mRNA_S-ischiensis_contig86.20191.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig86.20191.1
Unique NamemRNA_S-ischiensis_contig86.20191.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig86.20191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig86contigS-ischiensis_contig86:167771..169728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size655
Cds size486
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig86.20191.1prot_S-ischiensis_contig86.20191.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig86 167771..169560 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817345.8348515-CDS-S-ischiensis_contig86:167770..1679211622817345.8348515-CDS-S-ischiensis_contig86:167770..167921Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 167771..167921 -
1695741044.4294538-CDS-S-ischiensis_contig86:167770..1679211695741044.4294538-CDS-S-ischiensis_contig86:167770..167921Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 167771..167921 -
1622817345.8457289-CDS-S-ischiensis_contig86:169225..1695601622817345.8457289-CDS-S-ischiensis_contig86:169225..169560Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 169226..169560 -
1695741044.44437-CDS-S-ischiensis_contig86:169225..1695601695741044.44437-CDS-S-ischiensis_contig86:169225..169560Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 169226..169560 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817345.85588-UTR-S-ischiensis_contig86:169560..1697281622817345.85588-UTR-S-ischiensis_contig86:169560..169728Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 169561..169728 -
1695741044.4531763-UTR-S-ischiensis_contig86:169560..1697281695741044.4531763-UTR-S-ischiensis_contig86:169560..169728Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 169561..169728 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig86.20191.1

>prot_S-ischiensis_contig86.20191.1 ID=prot_S-ischiensis_contig86.20191.1|Name=mRNA_S-ischiensis_contig86.20191.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=162bp
MNCKRPPTDALAAREGQNRAKRGMASSRGCYLPAGAILVAVAAICPRGGP
GVDAFQGPVGARTASGHGEIDSLSSAPVPHGRASHRMGVWGLAAVACRCE
AGARQHWRAAGGSTAWGRAACNCRRVTDVTDSAVAGRNRRATALASSVSD
QEAAVPGPGVVP
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mRNA from alignment at S-ischiensis_contig86:167771..169728-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig86.20191.1 ID=mRNA_S-ischiensis_contig86.20191.1|Name=mRNA_S-ischiensis_contig86.20191.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1958bp|location=Sequence derived from alignment at S-ischiensis_contig86:167771..169728- (Schizocladia ischiensis KU_0333)
GTGGAGAGACAGCACAAGCACCCAAAACGGGCCGGAAGCCACGCGCGAAC
AGGGGGCTTTCCCCGATACGTTATCGCCTGCTGCGAACGACGGCGCTGAC
GGCGCCCAACCGGGGGACTCTACTCCCGCGCTGGAACACCACTTGCAACG
CCAAGTGAAGTTAATGTCATGAACTGCAAAAGGCCGCCGACGGACGCCCT
GGCGGCGAGGGAGGGACAGAACCGCGCGAAGAGGGGGATGGCGAGCTCCC
GAGGATGTTACTTGCCCGCGGGAGCGATTCTCGTGGCCGTGGCGGCCATC
TGCCCCCGGGGTGGGCCCGGCGTGGACGCCTTCCAGGGGCCTGTGGGCGC
GCGCACCGCGAGCGGCCACGGCGAGATTGATTCGCTCTCTTCTGCACCAG
