mRNA_S-ischiensis_contig87.20218.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20218.1
Unique NamemRNA_S-ischiensis_contig87.20218.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:4281..4972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size341
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817348.9254415-CDS-S-ischiensis_contig87:4280..44661622817348.9254415-CDS-S-ischiensis_contig87:4280..4466Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 4281..4466 -
1695741046.8669717-CDS-S-ischiensis_contig87:4280..44661695741046.8669717-CDS-S-ischiensis_contig87:4280..4466Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 4281..4466 -
1622817348.9429665-CDS-S-ischiensis_contig87:4819..49721622817348.9429665-CDS-S-ischiensis_contig87:4819..4972Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 4820..4972 -
1695741046.8782883-CDS-S-ischiensis_contig87:4819..49721695741046.8782883-CDS-S-ischiensis_contig87:4819..4972Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 4820..4972 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20218.1prot_S-ischiensis_contig87.20218.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 4281..4972 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20218.1

>prot_S-ischiensis_contig87.20218.1 ID=prot_S-ischiensis_contig87.20218.1|Name=mRNA_S-ischiensis_contig87.20218.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=113bp
QPQVPEVPRQVREELRLLWVQHLWLQEGREEVRVLRRSTRLMTTTRRSST
AWHPNAWWAHRLAATMSQSIPSRYVLMTRTSTTRRTTATSTRAAGLVATA
TTTTATATTAASS
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mRNA from alignment at S-ischiensis_contig87:4281..4972-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20218.1 ID=mRNA_S-ischiensis_contig87.20218.1|Name=mRNA_S-ischiensis_contig87.20218.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=692bp|location=Sequence derived from alignment at S-ischiensis_contig87:4281..4972- (Schizocladia ischiensis KU_0333)
CAGCCCCAAGTGCCTGAAGTACCACGACAAGTGCGAGAAGAACTCCGACT
GCTGTGGGTACAACATCTGTGGCTCCAAGAAGGACGAGAAGAAGTACGAG
TACTCCGGAGGAGTACAAGATTGATGACGACTACAAGGAGGAGCAGTACT
GCGGTGAGTCAATGGTGTGGGTGTCTCAGAACAACAGCACGTAGCGGGTC
GCCCTTGAGTTTTCAACTATTACTTCAGAAACTGGCTCGCATGAAATCTT
GGCTGTGCTTCGGGGGCGGCAAACATGGTTCGGTAGAACCCCCAGTTCTG
CTCGCACACGCGTGGCGCCAGTCATGCAGGTCCACTGTTTGAGCAAAGGC
GCCGAGGAGGCCGAGGCTCTTCTTGTGGAGTACCTGACATTTCAACCTGT
GTGCATGTTGGCCACGGAGCTCTTGTGATGCTGCACTGACTAAGTATATG
GCGTGAGCCTCTCCGTCCCCCGCGCACCTTCCGTATGCCCCCCCACCGCC
ACCCAGTGGCACCCGAATGCATGGTGGGCACATCGTTTGGCTGCCACGAT
GAGTCAGAGCATTCCGTCCAGATATGTGTTGATGACAAGGACAAGTACTA
CGCGAAGGACCACGGCGACAAGTACAAGGGCCGCAGGCTTGGTGGCTACG
GCAACGACTACTACGGCAACGGCCACTACGGCGGCAAGCAGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig87:4281..4972-

>mRNA_S-ischiensis_contig87.20218.1 ID=mRNA_S-ischiensis_contig87.20218.1|Name=mRNA_S-ischiensis_contig87.20218.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=678bp|location=Sequence derived from alignment at S-ischiensis_contig87:4281..4972- (Schizocladia ischiensis KU_0333)
CAGCCCCAAGTGCCTGAAGTACCACGACAAGTGCGAGAAGAACTCCGACT
GCTGTGGGTACAACATCTGTGGCTCCAAGAAGGACGAGAAGAAGTACGAG
TACTCCGGAGGAGTACAAGATTGATGACGACTACAAGGAGGAGCAGTACT
GCGCAGCCCCAAGTGCCTGAAGTACCACGACAAGTGCGAGAAGAACTCCG
ACTGCTGTGGGTACAACATCTGTGGCTCCAAGAAGGACGAGAAGAAGTAC
GAGTACTCCGGAGGAGTACAAGATTGATGACGACTACAAGGAGGAGCAGT
ACTGCGTGGCACCCGAATGCATGGTGGGCACATCGTTTGGCTGCCACGAT
GAGTCAGAGCATTCCGTCCAGATATGTGTTGATGACAAGGACAAGTACTA
CGCGAAGGACCACGGCGACAAGTACAAGGGCCGCAGGCTTGGTGGCTACG
GCAACGACTACTACGGCAACGGCCACTACGGCGGCAAGCAGTTGGCACCC
GAATGCATGGTGGGCACATCGTTTGGCTGCCACGATGAGTCAGAGCATTC
CGTCCAGATATGTGTTGATGACAAGGACAAGTACTACGCGAAGGACCACG
GCGACAAGTACAAGGGCCGCAGGCTTGGTGGCTACGGCAACGACTACTAC
GGCAACGGCCACTACGGCGGCAAGCAGT
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