|
|
Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 931 |
| Cds size | 609 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817346.154177-UTR-S-ischiensis_contig86:350126..350446 | 1622817346.154177-UTR-S-ischiensis_contig86:350126..350446 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig86 350127..350446 - |
| 1695741044.6519556-UTR-S-ischiensis_contig86:350126..350446 | 1695741044.6519556-UTR-S-ischiensis_contig86:350126..350446 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig86 350127..350446 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817346.1766086-CDS-S-ischiensis_contig86:350446..350595 | 1622817346.1766086-CDS-S-ischiensis_contig86:350446..350595 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig86 350447..350595 - |
| 1695741044.6641366-CDS-S-ischiensis_contig86:350446..350595 | 1695741044.6641366-CDS-S-ischiensis_contig86:350446..350595 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig86 350447..350595 - |
| 1622817346.18818-CDS-S-ischiensis_contig86:352186..352279 | 1622817346.18818-CDS-S-ischiensis_contig86:352186..352279 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig86 352187..352279 - |
| 1695741044.6747673-CDS-S-ischiensis_contig86:352186..352279 | 1695741044.6747673-CDS-S-ischiensis_contig86:352186..352279 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig86 352187..352279 - |
| 1622817346.1994529-CDS-S-ischiensis_contig86:352481..352608 | 1622817346.1994529-CDS-S-ischiensis_contig86:352481..352608 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig86 352482..352608 - |
| 1695741044.694537-CDS-S-ischiensis_contig86:352481..352608 | 1695741044.694537-CDS-S-ischiensis_contig86:352481..352608 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig86 352482..352608 - |
| 1622817346.2116516-CDS-S-ischiensis_contig86:354149..354389 | 1622817346.2116516-CDS-S-ischiensis_contig86:354149..354389 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig86 354150..354389 - |
| 1695741044.7097902-CDS-S-ischiensis_contig86:354149..354389 | 1695741044.7097902-CDS-S-ischiensis_contig86:354149..354389 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig86 354150..354389 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig86.20200.1 >prot_S-ischiensis_contig86.20200.1 ID=prot_S-ischiensis_contig86.20200.1|Name=mRNA_S-ischiensis_contig86.20200.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=203bp
