mRNA_S-ischiensis_contig86.20216.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig86.20216.1
Unique NamemRNA_S-ischiensis_contig86.20216.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig86.20216.1 vs. uniprot
Match: A0A2Z4MT98_SACJA (HMG-box containing protein isoform 2 n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2Z4MT98_SACJA)

HSP 1 Score: 115 bits (289), Expect = 4.770e-26
Identity = 62/106 (58.49%), Postives = 71/106 (66.98%), Query Frame = 2 
Query:    2 EMKAYRPTQGYEREAPRINIPKGGDSKALALEFDTPLAAMYLPRPKPAYTHFAHQDRRGVLSSGSVPAKALMSKTFAQRWQAMPSEEVTLYHELEYADKERYYQDA 319
            EM AYRP +GYER APRIN+PKG  + +   +      A    RP PAYTHFAHQ++ GVLSS S  AK LMSK F QRW  MP EE  LY ELE ADKERY ++A
Sbjct:  141 EMSAYRPPEGYERIAPRINVPKGFSTVSWDPDVIAGTTAQPCRRPWPAYTHFAHQEKIGVLSSRSNRAKTLMSKAFGQRWHGMPYEETELYKELEGADKERYEKEA 246
[Close]
BLAST of mRNA_S-ischiensis_contig86.20216.1 vs. uniprot
Match: A0A2Z4MTA2_SACJA (HMG-box containing protein isoform 1 n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2Z4MTA2_SACJA)

HSP 1 Score: 115 bits (289), Expect = 8.670e-25
Identity = 62/106 (58.49%), Postives = 71/106 (66.98%), Query Frame = 2 
Query:    2 EMKAYRPTQGYEREAPRINIPKGGDSKALALEFDTPLAAMYLPRPKPAYTHFAHQDRRGVLSSGSVPAKALMSKTFAQRWQAMPSEEVTLYHELEYADKERYYQDA 319
            EM AYRP +GYER APRIN+PKG  + +   +      A    RP PAYTHFAHQ++ GVLSS S  AK LMSK F QRW  MP EE  LY ELE ADKERY ++A
Sbjct:  306 EMSAYRPPEGYERIAPRINVPKGFSTVSWDPDVIAGTTAQPCRRPWPAYTHFAHQEKIGVLSSRSNRAKTLMSKAFGQRWHGMPYEETELYKELEGADKERYEKEA 411
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig86.20216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2Z4MT98_SACJA4.770e-2658.49HMG-box containing protein isoform 2 n=1 Tax=Sacch... [more]
A0A2Z4MTA2_SACJA8.670e-2558.49HMG-box containing protein isoform 1 n=1 Tax=Sacch... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig86contigS-ischiensis_contig86:622567..624592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1318
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig86.20216.1prot_S-ischiensis_contig86.20216.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig86 622571..623656 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817348.7863464-UTR-S-ischiensis_contig86:622566..6225701622817348.7863464-UTR-S-ischiensis_contig86:622566..622570Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 622567..622570 +
1695741046.773449-UTR-S-ischiensis_contig86:622566..6225701695741046.773449-UTR-S-ischiensis_contig86:622566..622570Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 622567..622570 +
1622817348.835901-UTR-S-ischiensis_contig86:623656..6245921622817348.835901-UTR-S-ischiensis_contig86:623656..624592Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 623657..624592 +
1695741046.8199806-UTR-S-ischiensis_contig86:623656..6245921695741046.8199806-UTR-S-ischiensis_contig86:623656..624592Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 623657..624592 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817348.8016138-CDS-S-ischiensis_contig86:622570..6226171622817348.8016138-CDS-S-ischiensis_contig86:622570..622617Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 622571..622617 +
1695741046.7890182-CDS-S-ischiensis_contig86:622570..6226171695741046.7890182-CDS-S-ischiensis_contig86:622570..622617Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 622571..622617 +
1622817348.8126464-CDS-S-ischiensis_contig86:622760..6228751622817348.8126464-CDS-S-ischiensis_contig86:622760..622875Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 622761..622875 +
1695741046.8001707-CDS-S-ischiensis_contig86:622760..6228751695741046.8001707-CDS-S-ischiensis_contig86:622760..622875Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 622761..622875 +
1622817348.8235073-CDS-S-ischiensis_contig86:623440..6236561622817348.8235073-CDS-S-ischiensis_contig86:623440..623656Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 623441..623656 +
1695741046.8096027-CDS-S-ischiensis_contig86:623440..6236561695741046.8096027-CDS-S-ischiensis_contig86:623440..623656Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 623441..623656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig86.20216.1

