mRNA_S-ischiensis_contig87.20230.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20230.1
Unique NamemRNA_S-ischiensis_contig87.20230.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig87.20230.1 vs. uniprot
Match: D8LF53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF53_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 6.230e-41
Identity = 74/140 (52.86%), Postives = 96/140 (68.57%), Query Frame = 3 
Query:  111 LWTGSGHWRGQLRPHSQFPPLWSLVSAAGLF-LSTVGPAVLRVDPSPSPGDES---TAEGRLKGAMISLVKAYKREISPFLPPACRFVPTCSVYAVDSIEQFGPSKGAVLMVWRLMRCNPFGGYGYDPPQWPPPGWFAGK 518
             W   G  +G  +P    P LW+L  AAG+  +++   AV R+  +   G++     A  ++  AMIS +KAYK+E+SP +PPACRF+PTCSVY V +IE+FGP+KGAVL  WRLMRCNPF GYG D PQWPPPGWFAG+
Sbjct:   16 FWPDRG--QGSAQPRGSPPALWTLACAAGVVAVASARSAVSRLVLASDDGEQDGGGAAVNKVGAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAGE 153
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BLAST of mRNA_S-ischiensis_contig87.20230.1 vs. uniprot
Match: A0A835ZNH9_9STRA (Hemolytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZNH9_9STRA)

HSP 1 Score: 143 bits (361), Expect = 3.560e-36
Identity = 60/80 (75.00%), Postives = 66/80 (82.50%), Query Frame = 3 
Query:  282 LKGAMISLVKAYKREISPFLPPACRFVPTCSVYAVDSIEQFGPSKGAVLMVWRLMRCNPFGGYGYDPPQWPPPGWFAGKH 521
            +K AMI  +KAYKREISP LPPACRF PTCSVYAV+SIE+FG  +G VL  WRL+RC P GGYGYDPPQWPPP WFAG H
Sbjct:   64 IKAAMIGFIKAYKREISPLLPPACRFFPTCSVYAVESIEEFGAWRGFVLTAWRLLRCTPVGGYGYDPPQWPPPNWFAGIH 143
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BLAST of mRNA_S-ischiensis_contig87.20230.1 vs. uniprot
Match: A0A7S1U9Q3_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9Q3_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.310e-33
Identity = 59/94 (62.77%), Postives = 72/94 (76.60%), Query Frame = 3 
Query:  234 VDPSPSPGDESTAEGRLKGAMISLVKAYKREISPFLPPACRFVPTCSVYAVDSIEQFGPSKGAVLMVWRLMRCNPFGGYGYDPPQWPPPGWFAG 515
            +DP+P   DES     L  A++  V+ YKREISP + PACRF+PTCS Y++DSI+ +GP KG VL  WR++RCNPFGG GYDPPQWPPPGWFAG
Sbjct:   59 LDPNPDEEDES----ELSRALMGAVRWYKREISPSMAPACRFLPTCSGYSIDSIKTYGPWKGLVLTAWRILRCNPFGGSGYDPPQWPPPGWFAG 148
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BLAST of mRNA_S-ischiensis_contig87.20230.1 vs. uniprot
Match: A0A4D9DFE3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DFE3_9STRA)

HSP 1 Score: 125 bits (315), Expect = 5.790e-30
Identity = 50/74 (67.57%), Postives = 61/74 (82.43%), Query Frame = 3 
Query:  294 MISLVKAYKREISPFLPPACRFVPTCSVYAVDSIEQFGPSKGAVLMVWRLMRCNPFGGYGYDPPQWPPPGWFAG 515
            +I+  + YKR ISP LP ACRF PTCS YA++S+++FGP+KGAVL  WRL+RCNP GG G+DPPQWPPPGW AG
Sbjct:   68 LINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQWPPPGWKAG 141
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BLAST of mRNA_S-ischiensis_contig87.20230.1 vs. uniprot
Match: W7TML8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TML8_9STRA)