GTRPVRVPLQWPAWEKRSSSSSSSLPPSLEVAVEGVSPQQEQQQAQEAHL
FPVDILVYCTDRKLLLSDVSIVVSRSAAIQLAKEFAGVEWVATHRVATFD
PLSSTSRLFFVEGGKKNPGENRGDLVAYARAGRHSFLQCPGARPGAPTGP
HRSGDGCGQRHDLRTDIRTRRGVTVDKTPAPPAAVQAAREMNLFYVTCAD
VM* back to topmRNA from alignment at S-ischiensis_contig86:350127..354389- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig86.20200.1 ID=mRNA_S-ischiensis_contig86.20200.1|Name=mRNA_S-ischiensis_contig86.20200.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4263bp|location=Sequence derived from alignment at S-ischiensis_contig86:350127..354389- (Schizocladia ischiensis KU_0333)
GGCACTAGGCCGGTGCGGGTGCCGCTGCAGTGGCCGGCGTGGGAGAAGAG
ATCATCCTCCTCCTCCTCCTCCTTGCCCCCCTCCCTGGAAGTGGCTGTGG
AAGGCGTTTCACCGCAACAGGAGCAGCAGCAAGCGCAGGAGGCTCACCTG
TTCCCCGTGGACATCTTGGTGTACTGCACGGACCGCAAGCTGCTGCTGAG
CGACGTGAGCATCGTGGTGTCGCGCTCGGCGGCCATCCAGGTAAGGGCCG
TTGAGTTCCTGATGGGAGGTAAAGTGGCGTGTTCTGTGCGAAGAAGCGGC
GGTTGAAAATTTGGGTGGTCGTACTTCGTACTGGCTCTTCATCGTTGGGT
GATATTCCAGCAGTTTATGTACTCGAGTAGTAATTGTTGATTCCCAAATA
TACAAATATATATACGAGTATACTAATACAATCGACCCGCACAGTTGGGC
GTGTTGAAAACAATCAGGTCCGGCACTTCCGCTTGCTACATACATACTCG
TGCATGTGTTTGGCCGATGGCCGAGGGGTGGGTCGTTCATCCGCAAAAAC
AGAAGAGGTAGAAGGAGAAGAAGAAGAAGAAGAACAAGAAGAAGAAGAAG
TGAACAGAAAACGCGGATGCACCTGTAAATTCGCACTAGTGGCATGAGGC
ATAGCGCATGTTGCCGTCTTTGAGAACCGCCCCGCGGTAGGTTATTTGCA
CACCCAAGCCTGGGGAACAAGGTGAGGACCAAGAGCAAAAACACGCATGC
TTCCAAGTGGGTATGCTGCACTCTACCGTCTTTTTGGTGTACTCTACTGT
CTTTACGGTATTCTTCGAAGTACTTACTGCCTACCGTGCTGTTCCCATTA
GAGGAATACTTTGTTGTTCCTATTACTGCTCACATGTTGTTCCTATTGTG
CTTCATGGCAATGTCTTGCGCTGGGGCTTCAAGTACCGCCCACCTCGGAA
GAGGCACTTGCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTCCGTCGTTGT
CCCCTCTCCTCCCAGATTCGTGCCTGCGAGCCCCCATTGGGGCGGCTGGG
ACAGACAGTTGGACTCTGCGGGGCTGTGCCATTTCTGCCTGCTTTGACCT
GGGGACGCTCGGACCTCGGTCAGGTGGCCGCCCCAAATCCGCTATGTAGA
TAGGTAGGCCGGTGGGCGGCCTGGGTGCCCCCCGGGGGCCGCCCGTGTAC
TTGTGGGTGTTTGTTGGATCAACACGCCGAGTGCGATCGGCGCTTTTAAC
TTTTTGGTGCCCCGATGTACAGAGTTATATCAGCATGGGCCGGGTGTTCT
TGTCGAATAAATACCGCATGCCTGTGAGGACGAGCTGTCCGGCCCGTGGC
GGCACGTTTTTGGAGAAGCGGGGGGGTTCGTTGAACTGTCGGAGGGCAAA
CCCAAAGTTTCGACGAAGTATACACAGTACGAGTAGTGTACTTAGTAGTC