>prot_S-ischiensis_contig86.20216.1 ID=prot_S-ischiensis_contig86.20216.1|Name=mRNA_S-ischiensis_contig86.20216.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=126bp
MKAYRPTQGYEREAPRINIPKGGDSKALALEFDTPLAAMYLPRPKPAYTH
FAHQDRRGVLSSGSVPAKALMSKTFAQRWQAMPSEEVTLYHELEYADKER
YYQDAKTHEDHTSTASGLQGQREIA*
back to top

mRNA from alignment at S-ischiensis_contig86:622567..624592+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig86.20216.1 ID=mRNA_S-ischiensis_contig86.20216.1|Name=mRNA_S-ischiensis_contig86.20216.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2026bp|location=Sequence derived from alignment at S-ischiensis_contig86:622567..624592+ (Schizocladia ischiensis KU_0333)
GGAGATGAAAGCTTACCGGCCAACTCAAGGATATGAGCGCGAAGCCCCAC
GGTGAGAAGACGAGGGTTTTCGATGGCCTTTGGAGCTGGTGGCTGCTGTG
AAGCATCTTGTCTCGTAAACTGTGTGCCAGCAGCATGAGTGCTACTCTGA
CTGCCTACCACCGAACGATTCCCCTGTGTATGACGATTCCCCAGTATTAA
CATCCCCAAAGGCGGTGATTCGAAGGCTCTGGCCCTGGAGTTTGACACTC
CCCTGGCTGCCATGTACCTCCCAAGACCCAAGCCTGCGTACACACACTTT
GCCCATCAGGTGAGCAGCACAGCGTGCAGCAACTCCTCAGTGGGATACGG
ACCGCCTCCTTGGGAAACATGATTTCAACCAGCCTCGTTGCATCAACCCT
GTGCACTCAATACTGATTTTTCAAATTACTGCCATGGTATAGTATTGAGA
GTGTGCGGCACGGTGGGCCAGCCCCTGCCCTGCAATCCACTCCATTGTCT
TGTATCCGCTGCCACTGCTCGTACTCCTACTCATGGTTCATATCAAAACA
ACTGGACCCAGACTGGATCCCATTGTCATTGGAGTGCATGAAAGTGGCCA
TCAACACAATGCGAGTGCGGCTGCGAAGTTTCGCGGAAGCAATGCCCTCT
CGCTTTAGCCTTAAGTCATATAGCCGGATGTTGCTCGCATTCACGCGTGC
GGTGCAAGCCCGCCTGTGCTCCCTTCAGCAAAACTTTGCCCGCAGCATAA
ATTCAAAGCAAACGCTTTCAAGGAGAAAGCTGAATGTCTCTGTTGCAAAT
CTACTCTGGCAGTGCACCCAACCATGATAGTTCGCAGATTTTTACACTAG
ATGCTTCGTTGCTCAATCATCCAGGACAGGAGAGGCGTGCTCTCATCAGG
ATCCGTTCCTGCCAAGGCTCTGATGAGCAAGACATTTGCGCAGAGATGGC
AAGCCATGCCGAGCGAAGAAGTCACCTTGTACCATGAGCTCGAGTACGCG
GACAAGGAACGATATTATCAAGATGCCAAGACACACGAGGACCACACTTC
AACAGCTTCGGGGCTCCAAGGCCAGCGGGAAATTGCTTGACAAGACACCC
CGGGGAGCACCGAGGATGGAATCCCCACCTGGGCCGCCATTCGCAATATA
CTCGATCCACGAGAGGGCTGCTCAGGGCGGTCACGGCATGCTGGCTTGCA
AGTATGAGCACTATGGATGCAGCGCTTCTGCAACAGCACGTCGAAGTACT
GCGCTACTAGTACACCACCCGGTGGAGCCCACCTAGCTACTGCAGCTTGC
AGTTGGTGACATATGTATTGCATTTGCTCTACCTGTAATTGATACTGCCT
GTTAAGCCCGGGCTGAGTGAGGCTTCACTAGTAATGCATTACACCACCTG
CAGTGCAGTAGACACATGGTACACTGGCCGGCCCAGGTTTCAGGTCCCAC
CAGGCTGCGACTGGGCACTATTGTTTTCTTCCCACGGCCGGTGCATGAGT
TGGCGGAAGTTGCCAAACTTGCTTGTCAACAGGGTATACTAATGGAAGCT
CACCTTGAATGCCAAAAACCCTTCGAGGTTCAAGCAGGTGCCCGGATGGG
ATTTCGATTTGTACTCATAAAATTTATAGCCAAACCCTATGCACTGTGGA
GTACCGTACATTTAATTTAGGGATGATCGCGATCCGCCCCCCCGGCCCGC
CATGTTCGCCGTCCTGTTGTTGCTAAACTCTTTGTCGCAAAAACATGATA
GTAGCTAGTGGTCACTCGGAGGGTGCGGGGCAGGAAGTCGTTGAAGCTCC
TTTTTATCTAGGATTCTAGACTGGGAAACTCTGGGAGTGGGTTCTTGTTT
CTCACGCTACATACTAGCCTGAGTACGTTTCCCTCAAGTGTAGCTCTGGT
TGGTACCTTTCTAGCGCCGGTTTCGAAACTGGTTGTGATTCATATAAATT
GGTACAATCGCACTGTGTGAGATTGAGTGTTCTCGCATTAATGGTTATCA
CATCATTTAATAATTGAGTGGTCTCG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig86:622567..624592+