HSP 1 Score: 126 bits (316), Expect = 6.640e-29
Identity = 54/89 (60.67%), Postives = 67/89 (75.28%), Query Frame = 3 
Query:  249 SPGDESTAEGRLKGAMISLVKAYKREISPFLPPACRFVPTCSVYAVDSIEQFGPSKGAVLMVWRLMRCNPFGGYGYDPPQWPPPGWFAG 515
            +P D S+A       +I+  + YKR ISP LP ACRF PTCS YA++S+++FGP+KGAVL  WRL+RCNP GG G+DPPQWPPPGW AG
Sbjct:  157 APTDASSA------ILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQWPPPGWKAG 239
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BLAST of mRNA_S-ischiensis_contig87.20230.1 vs. uniprot
Match: A0A7S0QB70_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QB70_9EUKA)

HSP 1 Score: 121 bits (304), Expect = 7.020e-28
Identity = 55/96 (57.29%), Postives = 64/96 (66.67%), Query Frame = 3 
Query:  297 ISLVKAYKREISPFLPPACRFVPTCSVYAVDSIEQFGPSKGAVLMVWRLMRCNPFGGYGYDPPQWPPPGWFAGKH*VSAL*HVFCLEQQADRPRLL 584
            +  +K YKR +SP LPP CRFVPTCS YA+ S EQF P + AVL VWRL+RCNP  GYG D PQWPPPG++AG   V        L+ QA R R L
Sbjct:   42 VGALKWYKRALSPLLPPGCRFVPTCSEYAIQSFEQFSPVQAAVLTVWRLVRCNPTAGYGVDAPQWPPPGYWAGSQRVRTS-----LDDQASRRRAL 132
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BLAST of mRNA_S-ischiensis_contig87.20230.1 vs. uniprot
Match: A0A7S4FBU4_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FBU4_CHRCT)

HSP 1 Score: 123 bits (309), Expect = 1.400e-27
Identity = 54/107 (50.47%), Postives = 71/107 (66.36%), Query Frame = 3 
Query:  264 STAEGRLKGAMISLVKAYKREISPFLPPACRFVPTCSVYAVDSIEQFGPSKGAVLMVWRLMRCNPFGGYGYDPPQWPPPGWFAGKH*VSAL*HVFCLEQQADRPRLL 584
            S++   +  A +S++  YKR ISP LPP CRF+PTCS YA+ S +QF P++ AVLM WRL+RCNP GGYG D PQWPPP ++AG   V        L+ +A R R +
Sbjct:  110 SSSRSAVSDAAVSVLHWYKRTISPLLPPGCRFIPTCSEYAIQSFKQFSPAQAAVLMAWRLIRCNPTGGYGVDEPQWPPPAYWAGSQRVRTP-----LDDEASRTRAI 211
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BLAST of mRNA_S-ischiensis_contig87.20230.1 vs. uniprot
Match: B8BR73_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BR73_THAPS)

HSP 1 Score: 115 bits (288), Expect = 3.620e-27
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 3 
Query:  282 LKGAMISLVKAYKREISPFLPPACRFVPTCSVYAVDSIEQFGPSKGAVLMVWRLMRCNPFGGYGYDPPQWPPPGWFAGKH 521
            +  +MI+ +  YK+ ISP LPPACRF+PTCS Y V +IE+FGPSKG +L  WRL RC+PFGG GYDPP+WPP  +  G +
Sbjct:    1 MSSSMINAIGFYKQWISPLLPPACRFLPTCSQYGVQAIEEFGPSKGVLLTAWRLARCSPFGGRGYDPPKWPPVAYNYGSY 80
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BLAST of mRNA_S-ischiensis_contig87.20230.1 vs. uniprot
Match: A0A7S2ENE8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ENE8_TRICV)

