGAGCCCACGCTGCCAGGAGGACTCCTGCTCCAAGCACCCCA
GCTTCGGCTTCCAGAGCGACCGCCGGCCCCTCTTCTGCTGCGAGCACCAG
ATTGCGCTCTGCCAGCACGACGCCTGCCCCAAGATCTGCCAATTTGGCCG
CCCGGGGGACCACCGCCCCTCGTTCTGCGCCTCCCACAAGCAGGAGGGCA
TGGTGGACCTCAAGAGCCCACGCTGCCAGGAGGACTCCTGCTCCAAGCAC
CCCAGCTTCGGCTTCCAGAGCGACCGCCGGCCCCTCTTCTGCTGCGAGCA
CCAGGTGGCGGGCATGGTCAACGTGCGCAAGCTGGGGCCCGTGAAGAGGA
GTCGGAACCCGCGGCGGCTGGAGGTGTCCGTGGCGGCGGCGCCTGGGCCC
GACTCGGCGGCTCCTCCGCTGGAAACTCAGGCCGGCAGCACCAGTGGGCC
TGAGCCTGACCCTGAGCTTCAAGTTCAGTCCGCGGCCGAACTGGTCTGAG
TGGCGGGCATGGTCAACGTGCGCAAGCTGGGGCCCGTGAAGAGGAGTCGG
AACCCGCGGCGGCTGGAGGTGTCCGTGGCGGCGGCGCCTGGGCCCGACTC
GGCGGCTCCTCCGCTGGAAACTCAGGCCGGCAGCACCAGTGGGCCTGAGC
CTGACCCTGAGCTTCAAGTTCAGTCCGCGGCCGAACTGGTCTGA
back to top