>mRNA_S-ischiensis_contig86.20216.1 ID=mRNA_S-ischiensis_contig86.20216.1|Name=mRNA_S-ischiensis_contig86.20216.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=756bp|location=Sequence derived from alignment at S-ischiensis_contig86:622567..624592+ (Schizocladia ischiensis KU_0333)
ATGAAAGCTTACCGGCCAACTCAAGGATATGAGCGCGAAGCCCCACGATG
AAAGCTTACCGGCCAACTCAAGGATATGAGCGCGAAGCCCCACGTATTAA
CATCCCCAAAGGCGGTGATTCGAAGGCTCTGGCCCTGGAGTTTGACACTC
CCCTGGCTGCCATGTACCTCCCAAGACCCAAGCCTGCGTACACACACTTT
GCCCATCAGTATTAACATCCCCAAAGGCGGTGATTCGAAGGCTCTGGCCC
TGGAGTTTGACACTCCCCTGGCTGCCATGTACCTCCCAAGACCCAAGCCT
GCGTACACACACTTTGCCCATCAGGACAGGAGAGGCGTGCTCTCATCAGG
ATCCGTTCCTGCCAAGGCTCTGATGAGCAAGACATTTGCGCAGAGATGGC
AAGCCATGCCGAGCGAAGAAGTCACCTTGTACCATGAGCTCGAGTACGCG
GACAAGGAACGATATTATCAAGATGCCAAGACACACGAGGACCACACTTC
AACAGCTTCGGGGCTCCAAGGCCAGCGGGAAATTGCTTGAGACAGGAGAG
GCGTGCTCTCATCAGGATCCGTTCCTGCCAAGGCTCTGATGAGCAAGACA
TTTGCGCAGAGATGGCAAGCCATGCCGAGCGAAGAAGTCACCTTGTACCA
TGAGCTCGAGTACGCGGACAAGGAACGATATTATCAAGATGCCAAGACAC
ACGAGGACCACACTTCAACAGCTTCGGGGCTCCAAGGCCAGCGGGAAATT
GCTTGA
back to top