HSP 1 Score: 120 bits (302), Expect = 5.680e-27
Identity = 49/83 (59.04%), Postives = 64/83 (77.11%), Query Frame = 3 
Query:  273 EGRLKGAMISLVKAYKREISPFLPPACRFVPTCSVYAVDSIEQFGPSKGAVLMVWRLMRCNPFGGYGYDPPQWPPPGWFAGKH 521
            +G +  +M+S +  YK+ ISP LPPACRFVPTCS Y V +I++FGP+KGA+L  WRLMRC+PFGG GYDPP+WPP  +  G +
Sbjct:  167 DGAMSASMVSAIGFYKQFISPLLPPACRFVPTCSQYGVQAIQEFGPTKGAMLTAWRLMRCSPFGGKGYDPPRWPPVPYNYGSY 249
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BLAST of mRNA_S-ischiensis_contig87.20230.1 vs. uniprot
Match: A0A7S1XBZ4_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XBZ4_9RHOD)

HSP 1 Score: 116 bits (290), Expect = 5.860e-27
Identity = 45/85 (52.94%), Postives = 65/85 (76.47%), Query Frame = 3 
Query:  264 STAEGRLKGAMISLVKAYKREISPFLPPACRFVPTCSVYAVDSIEQFGPSKGAVLMVWRLMRCNPFGGYGYDPPQWPPPGWFAGK 518
            S+  G L   M++ ++ YK +ISP +PP CRF+P+CS Y++++I++FGP+KG VL  WR++RCNPFGG GYDPPQWPP  + +G 
Sbjct:   32 SSRSGFLSVVMLTALRWYKEQISPLMPPNCRFLPSCSSYSIEAIQEFGPAKGLVLTAWRILRCNPFGGAGYDPPQWPPVHFRSGS 116
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF53_ECTSI6.230e-4152.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZNH9_9STRA3.560e-3675.00Hemolytic domain-containing protein n=1 Tax=Tribon... [more]
A0A7S1U9Q3_9STRA1.310e-3362.77Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A4D9DFE3_9STRA5.790e-3067.57Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TML8_9STRA6.640e-2960.67Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S0QB70_9EUKA7.020e-2857.29Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S4FBU4_CHRCT1.400e-2750.47Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
B8BR73_THAPS3.620e-2758.75Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2ENE8_TRICV5.680e-2759.04Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1XBZ4_9RHOD5.860e-2752.94Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:115439..118095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.0
Seed ortholog evalue2.4e-31
Seed eggNOG ortholog2880.D8LF53
KEGG koko:K08998
EggNOG free text desc.Haemolytic
EggNOG OGs2S1FR@2759,COG0759@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons2
Model size2522
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20230.1prot_S-ischiensis_contig87.20230.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 115732..115962 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817352.1538122-UTR-S-ischiensis_contig87:115438..1157311622817352.1538122-UTR-S-ischiensis_contig87:115438..115731Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 115439..115731 +
1695741049.2295163-UTR-S-ischiensis_contig87:115438..1157311695741049.2295163-UTR-S-ischiensis_contig87:115438..115731Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 115439..115731 +
1622817352.180819-UTR-S-ischiensis_contig87:115962..1161931622817352.180819-UTR-S-ischiensis_contig87:115962..116193Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 115963..116193 +
1695741049.2494464-UTR-S-ischiensis_contig87:115962..1161931695741049.2494464-UTR-S-ischiensis_contig87:115962..116193Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 115963..116193 +
1622817352.1935205-UTR-S-ischiensis_contig87:116328..1180951622817352.1935205-UTR-S-ischiensis_contig87:116328..118095Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 116329..118095 +
1695741049.2621484-UTR-S-ischiensis_contig87:116328..1180951695741049.2621484-UTR-S-ischiensis_contig87:116328..118095Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 116329..118095 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817352.1681762-CDS-S-ischiensis_contig87:115731..1159621622817352.1681762-CDS-S-ischiensis_contig87:115731..115962Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 115732..115962 +
1695741049.2403686-CDS-S-ischiensis_contig87:115731..1159621695741049.2403686-CDS-S-ischiensis_contig87:115731..115962Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 115732..115962 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20230.1