TGCCCCACGGGCGTGCAAGTCACCGCATGGGAGTTTGGGGGCTCGCAGCG
GTAGCCTGCCGTTGCGAGGCGGGGGCGCGGCAGCACTGGCGCGCTGCTGG
CGGGTGAGAAACAGGGTTGGCACGTAACCCCTAAGTGGTGCCCTTTTAGG
CCCTTAATTAGGGGTAGTTAGACCTAAAATGAAGGCTAATTAGGCCTTAA
TTAACCCCTAAGTGCCAACCCTGGGTGAGAAAGGCAGGGTCGGCGTATCG
AGGGATAAGATACCACAGCGGTCCCATTTTTTTATTGAAAATACAAATAC
ATTTATCATCGTACGGCTAATCTAGACGGTGAACCATTCATGTCTTGTAT
GGTAGCGCGACCCCCACATGTACTACTACTAGTTGTACAACTGTGCCTGT
GAAGCAGGTGGTTGTGATTCATATACATTGTAACGAGGTACAATCGCACG
TGTGTGCGATTGAGTGTTCTCGTATTTGTATTATAAGGAACAACACGGGG
CGAGGTGCAGGCCACGTCACTAGAGACCTCAGCAGTTGCCCTTCCTTAGC
TCGCCAGGGGAAATTTGCGCGGGGAAAGGGAGATGAGGAGGGGGAGTGGG
CAGGGAGGAGAGGGAGGAGGAGGAGGGGGAGGAGGAGGACTTGTACTAGT
AGTTGTTTCATTTGGGAATTGAATGTTCTTTTATTAGTGATTCTCACATC
AAGGAACGCAGTGGTTCTTCCTGTAGGCCCACTCGGTGGGAAAACATGTG
TCGATGGCGTTGTTTTCAATTTAGTGGCGGCAATCCATTCGGGTCGACAC
GTCGCAGTACCGAACGTCGAAGCCAAAGATCACTTTCTACCGAATATCGC
CCATACGCGGGGATGGGGGGGGGTATGGACTTGTCCACCCCTCCGCCTCT
GGCGGGGGGGTGGCCACTCCCTCCCAACCTGGCCCTGCCAGGGGAGGGAG
GGGTCGTGCTCCATCTCGACCGAGGCGCGTGGTCATGGTCTCGGGACTAC
GGCAAGCACCACATACATATATACTACTGTACGTACTGTAGTACATATGC
GATGTGTTCGATTTGTCCTGGTTCCAATGCACTCTATGGCTCTTTGAGGT
TGGTCCCTCGTGTGTTGCTGAAGTGACTGGGCTTTGCCGGTACGTGCTAA
ACGTATTCGTTGTTGCGAAGAATATTTATGTGAAGCACGGCCGCTATAGC
GCAGGCTACGGCCAGCAAGTTATCGAAATATGGAAGCGGCATGGACACCA
TAATGCCAGGAATTCTCCGAATGCGCTGTACCCCCGCTACCTCAAACCAC
CGCCATAACCATCTCTGACACACCACCACCACCACCACCACCACCACCGC
CACCACCACCACGGCCAACACCACCGCCTCCCCTCCGTGAACCCCATGTG
GCCGCAGCTCCACCGCCTGGGGGCGCGCCGCCTGTAACTGCCGCCGTGTA
ACCGACGTAACCGACTCTGCGGTGGCGGGGCGAAACCGCCGTGCAACTGC
CCTGGCGTCGAGCGTGTCGGACCAGGAGGCGGCGGTGCCCGGGCCTGGGG
TGGTGCCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig86:167771..169728-

>mRNA_S-ischiensis_contig86.20191.1 ID=mRNA_S-ischiensis_contig86.20191.1|Name=mRNA_S-ischiensis_contig86.20191.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=972bp|location=Sequence derived from alignment at S-ischiensis_contig86:167771..169728- (Schizocladia ischiensis KU_0333)
ATGAACTGCAAAAGGCCGCCGACGGACGCCCTGGCGGCGAGGGAGGGACA
GAACCGCGCGAAGAGGGGGATGGCGAGCTCCCGAGGATGTTACTTGCCCG
CGGGAGCGATTCTCGTGGCCGTGGCGGCCATCTGCCCCCGGGGTGGGCCC
GGCGTGGACGCCTTCCAGGGGCCTGTGGGCGCGCGCACCGCGAGCGGCCA
CGGCGAGATTGATTCGCTCTCTTCTGCACCAGTGCCCCACGGGCGTGCAA
GTCACCGCATGGGAGTTTGGGGGCTCGCAGCGGTAGCCTGCCGTTGCGAG
GCGGGGGCGCGGCAGCACTGGCGCGCTGCTGGCGGATGAACTGCAAAAGG
CCGCCGACGGACGCCCTGGCGGCGAGGGAGGGACAGAACCGCGCGAAGAG
GGGGATGGCGAGCTCCCGAGGATGTTACTTGCCCGCGGGAGCGATTCTCG
TGGCCGTGGCGGCCATCTGCCCCCGGGGTGGGCCCGGCGTGGACGCCTTC
CAGGGGCCTGTGGGCGCGCGCACCGCGAGCGGCCACGGCGAGATTGATTC
GCTCTCTTCTGCACCAGTGCCCCACGGGCGTGCAAGTCACCGCATGGGAG
TTTGGGGGCTCGCAGCGGTAGCCTGCCGTTGCGAGGCGGGGGCGCGGCAG
CACTGGCGCGCTGCTGGCGGCTCCACCGCCTGGGGGCGCGCCGCCTGTAA
CTGCCGCCGTGTAACCGACGTAACCGACTCTGCGGTGGCGGGGCGAAACC
GCCGTGCAACTGCCCTGGCGTCGAGCGTGTCGGACCAGGAGGCGGCGGTG
CCCGGGCCTGGGGTGGTGCCGCTCCACCGCCTGGGGGCGCGCCGCCTGTA
ACTGCCGCCGTGTAACCGACGTAACCGACTCTGCGGTGGCGGGGCGAAAC
CGCCGTGCAACTGCCCTGGCGTCGAGCGTGTCGGACCAGGAGGCGGCGGT
GCCCGGGCCTGGGGTGGTGCCG
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