mRNA_S-ischiensis_contig87.20247.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20247.1
Unique NamemRNA_S-ischiensis_contig87.20247.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:243561..245060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size543
Cds size543
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20247.1prot_S-ischiensis_contig87.20247.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 243561..245060 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817349.1877072-CDS-S-ischiensis_contig87:243560..2436731622817349.1877072-CDS-S-ischiensis_contig87:243560..243673Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 243561..243673 +
1695741047.0318837-CDS-S-ischiensis_contig87:243560..2436731695741047.0318837-CDS-S-ischiensis_contig87:243560..243673Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 243561..243673 +
1622817349.2016916-CDS-S-ischiensis_contig87:244310..2444041622817349.2016916-CDS-S-ischiensis_contig87:244310..244404Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 244311..244404 +
1695741047.0457208-CDS-S-ischiensis_contig87:244310..2444041695741047.0457208-CDS-S-ischiensis_contig87:244310..244404Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 244311..244404 +
1622817349.2122865-CDS-S-ischiensis_contig87:244724..2450601622817349.2122865-CDS-S-ischiensis_contig87:244724..245060Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 244725..245060 +
1695741047.0643048-CDS-S-ischiensis_contig87:244724..2450601695741047.0643048-CDS-S-ischiensis_contig87:244724..245060Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 244725..245060 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20247.1

>prot_S-ischiensis_contig87.20247.1 ID=prot_S-ischiensis_contig87.20247.1|Name=mRNA_S-ischiensis_contig87.20247.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=181bp
VGGGVGAGIGAQSISRRRAALTVSSSGSPSLLRWPASRELDRSYVHRSGV
AFVRVAPKGLVYMDNRHHQVSPASATTLAAGSAGGTAPGGGSAGGSGGGG
GGYGGGGGGSFVGGYADSFSSPRFKLSLRLLQDVRETVAAAEFAHQLALE
VVYKVLAMVGHSAPAPAAAAAAAAAPTTGMA
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mRNA from alignment at S-ischiensis_contig87:243561..245060+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20247.1 ID=mRNA_S-ischiensis_contig87.20247.1|Name=mRNA_S-ischiensis_contig87.20247.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1500bp|location=Sequence derived from alignment at S-ischiensis_contig87:243561..245060+ (Schizocladia ischiensis KU_0333)
GTCGGTGGTGGTGTTGGTGCGGGCATTGGTGCACAATCGATCAGTCGAAG
AAGGGCGGCTCTCACGGTGTCCTCGTCAGGGTCGCCATCGTTGTTGAGGT
GGCCAGCCAGCAGGTGTGTGGTGGGGTGTTGTGTGATGTGATGTGATGTG
ATGTGATGTGCCGTGATGTGGTGTGATGTGGTGTTATGTGGTGTGATATT
GTGTGATGTGGTGTGATGTGATGTGGTGTGGTGTTGGGTTTGCGATTTGA
TGCGATGTGATGTGGTGTGGTGTAGTGTGGTGTGATGTGTTGTGACGTGA
