mRNA_S-ischiensis_contig87.20244.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20244.1
Unique NamemRNA_S-ischiensis_contig87.20244.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:224762..227389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size358
Cds size357
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20244.1prot_S-ischiensis_contig87.20244.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 224762..227388 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817349.0860124-CDS-S-ischiensis_contig87:224761..2249371622817349.0860124-CDS-S-ischiensis_contig87:224761..224937Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 224762..224937 +
1695741046.9477723-CDS-S-ischiensis_contig87:224761..2249371695741046.9477723-CDS-S-ischiensis_contig87:224761..224937Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 224762..224937 +
1622817349.0971956-CDS-S-ischiensis_contig87:225955..2260441622817349.0971956-CDS-S-ischiensis_contig87:225955..226044Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 225956..226044 +
1695741046.9604037-CDS-S-ischiensis_contig87:225955..2260441695741046.9604037-CDS-S-ischiensis_contig87:225955..226044Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 225956..226044 +
1622817349.1073864-CDS-S-ischiensis_contig87:227296..2273881622817349.1073864-CDS-S-ischiensis_contig87:227296..227388Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 227297..227388 +
1695741046.9728758-CDS-S-ischiensis_contig87:227296..2273881695741046.9728758-CDS-S-ischiensis_contig87:227296..227388Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 227297..227388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20244.1

>prot_S-ischiensis_contig87.20244.1 ID=prot_S-ischiensis_contig87.20244.1|Name=mRNA_S-ischiensis_contig87.20244.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=119bp
TTGVRARDIAAGAGLSTLEIGSPWGSAPQLLPDGDAAVVGSAQRLSDAGV
QGGSGSLDRHLHRPYPDLDDQIGAPEQPSLLLGSYSSAGGWGGAHLSDTP
TSSVAIPGANATFESSGRS
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mRNA from alignment at S-ischiensis_contig87:224762..227389+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20244.1 ID=mRNA_S-ischiensis_contig87.20244.1|Name=mRNA_S-ischiensis_contig87.20244.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2628bp|location=Sequence derived from alignment at S-ischiensis_contig87:224762..227389+ (Schizocladia ischiensis KU_0333)
ACGACAGGCGTGCGGGCGAGAGACATTGCTGCGGGTGCAGGGTTGTCGAC
GCTGGAGATTGGCAGCCCGTGGGGGAGCGCCCCGCAACTGTTGCCAGATG
GGGACGCGGCGGTGGTGGGCAGTGCACAGAGGCTATCGGATGCGGGCGTG
CAGGGCGGCAGCGGCAGCCTCGACAGGTGTTTTGATGTTATGCCTGGAAG
TAGGATATGGTTTGTGCACTAGCTCCAATATACTTCGAAGTACAAGTACT
GCAGTTTGGCATCCCATCGCGTCACGTCACATCACACCACATTTGATGTC
AAACTACGGTGCATTGAAGCACACATCAGCTCAGATCACATCCCATCCCA
TCACATCACATCGCATCACATCGCATCGCATGTGATATCAAAGTACGGTG
CATTGAGGCACACATGAGATCACACCACGTCGCATCGCGTCGGATCACAT
GACATAACACCTGATGTCGAACTACAATACAGTACCTATGGTGCATTGAA
GCACACATCACATCACGCCACGTCACGATCCAGTGCTACATACTATGTAC
GTACTGTAGTACTTGGAAATACTAGGTCGCCACCTGACATTGTGCAGGGG
GAAGCATTGAAATGGCCCAAAAGGGGGAGTCCTGTGGGTGTCGAAACAAT
TGACTCACCAAGATCTCCGTTCAAATGCAACCGAACTACGGCAAACGCAT