CTCAAATGGTTTGACTATGTATGCATTGTACTTACAGTCCATGGCTACAT
AGCTGCTCTTCTCGGAGGTCAAAACCGAAGGTTTGACTCGGGGCTGTTGG
CAATGCACCAAGGTGTTGTCGCAAGACAAGCCGACGAGTAGAGCTCTACA
CATGCTACGAAGTATGATATGCTACGAAGTATAGTATATTGAGCTCTATG
TTAAAATTGGGGACCAACTGGCTATTTCATTACTTGTACTACATTAAATT
GGTTCCCGGCCCGCTTGAGCTTATCTCGCAAGTGCGCATCACTGGACGCA
CCCCCCACCCTTGTCGCGATGTCTCCACCAGTTGGCGAAGGAATTCGCTG
GTGTGGAATGGGTCGCCACGCACCGTGTGGCAACGTTTGACCCCCTCTCT
TCCACGAGTCGGCTCTTTTTTGTGGAAGGAGGAAAAAAGAACCCAGGGGA
AAATAGAGGTGACCACCCTACTTTTGCGGGTGCCGGGCCCCCGCACGGAA
GCCCGTCTTGTACAGCCGAAAAAGAAAACCAAATGATGTGATGTGATGCA
TGCTCTACTTCACTGTAGTTCAACATCAAATCACATCACATGATGTCAAA
GAAGCCCGTCCTCCACGCGGCTTGGGCTGTTTGTTCTGTTTGCCTTGTCT
GTCTGTGCAGGCGACCTCGTCGCGTACGCACGGGCGGGACGCCACTCTTT
CCTTCAGTGTCCTGGTGCGCGACCTGGAGCACCTACAGGCCCTCATCGAT
CAGGTACCACCTACTCGAGTATATACTCGTATACACTAGAGTACGTAGTA
GTAGCACATATATGCACCTGGTATTATTTTATATGGTAGATATATTTCGA
CCTTGTGCTTTTTACACGCATGCTCTACAGTAGTTAAACACACCTCAACA
TCACGTGGGTGATGATAATATATATATGATGTACTTCGAAGTATATATTT
GCTGTTTTCGATGCGCATACTTCGTATTTATGTTCATTATTGTGTGGCTT
GAGAGTTGCGGGGCCTGTCCCAAAACCTTACGTGGGACCTCACCAGAAGC
CCGTATGGTCGCTCGCAGGGCACAAAAAGCAAGCAAAGAACCAACACACA
GGGCCAGTGCAGGGGGGGGCTCTCTTGTGTCGCATTGCGGGACGTGCCTG
CTGGAGCGTGCTCACGTTCAAATAGCCAAGCAGTAGCAGCGAAAGCGTGA
GCGTGATTTTCCGAGAGATGGTGATGTGATGTGTTGTGATATGATGTCCA
TGCTGACCTTGCTTCAAGTGGTACTCGTACATTACAGAGTACACACCACA
TTGCATCACATCACACAGTAACACATAACAGAACATCTCATCACCTGACA
TTATATTTCTCGGAAAGACCTCCGGGCCCCGGTAATTGGCACGGGGGGCA
AGAGCTCTCCGACAAACACGGCTACAAGTGTACTACAGTACAGAGCAGAT
ACAATAGCATCAGAGTTTGCAGACGCTTGGCTAGTAAGTAGTGTTTTTAC
ATGGCGCAGCTTTGCGCAGTGCATTTCGGTGTTCGCGCGAGGAAGACAAC
AATCTCCTCACAAACCTGGCCATCAACTTTGTCCGTGATATCCGACCGCG
AAGCGTTAAATCCTTGGGCCGAACTGGTTGAGAATGACCTCGTCCTAGCC
GGTGGCGGCTCTACATAAAAACAACGCGCTGGCTTGGATTAGCGCTAATG
TGTACCTCTCCATTTCACAATGGCATATACTCTCGGGCATACTTCAAGTA
CACAAGTACTGGTAGTTTCGCAGAACGGGGTTCGATGAACCCAAGCACAT
TCGTAAAGAAACTGACTTCCGAAATCCCTACTAGTAGTAGTTCAGAGAAT
GAGTTTCGATGACACCAAGTACATTAGCGAGGAGGCAGAATTCGCACCAC
CCCTAATTATGTAGTTAAGGGACTACAGTACAGTACGTATGTTTCCAAGT
ACTCGAGTATAGCATGTACTACATGTGTACTCACGTTGTGCTTGCCGTAG
CCCCGAGACCATTGACCGCATGCCTCGACTGAGACGGATGTGATGCGATG
CGATGCGGCGTGTACTCTAAATTGATGTACCTTAGTTTGGCATGGCATCA
CATGACATTGCTACAAGTACTCGACCGAGACGGAGCCGGCCCCCTCCCGA
CCTGGGTCATGTCATGGGCACTGAGTTTCAGCGCTTAGCCGAGACACAAT
