mRNA_S-ischiensis_contig87.20238.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig87.20238.1 vs. uniprot
Match: Q54UX5_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54UX5_DICDI) HSP 1 Score: 101 bits (251), Expect = 1.120e-18 Identity = 74/273 (27.11%), Postives = 134/273 (49.08%), Query Frame = 1
Query: 226 MVMDKTNLGDGFSVSSSKGTVQKALHIDMSAEDALHVEHQVEGSGQFTLIKDVSDMRKAVGVSAKASLKYDMFSGEAGGSFSAQESSSETSVKILYRQAVTLKTVAVDETASKHTKANPELVKENVSVSEVLDKCGGYYVSKIFYGALLEIEVTMKMESILDKQDIEAKAEGKIDLIAFSLKAAGDVSVEKGSQQSSKDIKINVRSAGDASVFTMPHTTVEEAMAIIKAFNPKPKDETLAVVGFQVRSLPINHFKNLNASDIQLQQYEANLSE 1044
+++ + +LG GFSV + +K+ + ED V + S + TLI D + A+ VS + SL Y + SG+ G + SS+ + L+ + K V + TA K EL N ++ + G +Y+SKI YGA+L++++T++ +++ + EG +D+ S+K G + E GS +S ++ +V +G + + T++EA +I AF + +E L V ++ +P N +L IQ Y+ LS+
Sbjct: 14 LLVTENDLGRGFSVDDNGANAKKSNVYICTKEDMTTV-RSITDSNKLTLINDQESLTSALNVSGELSLSYGLMSGKIMGEYLDTSSSNSNKLTFLFTRRKVTKIVELKSTA----KTTKELQAIN-NIDSLKSIYGLFYISKIEYGAILDLKITIESSDSKTMNELKGELEGNVDINKLSIKVKGKMDKEDGSSKSKINVTSSVSMSGCKDLKKVHIQTLDEANQLIGAF--EVDEEALVPVRMEISQIPANLTPSLTIDPIQFNHYKKKLSD 278
BLAST of mRNA_S-ischiensis_contig87.20238.1 vs. uniprot
Match: Q54UD6_DICDI (Lectin_legB domain-containing protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54UD6_DICDI) HSP 1 Score: 81.3 bits (199), Expect = 6.790e-12 Identity = 66/275 (24.00%), Postives = 123/275 (44.73%), Query Frame = 1
Query: 226 MVMDKTNLGDGFSVSSSKGTVQKALHIDMSAEDALHVEHQVEGSGQFTLIKDVSDMRKAVGVSAKASLKYDMFSGEAGGSFSAQESSSETSVKILYRQAVTLKTVAVDETASKHTKANPELVKENVSVSEVLDKC----GGYYVSKIFYGALLEIEVTMKMESILDKQDIEAKAEGKIDLIAFSLKAAGDVSVEKGSQQSSKDIKINVRSAGDASVFTMPHTTVEEAMAIIKAFNPKPKDETLAVVGFQVRSLPINHFKNLNASDIQLQQYEANL 1038
+++ + +LG GF++ + + K + + ++ + S +LI+D ++ A+ V + SL Y + SG+ G++ +SS + LY + + K V +D + V E++S +D G YY+SKI YGA+L++++T++ ++I+ + G + + A SL G + E S S + +V G + +EAM +I F P E L V +V +P L+ + L YE L
Sbjct: 14 LLITENDLGRGFNIENGENA--KKGQVFICEKEKIKSTFPSTDSNNLSLIRDNESLKAALDVGGELSLSYGLISGKVMGNYIDTNTSSNERMTFLYTRRIVHKIVELDYKSE---------VAEDISKITTIDALRSFYGLYYISKIEYGAILDLKITLESSDKKKMENIKGELSGSVTIGALSLSVKGHIDKEDSSSTSRLKVTSSVLLGGSVLIDKTDVKNFDEAMDVINKFKVDP--ERLVPVRMEVSKIPPRVTPILSIDPLTLNHYENKL 275
BLAST of mRNA_S-ischiensis_contig87.20238.1 vs. uniprot
Match: Q54V69_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54V69_DICDI) HSP 1 Score: 80.5 bits (197), Expect = 1.160e-11 Identity = 63/272 (23.16%), Postives = 127/272 (46.69%), Query Frame = 1
Query: 226 MVMDKTNLGDGFSVSSSKGTVQKALHIDMSAEDALHVEHQVEGSGQFTLIKDVSDMRKAVGVSAKASLKYDMFSGEAGGSFSAQESSSETSVKILYRQAVTLKTVAVDETASKHTKANPELVKENVSVSEVLDKCGGYYVSKIFYGALLEIEVTMKMESILDKQDIEAKAEGKIDLIAFSLKAAGDVSVEKGSQQSSKDIKINVRSAGDASVFTMPHTTVEEAMAIIKAFNPKPKDETLAVVGFQVRSLPINHFKNLNASDIQLQQYEANLS 1041
+++ + +LG GFS+ + G +K+ + + ++ + S TLI+D ++ A+ V + SL Y + SG+ G++ +SS + LY + + K V +D H K + ++ K + ++ + G +Y+SKI YGA+L++ +T++ I+ + G I + A SL + E+ S S + +V G + ++AM +I +F K + L V ++ +P L+ + L Y++ +S
Sbjct: 12 LLITENDLGRGFSIDDN-GNAKKS-EVFICEKEYIKSSFPKTDSNNLTLIRDSESLKSALDVGGEISLSYGLISGKVMGNYIDTNTSSNERMTFLYTRRIVDKIVELDY----HAKPSQDISKVD-NIDSLKSTYGLFYISKIEYGAILDLRITLESSDKGTMNKIKGELSGSISIGALSLSVKAHIDKEESSSSSKLKVTSSVLMGGCKPIDKTDVKNFDDAMKVIDSF--KVDQDRLIPVRMEISPIPTRATLLLSIDPLSLNHYKSKVS 274 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig87.20238.1 >prot_S-ischiensis_contig87.20238.1 ID=prot_S-ischiensis_contig87.20238.1|Name=mRNA_S-ischiensis_contig87.20238.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=614bp MGSSEIYYPRLLGEKMVMDKTNLGDGFSVSSSKGTVQKALHIDMSAEDALback to top mRNA from alignment at S-ischiensis_contig87:163221..187893+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig87.20238.1 ID=mRNA_S-ischiensis_contig87.20238.1|Name=mRNA_S-ischiensis_contig87.20238.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=24673bp|location=Sequence derived from alignment at S-ischiensis_contig87:163221..187893+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig87:163221..187893+ >mRNA_S-ischiensis_contig87.20238.1 ID=mRNA_S-ischiensis_contig87.20238.1|Name=mRNA_S-ischiensis_contig87.20238.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=3684bp|location=Sequence derived from alignment at S-ischiensis_contig87:163221..187893+ (Schizocladia ischiensis KU_0333)back to top |