TGTTGATGCGATACATGCATAGTACTGAAGTTTTGCTACTTCCTCAAGGG
CATCAGCACTTGCACTTTAGGGGGCAGCCTGACACGTCTGTCTGTCTTCT
CTCCAGGTATCTGTATGACTGTCTGTCTGTATGCATGAGTCTGTCTGTCT
GTCCGTCTGTTGGCGGAACCACCCTGGCGCCGAGCTTCCGATCGCCTCCG
AGTGGCACTCGCCATCGTTCGCAGCAATGGCATGGTCCTTGTCGTGATTG
CAAGCAAGCAATGCTTTGTCGGCCACCTGACGAGTCGCGCTCTGCGCCGA
CCCTTGCCTGCTCTTCTCTACTGTACTGTACTGTACTGTACTATACTGTA
CTGCACTGCACTGCACTGCACTGTACTGCACTGTACTGTGCTGTACCGCA
CTCTGCTGTACTAAACTGTACCGTGCTGCACCGTACTGCACTTGTACTAG
GGAGCTGGACCGGTCGTACGTGCACCGCTCCGGCGTAGCGTTTGTGCGGG
TGGCGCCCAAGGGCTTGGTGTACATGGACAACCGCCACCACCAGGTATGG
CACTCCGGCTCTTCACTGTACTTTGAAGTAAATATCATGATGGCGTAGTT
AACATTATACTTCCAAGTATGTGTACTACGTTGCGCTTGCCGCAGCCCCA
AATATTTAGACCACTACCTGTAGCGCCTCGACTAACTATATGCAGTGCTT
CAGGGGCGACCCATTGGCGTGCCAGGGGGGGCAGCCCAAGTGTACAGTAC
CAGCCTGGGTGCACAGTACCCCGTAAGTGACTCGGACGAATCGAGCTGTC
AGCCCCCCCCCCCCACCCACCCACCCCGTTGTCCTTCTCCTATGAACCAA
TGCTTGGTGCGCAGGTGTCGCCTGCCAGCGCAACCACGCTGGCCGCGGGG
AGCGCCGGGGGCACCGCCCCTGGAGGGGGCAGTGCGGGCGGCAGCGGAGG
CGGCGGCGGCGGCTACGGCGGCGGCGGCGGCGGCAGTTTTGTGGGCGGTT
ACGCAGACTCCTTCTCGTCGCCACGCTTCAAACTGTCCCTCCGCCTCCTG
CAGGACGTACGGGAGACGGTGGCCGCCGCCGAGTTTGCCCACCAGCTGGC
CCTGGAGGTGGTCTACAAGGTGCTAGCAATGGTGGGACACAGCGCCCCCG
CCCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCCCAACCACCGGCATGGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig87:243561..245060+

>mRNA_S-ischiensis_contig87.20247.1 ID=mRNA_S-ischiensis_contig87.20247.1|Name=mRNA_S-ischiensis_contig87.20247.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1086bp|location=Sequence derived from alignment at S-ischiensis_contig87:243561..245060+ (Schizocladia ischiensis KU_0333)
GTCGGTGGTGGTGTTGGTGCGGGCATTGGTGCACAATCGATCAGTCGAAG
AAGGGCGGCTCTCACGGTGTCCTCGTCAGGGTCGCCATCGTTGTTGAGGT
GGCCAGCCAGCAGGTCGGTGGTGGTGTTGGTGCGGGCATTGGTGCACAAT
CGATCAGTCGAAGAAGGGCGGCTCTCACGGTGTCCTCGTCAGGGTCGCCA
TCGTTGTTGAGGTGGCCAGCCAGCAGGGAGCTGGACCGGTCGTACGTGCA
CCGCTCCGGCGTAGCGTTTGTGCGGGTGGCGCCCAAGGGCTTGGTGTACA
TGGACAACCGCCACCACCAGGGAGCTGGACCGGTCGTACGTGCACCGCTC
CGGCGTAGCGTTTGTGCGGGTGGCGCCCAAGGGCTTGGTGTACATGGACA
ACCGCCACCACCAGGTGTCGCCTGCCAGCGCAACCACGCTGGCCGCGGGG
AGCGCCGGGGGCACCGCCCCTGGAGGGGGCAGTGCGGGCGGCAGCGGAGG
CGGCGGCGGCGGCTACGGCGGCGGCGGCGGCGGCAGTTTTGTGGGCGGTT
ACGCAGACTCCTTCTCGTCGCCACGCTTCAAACTGTCCCTCCGCCTCCTG
CAGGACGTACGGGAGACGGTGGCCGCCGCCGAGTTTGCCCACCAGCTGGC
CCTGGAGGTGGTCTACAAGGTGCTAGCAATGGTGGGACACAGCGCCCCCG
CCCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCCCAACCACCGGCATGGCC
GTGTCGCCTGCCAGCGCAACCACGCTGGCCGCGGGGAGCGCCGGGGGCAC
CGCCCCTGGAGGGGGCAGTGCGGGCGGCAGCGGAGGCGGCGGCGGCGGCT
ACGGCGGCGGCGGCGGCGGCAGTTTTGTGGGCGGTTACGCAGACTCCTTC
TCGTCGCCACGCTTCAAACTGTCCCTCCGCCTCCTGCAGGACGTACGGGA
GACGGTGGCCGCCGCCGAGTTTGCCCACCAGCTGGCCCTGGAGGTGGTCT
ACAAGGTGCTAGCAATGGTGGGACACAGCGCCCCCGCCCCCGCCGCCGCC
GCCGCCGCCGCCGCCGCCCCAACCACCGGCATGGCC
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