>prot_S-ischiensis_contig87.20230.1 ID=prot_S-ischiensis_contig87.20230.1|Name=mRNA_S-ischiensis_contig87.20230.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=77bp
MISLVKAYKREISPFLPPACRFVPTCSVYAVDSIEQFGPSKGAVLMVWRL
MRCNPFGGYGYDPPQWPPPGWFAGKH*
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mRNA from alignment at S-ischiensis_contig87:115439..118095+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20230.1 ID=mRNA_S-ischiensis_contig87.20230.1|Name=mRNA_S-ischiensis_contig87.20230.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2657bp|location=Sequence derived from alignment at S-ischiensis_contig87:115439..118095+ (Schizocladia ischiensis KU_0333)
GCGTTGCCGCTGCCACATCTCTCGCAGGCTCGGCGGCGGTGGCTGCGAGG
TCTCCCAGTCGACGGCGCTGGCCTTGCGCGAAGACAACGGCATGCGTCCA
CCACGCCGGATTGTGGACCGGCAGTGGCCACTGGCGTGGACAATTGCGAC
CGCACAGCCAGTTTCCTCCCCTGTGGTCGCTGGTATCAGCCGCAGGCCTC
TTTTTGAGTACGGTGGGCCCGGCTGTCCTGCGCGTGGACCCGAGCCCCAG
CCCCGGGGACGAAAGTACAGCCGAGGGCAGGCTGAAGGGCGCGATGATCT
CCTTGGTCAAGGCGTACAAGCGGGAGATCTCCCCGTTTTTGCCACCTGCC
TGCAGGTTTGTGCCCACGTGCAGCGTCTATGCGGTGGACTCCATCGAGCA
GTTTGGGCCTTCGAAAGGCGCCGTGCTGATGGTGTGGCGGCTCATGCGCT
GCAACCCGTTCGGCGGTTACGGTTACGACCCACCGCAGTGGCCCCCGCCG
GGTTGGTTCGCGGGCAAGCACTGAGTGAGTGCATTATAGCATGTTTTCTG
TCTGGAACAACAGGCGGACAGGCCGCGTCTCCTGGCCGGTCGATGGAGGG
TAGCCCCCGGGCGCAACTGTCTACCGATACAGTACTTATATGGACCAATG
TACACTTTGAGCGCACTGTAATGTCAAAGCGTGCGGCCACTCTGACCTTT
TAGCACCAAGTGGTCCACCTGTTCGAGTTGGCTTTGGTTTCGTTCCAACA
TGCAGGTGCAGGTCCAGGGGGTTGGGACGATACAGTTTGTAGTGAACACA
CGCGATTTAATAATAATGCGGCCACTCTGACCTTTTAGCACCAAGTGGTC
CACCTGTTCGAGTTGGCTTTGGTTTCGTTCCAACATGCAGGTGCAGGTCC
AGGGGGTTGGGACGATACAGTTTGTAGTGAACACACGCGATTTAATACTA
CGTAGACCTCTACTTCCGGAAGTAATATATGCCAACAAGAGAAAACACGC
AGTCCGTCAGGCGATCTGTTGTGCTGTTGAAGGACAGTGATAACTGTGCA
CGTGATAGTGTGCACTGAGCATCGCTGCAAACCACTGCGCGATCGGGTCA
GTGCACCGTGCGCAGACAACAAATCACTCACAGCGCTCACTTTTGACGTT
TACCTTGGAGGAACCAGCGGCCATGCACTACAGTAGGTTCCTCACCAAAG
TCCGACTGCACTGGATTACGCTACTTGAGCACAGTATGCCCCACTCTGCA
CTGTTTTCCATTGGCGTTTATGTCTACAGTATATTCTTCGTATACATGTC
ATCGTGTACGTGCTGTGTTTGATGAAATCCCGAGACCATTGGCCCCGCTC
CTCAACCGAGACGGAGCATCTCTGTATGCTCAAGGCAATCTACCTGAGGT
GCAGCTAAGGTTCCATCTACTACGTATTCATCAAGGCGCCACTGGCCTCC
AAACGGTGAAGTTCCCGTGGGCTCTAGAGCCCGCCTCGCATCCCCAGGTG
TTTTGTTCATCTTCTTTATGGGAATGCTGTGCAGATGCTATATGACCGGT
GGGATTGTTCTATATGCACTCATGTCGGACACGGTTACCCTGTGTCCTGT
GCATGCCACCGCCCGTCGACCCAGTACACTACAATAAGTGCTGGAACATC
GATTGGCCCTATTGCGTGAAGCGAACGAGCGAGTTGTGGGCCCGTGGCAC
AATTGTGGCCTCACCAGAAGCCCTTTTCACTCGGGTTTTCCCCCGTGTAC
GCCCACGCCTCTCCGGCGAGAGCCTGAGGTATGCTCTGTCCTGGCCTAAG
TAGTTTTGTAGGGATGCAACGCCGATGGCCGAAAGGCTACCCTGCCCTGC
GGGCCCGGGGGCGGTCGGCGGGCCCATGGCCGAGCCGCGCCCTGGGGGGT
AGCTATTGCACCAGTCCGACATGAGCACACACAGCAATGCACAACTGGAC
AGGTGCTACAGCTGGGTTTGCTGCGCTGGCTGTAATCCTGGAGGCCCATG
CTCGGAGGCGGGTGTGCGGAGGCTCAGGCGGGTGGTTCACTGCGAGAGCG
GGAGGCAGGTGCCGGGGACCGTATATTTTTCTACCGTGAGCATGAAGAAA
GAGCAAGTTAGCAGTTGGCGGACAGCGCAGGAGAGTAGGTCCCTCGGAGA
AGGTCTTGGGCATTTGGAAGTCAGTGTGCTCGTGGTACTGTACCGTACTG
TAGCACTGCTACTGTATGGTAGAGTGGCGTACTGTACACGCTGTAGTGCA
AGTACACCGCAGTGCGTGGTACGTACTGTAATCATGATTCACGCGCACCA
TCTCCTCCGCACGCTGTATGTTTCTGAATATACTACAGGTGCAGAAGTAC
CTGAACCCCTTCACGAATCGGCCCCAAGGGCCATTCTTGGCGACGGCAAA
ATCGGCAATTTTTAGTCACTCTTGATTCTTGTTTGTCCATTGCCTGCCGT
GCGCCTCACCGCGTTTTTCATGCCGGCAAGGGACTCGCCACCCGGGTCGG
GTCGCTCGCCGGCAAGAGAAACGCCGTTTTCGGAGATCCATCACAGTAGG
GTGTTTGCGCTACATTTTTGCTTATCGGCACTTTGATTACCGCGAGGCCC
TGTCCGATAACACTTTCTGATCGCTGCAAGTGAGTGCGGGTAATCTGTTC
TGAAAAA
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Coding sequence (CDS) from alignment at S-ischiensis_contig87:115439..118095+

