mRNA_S-ischiensis_contig87.20232.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20232.1
Unique NamemRNA_S-ischiensis_contig87.20232.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:124326..125087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size762
Cds size555
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20232.1prot_S-ischiensis_contig87.20232.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 124468..125022 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817350.5747051-UTR-S-ischiensis_contig87:124325..1244671622817350.5747051-UTR-S-ischiensis_contig87:124325..124467Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 124326..124467 +
1695741047.9668646-UTR-S-ischiensis_contig87:124325..1244671695741047.9668646-UTR-S-ischiensis_contig87:124325..124467Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 124326..124467 +
1622817350.5961533-UTR-S-ischiensis_contig87:125022..1250871622817350.5961533-UTR-S-ischiensis_contig87:125022..125087Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 125023..125087 +
1695741047.9891336-UTR-S-ischiensis_contig87:125022..1250871695741047.9891336-UTR-S-ischiensis_contig87:125022..125087Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 125023..125087 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817350.5858984-CDS-S-ischiensis_contig87:124467..1250221622817350.5858984-CDS-S-ischiensis_contig87:124467..125022Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 124468..125022 +
1695741047.9784534-CDS-S-ischiensis_contig87:124467..1250221695741047.9784534-CDS-S-ischiensis_contig87:124467..125022Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 124468..125022 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20232.1

>prot_S-ischiensis_contig87.20232.1 ID=prot_S-ischiensis_contig87.20232.1|Name=mRNA_S-ischiensis_contig87.20232.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=185bp
MGCDVIRCWLLEYTPHWHHANTTPHHTMPPSATTTANRPDVGRGSAMRLF
LLFIACSRGVSFFSLSWLEISIVACSAHYSNCRGSRFASEQVQLHGNKSV
QYKGGYCPAGAAWGRARAHQAVQCTWKKQEQLLKTNHQGRLEGKEIWIHK
RATHGLPPNFQQAFDFFYRAVSIEACDLRVHFVM*
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mRNA from alignment at S-ischiensis_contig87:124326..125087+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20232.1 ID=mRNA_S-ischiensis_contig87.20232.1|Name=mRNA_S-ischiensis_contig87.20232.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=762bp|location=Sequence derived from alignment at S-ischiensis_contig87:124326..125087+ (Schizocladia ischiensis KU_0333)
ACTGGCTCTACGTCTGATTTGCCTGAATACCTCTGCGTGGTGGGTACAAC
AGTGCAGGGAGGCCATTACTTGTATTTTTGAGGCATTGGTGTCCGCGGAC
CGCGCCTCGTTCCATGGTCCTTACTTCCAAGTATTTGATGTGATGGGATG
TGATGTCATACGTTGCTGGTTGCTAGAGTACACACCACACTGGCACCACG
CCAACACCACACCACACCACACCATGCCACCATCTGCCACTACCACGGCT
AACAGGCCGGACGTGGGCCGTGGCAGTGCGATGCGCTTGTTTTTGCTGTT
CATTGCCTGCTCTCGAGGAGTCTCTTTTTTTTCCCTCTCTTGGCTTGAAA
TTTCCATAGTGGCATGCAGTGCACACTACAGCAACTGCAGGGGATCCCGG
TTTGCTTCTGAGCAGGTGCAGCTGCACGGAAATAAAAGTGTACAGTACAA
AGGCGGGTACTGCCCTGCTGGGGCGGCATGGGGCCGGGCCCGGGCCCATC
AGGCTGTACAGTGTACTTGGAAGAAACAGGAACAGTTGCTGAAGACTAAC
CACCAAGGGCGACTCGAAGGCAAGGAGATCTGGATCCACAAACGGGCTAC
CCACGGGCTACCACCCAATTTTCAGCAAGCGTTTGATTTTTTTTATCGCG
CAGTGTCAATTGAGGCCTGTGACTTGCGAGTCCACTTTGTGATGTGATGT
TTACGAGAATGTGCCATAAGTGCTGTAACTACCAGGAGCATTTGTTTAAC
AGACATCATGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig87:124326..125087+

>mRNA_S-ischiensis_contig87.20232.1 ID=mRNA_S-ischiensis_contig87.20232.1|Name=mRNA_S-ischiensis_contig87.20232.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1110bp|location=Sequence derived from alignment at S-ischiensis_contig87:124326..125087+ (Schizocladia ischiensis KU_0333)
ATGGGATGTGATGTCATACGTTGCTGGTTGCTAGAGTACACACCACACTG
GCACCACGCCAACACCACACCACACCACACCATGCCACCATCTGCCACTA
CCACGGCTAACAGGCCGGACGTGGGCCGTGGCAGTGCGATGCGCTTGTTT
TTGCTGTTCATTGCCTGCTCTCGAGGAGTCTCTTTTTTTTCCCTCTCTTG
GCTTGAAATTTCCATAGTGGCATGCAGTGCACACTACAGCAACTGCAGGG
GATCCCGGTTTGCTTCTGAGCAGGTGCAGCTGCACGGAAATAAAAGTGTA
CAGTACAAAGGCGGGTACTGCCCTGCTGGGGCGGCATGGGGCCGGGCCCG
GGCCCATCAGGCTGTACAGTGTACTTGGAAGAAACAGGAACAGTTGCTGA
AGACTAACCACCAAGGGCGACTCGAAGGCAAGGAGATCTGGATCCACAAA
CGGGCTACCCACGGGCTACCACCCAATTTTCAGCAAGCGTTTGATTTTTT
TTATCGCGCAGTGTCAATTGAGGCCTGTGACTTGCGAGTCCACTTTGTGA
TGTGAATGGGATGTGATGTCATACGTTGCTGGTTGCTAGAGTACACACCA
CACTGGCACCACGCCAACACCACACCACACCACACCATGCCACCATCTGC
CACTACCACGGCTAACAGGCCGGACGTGGGCCGTGGCAGTGCGATGCGCT
TGTTTTTGCTGTTCATTGCCTGCTCTCGAGGAGTCTCTTTTTTTTCCCTC
TCTTGGCTTGAAATTTCCATAGTGGCATGCAGTGCACACTACAGCAACTG
CAGGGGATCCCGGTTTGCTTCTGAGCAGGTGCAGCTGCACGGAAATAAAA
GTGTACAGTACAAAGGCGGGTACTGCCCTGCTGGGGCGGCATGGGGCCGG
GCCCGGGCCCATCAGGCTGTACAGTGTACTTGGAAGAAACAGGAACAGTT
GCTGAAGACTAACCACCAAGGGCGACTCGAAGGCAAGGAGATCTGGATCC
ACAAACGGGCTACCCACGGGCTACCACCCAATTTTCAGCAAGCGTTTGAT
TTTTTTTATCGCGCAGTGTCAATTGAGGCCTGTGACTTGCGAGTCCACTT
TGTGATGTGA
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