TGCTGTACTGTAGTACCCGTACTAGTACCTGTACATGGTGCTTCCGCAAG
CATATTCAAGGATGGGGCCTCAACTACAGTATGTACGCACCCAATCTTGG
CATGTTTTATTGCGTTCTTAGGTTTTCCTTCGAAGGGTACTTGTCTTCGA
AAGGCAATCCTAGAGGCCTGCTATTTCTGATCAGCTCTTTCTTTGTTGAA
GCGTATCAAACGCAACAGAGCGATCCAGTAATATTGCCAATTGAGGCCTC
TGATGAGACAGGAAGTTTTTTTCCTCCGGCCGTACCACGCTCGCCTTCAT
GCACACTCACACGCGCACGCACACGCGCACGCACACACACACATGCACAC
CACACACAACACATGCGCACACACGCACACACATACTCGTGCACACAGCT
GTGGCACATGCACGCGCACATGCACTCACACGCACGCACGGACACACGTT
TACATGCACCCACGCACGCGCACACCACATCCACGCACACACAGGCACCT
CCACCGGCCTTACCCTGACCTGGACGACCAGATCGGTGCCCCGGAGCAGC
CTTCGCTCCTCCTGGGCAGCTACAGCTCGGCAGGTAGGCAGCCGTCCCTC
CTCCTTGGCAGCTGCACGCATCTACAGCTCGGCAGATTACAGTAGGTCTT
ATGCACCGCTTTGAGCTTCAGCCATCACTCGTCAGCAGTTACAGCGGGAG
GTAGGCATATACGAGTATGCACTGGCAACAGGTGCTTCGAGCAGCTGTCA
CTCCTCCTTCGCAGCGACAGCTCAGCAGGCACTGTAGGGATGCACCAGTC
GTATAATCGTATGCGGTAGGCATGACAGGTCTACCCGCATACTTTGAAGC
CACTTTTAAGGTATCAAGGAGCAGCCCTCAACCCCTCCTCGGCAGCTTAC
AGCTCTGTAGCTACAGCACTGTAGGGCTGCTCTCCGAATAGGTGCTTGGA
AGTATGACGGGTTTGCTACAATGCACTTCAAAGCGTTACGGGAGCAGCCG
CCCCTCCTCATGGGCACCTTGCAGCTTGGCAGGTACTGTAGGGATGGCGC
CCATACCGTAATCGTCGGAGAGATTTCGCCCCCACGGGGCAATTTTCGGG
TGAATATTTCTAACCGGGAAGGTCCTCAATTGTCCCGAAAACTCCCCAAA
AAGTTCTGCCAGGTCCTGAGGGAGATTTTCCGAGTTTTCCTGCACGAGTC
CGACCAGTAATCGGCGAGAAAAGTTCTCCCGAAAATTGGCATGGGGGGGC
AAGATCTCTCCGACGATTACGGTAGTACAGCACTCGAGTACGTGCTTATA
AGTAAGTATGTCATCACAGGTCTGCCAGCACTTGCTTCCCAAGTACTTCG
AAGTACTACGGAGCAGGCACCACTCCTCCTCGGCAGCTGCAGCTCCGTCG
GTATCGTTTCCGCTCATGCTTAAAAAGTGCAGCATCTATAGGACAAACAA
CAGCTGGACAGGAAGAAGCGGGTTTGTGGCTGAAGCCGAACTTTTCAGAA
GAGAACCCTCAAGGTCAAGTTGATTTTGAGGTTGAAGCTGAGTTCATACA
CTCGGCACATCACAATTTGACTTCAACTTGGATGCTTTCTGGAATTGAAC
TGACGGCCCCACCCGCCCTTTTTTGTTTTCAATTCTTTATGTGATCGCCA
CTAATACGAGAACACTCAATTCTTAAATGAGACAGCCACCAATACGAGAA
CACTCAATCTCACACACGTGCGATTGTACCTCATTACAATTGATATGAAC
CATGCCCCGCCCACCCTCCGGCGCCACCGTACTCCACTGTCTGCACCCCC
CTGCCTGTGCACAACGACGCCCACGACACACAAAGGGGGATGGGGGGGCG
CCCACCTCTCCGACACTCCGACGTCCTCGGTGGCCATACCCGGTGCCAAC
GCCACCTTCGAAAGCAGTGGCAGAAGCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig87:224762..227389+

>mRNA_S-ischiensis_contig87.20244.1 ID=mRNA_S-ischiensis_contig87.20244.1|Name=mRNA_S-ischiensis_contig87.20244.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=714bp|location=Sequence derived from alignment at S-ischiensis_contig87:224762..227389+ (Schizocladia ischiensis KU_0333)
ACGACAGGCGTGCGGGCGAGAGACATTGCTGCGGGTGCAGGGTTGTCGAC
GCTGGAGATTGGCAGCCCGTGGGGGAGCGCCCCGCAACTGTTGCCAGATG
GGGACGCGGCGGTGGTGGGCAGTGCACAGAGGCTATCGGATGCGGGCGTG
CAGGGCGGCAGCGGCAGCCTCGACAGACGACAGGCGTGCGGGCGAGAGAC
ATTGCTGCGGGTGCAGGGTTGTCGACGCTGGAGATTGGCAGCCCGTGGGG
GAGCGCCCCGCAACTGTTGCCAGATGGGGACGCGGCGGTGGTGGGCAGTG
CACAGAGGCTATCGGATGCGGGCGTGCAGGGCGGCAGCGGCAGCCTCGAC
AGGCACCTCCACCGGCCTTACCCTGACCTGGACGACCAGATCGGTGCCCC
GGAGCAGCCTTCGCTCCTCCTGGGCAGCTACAGCTCGGCAGGCACCTCCA
CCGGCCTTACCCTGACCTGGACGACCAGATCGGTGCCCCGGAGCAGCCTT
CGCTCCTCCTGGGCAGCTACAGCTCGGCAGGGGGATGGGGGGGCGCCCAC
CTCTCCGACACTCCGACGTCCTCGGTGGCCATACCCGGTGCCAACGCCAC
CTTCGAAAGCAGTGGCAGAAGCGGGGATGGGGGGGCGCCCACCTCTCCGA
CACTCCGACGTCCTCGGTGGCCATACCCGGTGCCAACGCCACCTTCGAAA
GCAGTGGCAGAAGC
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