GGTTTTAGCAGCTTTGAAGTGTTGTGCTGGCCCGGGACCTGCAGCCAAGC
TAAGACAACGCTCATTGCCAAGGCGGCTCTTTCCTTTTCTCCCTGTCTCT
CTTTCCCTCCCTCCCTCCCCACCCGCCCTTGGCCCCTCTCTCAGGTGATG
GGTGTGGACAACGTCATGACCTGCGAACGGACATTCGGACGCGCCGGGGT
GTGACGGTGGACAAAACGCCCGCTCCACCTGCGGCCGTCCAAGCTGCGCG
CGAAATGAATTTGTTCTACGTTACATGCGCTGATGTGATGTGATGCGATG
CAATGCGATGCGAAACCACTGACTAAGTGCAATAAAGAACACATCGCCGG
CGAAGGCGTGGCACGTCACGGTGCCGGCCTGAGTGTCCCGCCGACTTGGA
ATTGACTGGACTGGGCGTTTTTGAGAACCTCCAGGCATCCCCCATCGGGG
GAGGCGCGGGGTGTGTGTGTGTCTAGTGGGCAGGGGAGTCGTTGCACCCC
GGCTTGCATGGCATTGTTACATATTTCTTGTACGAACACTTGCCTGGCAG
CGGGGTGCCGGGTCAGGTACCGGCCGCCGGAGAACCCCGCCGCATCACTC
CTTTCTGCCTGGA back to topCoding sequence (CDS) from alignment at S-ischiensis_contig86:350127..354389- >mRNA_S-ischiensis_contig86.20200.1 ID=mRNA_S-ischiensis_contig86.20200.1|Name=mRNA_S-ischiensis_contig86.20200.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1218bp|location=Sequence derived from alignment at S-ischiensis_contig86:350127..354389- (Schizocladia ischiensis KU_0333)
GGCACTAGGCCGGTGCGGGTGCCGCTGCAGTGGCCGGCGTGGGAGAAGAG
ATCATCCTCCTCCTCCTCCTCCTTGCCCCCCTCCCTGGAAGTGGCTGTGG
AAGGCGTTTCACCGCAACAGGAGCAGCAGCAAGCGCAGGAGGCTCACCTG
TTCCCCGTGGACATCTTGGTGTACTGCACGGACCGCAAGCTGCTGCTGAG
CGACGTGAGCATCGTGGTGTCGCGCTCGGCGGCCATCCAGGGCACTAGGC
CGGTGCGGGTGCCGCTGCAGTGGCCGGCGTGGGAGAAGAGATCATCCTCC
TCCTCCTCCTCCTTGCCCCCCTCCCTGGAAGTGGCTGTGGAAGGCGTTTC
ACCGCAACAGGAGCAGCAGCAAGCGCAGGAGGCTCACCTGTTCCCCGTGG
ACATCTTGGTGTACTGCACGGACCGCAAGCTGCTGCTGAGCGACGTGAGC
ATCGTGGTGTCGCGCTCGGCGGCCATCCAGTTGGCGAAGGAATTCGCTGG
TGTGGAATGGGTCGCCACGCACCGTGTGGCAACGTTTGACCCCCTCTCTT
CCACGAGTCGGCTCTTTTTTGTGGAAGGAGGAAAAAAGAACCCAGGGGAA
AATAGAGTTGGCGAAGGAATTCGCTGGTGTGGAATGGGTCGCCACGCACC
GTGTGGCAACGTTTGACCCCCTCTCTTCCACGAGTCGGCTCTTTTTTGTG
GAAGGAGGAAAAAAGAACCCAGGGGAAAATAGAGGCGACCTCGTCGCGTA
CGCACGGGCGGGACGCCACTCTTTCCTTCAGTGTCCTGGTGCGCGACCTG
GAGCACCTACAGGCCCTCATCGATCAGGCGACCTCGTCGCGTACGCACGG
GCGGGACGCCACTCTTTCCTTCAGTGTCCTGGTGCGCGACCTGGAGCACC
TACAGGCCCTCATCGATCAGGTGATGGGTGTGGACAACGTCATGACCTGC
GAACGGACATTCGGACGCGCCGGGGTGTGACGGTGGACAAAACGCCCGCT
CCACCTGCGGCCGTCCAAGCTGCGCGCGAAATGAATTTGTTCTACGTTAC
ATGCGCTGATGTGATGTGAGTGATGGGTGTGGACAACGTCATGACCTGCG
AACGGACATTCGGACGCGCCGGGGTGTGACGGTGGACAAAACGCCCGCTC
CACCTGCGGCCGTCCAAGCTGCGCGCGAAATGAATTTGTTCTACGTTACA
TGCGCTGATGTGATGTGA back to top
|