mRNA_S-ischiensis_contig86.20203.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig86.20203.1
Unique NamemRNA_S-ischiensis_contig86.20203.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig86.20203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig86contigS-ischiensis_contig86:379433..379871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size439
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig86.20203.1prot_S-ischiensis_contig86.20203.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig86 379460..379774 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817346.5873961-UTR-S-ischiensis_contig86:379432..3794591622817346.5873961-UTR-S-ischiensis_contig86:379432..379459Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 379433..379459 +
1695741044.9677684-UTR-S-ischiensis_contig86:379432..3794591695741044.9677684-UTR-S-ischiensis_contig86:379432..379459Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 379433..379459 +
1622817346.6163883-UTR-S-ischiensis_contig86:379774..3798711622817346.6163883-UTR-S-ischiensis_contig86:379774..379871Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 379775..379871 +
1695741044.9959497-UTR-S-ischiensis_contig86:379774..3798711695741044.9959497-UTR-S-ischiensis_contig86:379774..379871Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 379775..379871 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817346.603489-CDS-S-ischiensis_contig86:379459..3797741622817346.603489-CDS-S-ischiensis_contig86:379459..379774Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 379460..379774 +
1695741044.9831617-CDS-S-ischiensis_contig86:379459..3797741695741044.9831617-CDS-S-ischiensis_contig86:379459..379774Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 379460..379774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig86.20203.1

>prot_S-ischiensis_contig86.20203.1 ID=prot_S-ischiensis_contig86.20203.1|Name=mRNA_S-ischiensis_contig86.20203.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=105bp
MLMFNCCTIHKQQPGRFPAPPLVELRHRLALGVHQLDTILYATTSEPPPT
TPPRCHTNNPSTHAPRPLWPPSPPDPPDGRCYPIVPRRLSPTSSTDWPKD
RPSG*
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mRNA from alignment at S-ischiensis_contig86:379433..379871+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig86.20203.1 ID=mRNA_S-ischiensis_contig86.20203.1|Name=mRNA_S-ischiensis_contig86.20203.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=439bp|location=Sequence derived from alignment at S-ischiensis_contig86:379433..379871+ (Schizocladia ischiensis KU_0333)
GTCGAGCCCAGGGTAGGATGTGGCGCCATGTTAATGTTCAACTGCTGTAC
TATACACAAGCAGCAGCCTGGGCGCTTCCCCGCCCCCCCGCTTGTCGAGC
TTCGCCATAGGCTCGCCTTGGGTGTTCACCAACTCGATACAATACTGTAC
GCTACAACCTCGGAGCCACCTCCAACTACCCCTCCTCGCTGCCACACCAA
CAACCCCTCGACCCACGCACCTCGCCCGTTATGGCCTCCCTCACCCCCGG
ACCCACCCGATGGGCGCTGTTATCCTATCGTACCGCGCCGGCTCTCTCCA
ACGAGCTCAACCGATTGGCCGAAAGACCGCCCGTCGGGATAGCGGATAGC
CACCAGGACGGTTTCAATCTTTAGCGCCTTCTTGCGTTTAAACTTAACTC
CTCTCGCGCGGGGGATTGGTGCACGGGCCGGCCGGCCAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig86:379433..379871+

>mRNA_S-ischiensis_contig86.20203.1 ID=mRNA_S-ischiensis_contig86.20203.1|Name=mRNA_S-ischiensis_contig86.20203.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=630bp|location=Sequence derived from alignment at S-ischiensis_contig86:379433..379871+ (Schizocladia ischiensis KU_0333)
ATGTTAATGTTCAACTGCTGTACTATACACAAGCAGCAGCCTGGGCGCTT
CCCCGCCCCCCCGCTTGTCGAGCTTCGCCATAGGCTCGCCTTGGGTGTTC
ACCAACTCGATACAATACTGTACGCTACAACCTCGGAGCCACCTCCAACT
ACCCCTCCTCGCTGCCACACCAACAACCCCTCGACCCACGCACCTCGCCC
GTTATGGCCTCCCTCACCCCCGGACCCACCCGATGGGCGCTGTTATCCTA
TCGTACCGCGCCGGCTCTCTCCAACGAGCTCAACCGATTGGCCGAAAGAC
CGCCCGTCGGGATAGATGTTAATGTTCAACTGCTGTACTATACACAAGCA
GCAGCCTGGGCGCTTCCCCGCCCCCCCGCTTGTCGAGCTTCGCCATAGGC
TCGCCTTGGGTGTTCACCAACTCGATACAATACTGTACGCTACAACCTCG
GAGCCACCTCCAACTACCCCTCCTCGCTGCCACACCAACAACCCCTCGAC
CCACGCACCTCGCCCGTTATGGCCTCCCTCACCCCCGGACCCACCCGATG
GGCGCTGTTATCCTATCGTACCGCGCCGGCTCTCTCCAACGAGCTCAACC
GATTGGCCGAAAGACCGCCCGTCGGGATAG
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