mRNA_S-ischiensis_contig87.20235.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20235.1
Unique NamemRNA_S-ischiensis_contig87.20235.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:134087..135505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size286
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817349.0389137-CDS-S-ischiensis_contig87:134086..1341681622817349.0389137-CDS-S-ischiensis_contig87:134086..134168Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 134087..134168 -
1695741046.923877-CDS-S-ischiensis_contig87:134086..1341681695741046.923877-CDS-S-ischiensis_contig87:134086..134168Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 134087..134168 -
1622817349.0500152-CDS-S-ischiensis_contig87:135302..1355051622817349.0500152-CDS-S-ischiensis_contig87:135302..135505Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 135303..135505 -
1695741046.935672-CDS-S-ischiensis_contig87:135302..1355051695741046.935672-CDS-S-ischiensis_contig87:135302..135505Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 135303..135505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20235.1prot_S-ischiensis_contig87.20235.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 134087..135505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20235.1

>prot_S-ischiensis_contig87.20235.1 ID=prot_S-ischiensis_contig87.20235.1|Name=mRNA_S-ischiensis_contig87.20235.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=95bp
AAAARGRPGPRSCRVMSSRIGATYEWGVGESERHKLERIWELQAGGEGRR
FERAEAPVPPSEFHRAVRDQSVHHALYKEQYTEADEGERDWDAQG
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mRNA from alignment at S-ischiensis_contig87:134087..135505-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20235.1 ID=mRNA_S-ischiensis_contig87.20235.1|Name=mRNA_S-ischiensis_contig87.20235.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1419bp|location=Sequence derived from alignment at S-ischiensis_contig87:134087..135505- (Schizocladia ischiensis KU_0333)
GCTGCAGCGGCACGGGGGCGGCCAGGGCCCCGCTCATGCCGAGTCATGTC
GTCTCGTATTGGCGCGACGTACGAGTGGGGCGTGGGCGAGTCTGAAAGGC
ACAAGCTGGAGCGTATCTGGGAGCTGCAGGCAGGGGGGGAGGGGCGACGC
TTTGAGCGGGCAGAGGCGCCCGTTCCACCCAGCGAGTTCCATCGTGCCGT
CAGGTGGGATGCCGTGCTGTGACGCCGGGTCTCGCGGTATAATAGGCTGT
ACTGTATTCAGCCATCAAGCCCTTGGAGGCCCAGCCTGTATCGAACTGTA
CAAGCAATGCAAGCACTTCCGAGCAGCGTGTCGGTGTTTGGGGGCGCTGT
AATAGTCCGCAGGCTGCTGCGTATGTATGACATATGTGTGCTGCAGGTTC
GATCCGAGAATCGGGTCTCTTCCGGTGCCCTGAGCGTAAGGGGGCCCCAA
GGATGAAGTGTGCCGCGGGCGCGTAATGTTAGTTGCTGTAAGTTGAGAGG
AAATCCACAAGAGTGGCATTGCCCCCAAGATAGTACAGTAGTAGCGCGTA
CACTGGGTGCTATGGCGGGCGATTCGGTGTGGCGGCTGAATGGGTCGAAA
TTCACTCGAGTTTCCGGCCGGCTCCCAGCCGTTCAGCTTGAAACGGGGTT
TTACGAAGTACACTTGGTAGTATAATACTATCGGCAGCTACTGTACATCC
AAGCACCATATGTACTACTAGTAGTACCTCGTGAGCCTCGTGTCATGAGC
AGAAACCTAACGGTCACCCCATGGTGCCCTCCGCCCTCCGTGCCTACCTT
ACCTGCCTCGCATGGACCAAGTGGCATCCGTGACGAAACCCCATGTACAA
CACGATGAGTATCGCGCTCTCTTGTGTAGCAATTGCACCCCTACTATAGT
ATTGTTTGGAGAAAGACTTTGCCCGGCACCTACGTCATTCGCACAGGGCA
GTAGCCTATTCGCCTTTCTCTCACTGCGCAGCAGGCGCGTCCGCGTGATG
TAAACGATGAGTACTACACCACTTCACCTACTTACCCTCTTTGGCCCTAC
TGTGCTGTCCAGCACTACTACAGTATATAGTACTTACATAGCACTTCCCA
ACGCCATCCCCCTTCAGCCTCGACACTAAATTCTTAATTGGGATAACCAT
TAACACGAGAACACCCAATCTCTCACACACGTGCTATTGTGCCTCGTTGC
AATTTATACACGCGCGCGACTGTACCTCGTTACAATTCATATTAGTCACC
CCCTTAAGCCTCGGTCGGCATCGGACAGAATCAAACCTACCCCCCCTCGG
CACACACCGCCCTCATGCCCTCCACGAAACCCCGCAGGGACCAGTCCGTC
CACCACGCCCTGTACAAGGAGCAGTACACAGAGGCTGACGAGGGGGAGCG
GGACTGGGACGCTCAGGGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig87:134087..135505-

>mRNA_S-ischiensis_contig87.20235.1 ID=mRNA_S-ischiensis_contig87.20235.1|Name=mRNA_S-ischiensis_contig87.20235.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=570bp|location=Sequence derived from alignment at S-ischiensis_contig87:134087..135505- (Schizocladia ischiensis KU_0333)
GCTGCAGCGGCACGGGGGCGGCCAGGGCCCCGCTCATGCCGAGTCATGTC
GTCTCGTATTGGCGCGACGTACGAGTGGGGCGTGGGCGAGTCTGAAAGGC
ACAAGCTGGAGCGTATCTGGGAGCTGCAGGCAGGGGGGGAGGGGCGACGC
TTTGAGCGGGCAGAGGCGCCCGTTCCACCCAGCGAGTTCCATCGTGCCGT
CAGGCTGCAGCGGCACGGGGGCGGCCAGGGCCCCGCTCATGCCGAGTCAT
GTCGTCTCGTATTGGCGCGACGTACGAGTGGGGCGTGGGCGAGTCTGAAA
GGCACAAGCTGGAGCGTATCTGGGAGCTGCAGGCAGGGGGGGAGGGGCGA
CGCTTTGAGCGGGCAGAGGCGCCCGTTCCACCCAGCGAGTTCCATCGTGC
CGTCAGGGACCAGTCCGTCCACCACGCCCTGTACAAGGAGCAGTACACAG
AGGCTGACGAGGGGGAGCGGGACTGGGACGCTCAGGGAGGACCAGTCCGT
CCACCACGCCCTGTACAAGGAGCAGTACACAGAGGCTGACGAGGGGGAGC
GGGACTGGGACGCTCAGGGA
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