>mRNA_S-ischiensis_contig87.20230.1 ID=mRNA_S-ischiensis_contig87.20230.1|Name=mRNA_S-ischiensis_contig87.20230.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=462bp|location=Sequence derived from alignment at S-ischiensis_contig87:115439..118095+ (Schizocladia ischiensis KU_0333)
ATGATCTCCTTGGTCAAGGCGTACAAGCGGGAGATCTCCCCGTTTTTGCC
ACCTGCCTGCAGGTTTGTGCCCACGTGCAGCGTCTATGCGGTGGACTCCA
TCGAGCAGTTTGGGCCTTCGAAAGGCGCCGTGCTGATGGTGTGGCGGCTC
ATGCGCTGCAACCCGTTCGGCGGTTACGGTTACGACCCACCGCAGTGGCC
CCCGCCGGGTTGGTTCGCGGGCAAGCACTGAATGATCTCCTTGGTCAAGG
CGTACAAGCGGGAGATCTCCCCGTTTTTGCCACCTGCCTGCAGGTTTGTG
CCCACGTGCAGCGTCTATGCGGTGGACTCCATCGAGCAGTTTGGGCCTTC
GAAAGGCGCCGTGCTGATGGTGTGGCGGCTCATGCGCTGCAACCCGTTCG
GCGGTTACGGTTACGACCCACCGCAGTGGCCCCCGCCGGGTTGGTTCGCG
GGCAAGCACTGA
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