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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 231 |
| Cds size | 201 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817345.5260804-CDS-S-ischiensis_contig86:110674..110810 | 1622817345.5260804-CDS-S-ischiensis_contig86:110674..110810 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig86 110675..110810 - |
| 1695741044.239592-CDS-S-ischiensis_contig86:110674..110810 | 1695741044.239592-CDS-S-ischiensis_contig86:110674..110810 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig86 110675..110810 - |
| 1622817345.541166-CDS-S-ischiensis_contig86:112875..112940 | 1622817345.541166-CDS-S-ischiensis_contig86:112875..112940 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig86 112876..112940 - |
| 1695741044.2509587-CDS-S-ischiensis_contig86:112875..112940 | 1695741044.2509587-CDS-S-ischiensis_contig86:112875..112940 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig86 112876..112940 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817345.553694-UTR-S-ischiensis_contig86:112940..112968 | 1622817345.553694-UTR-S-ischiensis_contig86:112940..112968 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig86 112941..112968 - |
| 1695741044.2652876-UTR-S-ischiensis_contig86:112940..112968 | 1695741044.2652876-UTR-S-ischiensis_contig86:112940..112968 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig86 112941..112968 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig86.20186.1 >prot_S-ischiensis_contig86.20186.1 ID=prot_S-ischiensis_contig86.20186.1|Name=mRNA_S-ischiensis_contig86.20186.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=67bp
MASSAGKKSLEAGVGGTLSVSSCAPTTPSEAGCSANSGSGAYEPPQHHHH
HAHSSAAASVAAAAAAA back to topmRNA from alignment at S-ischiensis_contig86:110675..112968- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig86.20186.1 ID=mRNA_S-ischiensis_contig86.20186.1|Name=mRNA_S-ischiensis_contig86.20186.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2294bp|location=Sequence derived from alignment at S-ischiensis_contig86:110675..112968- (Schizocladia ischiensis KU_0333)
GGAGCAACTGGCAGGCCAGCGTGGGCTCATGGCGTCGTCTGCGGGAAAGA
AATCCCTCGAGGCGGGGGTTGGTGGCACCCTATCGGTCTCCAGGTAGGTG
TTATTGGGGTATCAGGGCCGCTTGATGTGCGATACCCGTCGCGGCGGGGC
TCCGCGGGCGCTCCAAAGTGGAGCCTGCGCAGTTTTGAAATCGGAGATGG
GTGTGGACGCCACAGGCATCTGTGCAATTCGACAAAGGCATTATAAGGCA
GGCACATTGAACTCCTCTGAGTTGCGAAAAAAAGAAGATGAAAAGAAACT
TACTATGTACTAGTAGTAGTACCTGTGCAGCGACCCCCTGCACGCGGTTC
GGTACCAGCCCAAGGGCAAACAACAAACAACTAGGACATGGCTATGTCGG
TACGGTATCGGTCCACCGGCCCCCAGAAACACCGGCCGTTGCTCTACTTA
GCCAGTTTCCCTCTTGTCTCCTTGCAATCTGTGCCCACGCTGTAACCGCT
TGGCCAGCATCTTTTTTTCTCCTGTGTGCGTGGAAATATATCTGGATCCG
TTGTACTTATTGCCGCGAAGACAAAACCCAGAGACAGTATCAACATGCCG
ACACCCTTCCTCCAAGTTCGGGTTCAAACAACACTGCCGCGGAAATGGGC
CCCTTCACGCTTCTCTATTTAGGCGCCGTTTACGATCCCCGGTCCCCAAT
CCTATTCCCGTCCTATTGTTGGCCTGTTGAGGAGAGCCGTCACCGGTCGT
TTCGGTGACCCGGAATAGGAGTGAGCGTCGAGGGTGCTTCATGACACCCC
CTGCCCTCGATGTGCACCGGCCCAACGGTCCCCGATATCGCCGGGCGCCG
TACATTCGAGCAAGCGAAATCGGATCGGATCGGAATTTATATAGGACCGA
ACAGTGCACCTCAAGAGGTGTCCCTATTGTAGGAAATGGGATTTTTTTGT
GTTGCGCCATCCTATGTTGTATTGAACCCGCCTCGGGGATTCGTGACCGT
GCCGGTCCTATTTTGGCCTATAAATTTCCTAGATCTCCTTCGAAGCACAA
GCATAAGATCGGGGGATCGTAAACCGGGCGTTCACGCATGTAAATTGCAA
CGAGGTACAATCGCATGTGTGTGCGATTGACTGTTCTCGATATTAGTAGT
TGTTTCGTTTAAGCATTGGATGTTCTTATATTAGTGATTATCACATCGCA
AACGGGGCCTTGATTTTGTACATAGTTGAGCAGCGTGACCTTTCTTGGTG
GCCTTGCGACGACCTTTCGGATTCTTCCACAAGATTTTGCTCTGTTGATG
AAAACCGCTGCCGAGGTCGCGAGGACAATGGTCTCAGGGCTGCGGCAAGC
ACAGCGTGGACAATAGGTAGTGCAATTTCATTTATCCCAAAGTTAGCCGA
CAGCCCTATAAGTTGAAAATTCGGGTTTTCCCTCCGACCGGAGTAGCTTG
TTTTAACCATGGACTCATGCATCCCAACTAGGCCGGGACGGAGCATGTTT
GCACTGGCCAGGCCGCGCACTGGCCAAGCCTGGATTGCCGTGATGCCTTG
GCGTCGGCAAGCCGGATGAGGGGCCGCTCGCTAGACAAAGCGTAATAGCC
TTCGGCAAGTACTGTGAGTCTCTTTGCAAGTTGCTCTTGGGCGCACCCTA
ACGGCCACGGGAGGAACAAGCGGTAATTATGATTGATTCAGACCTCTAGG
TCGCCAGACGTTGCCCCTGCCAGCATATATTCAACTGTACAGTAAATACT
ACTGTATGTAGTCTGCTTGAGTACTGTACTCACGGTGTGCTTGCCGTAGT
CCCGAGACCATTCACCAATGCAGTACTCGCTGAACTGCCAAAAATCCATA
CACGCGGTCCGGGGTGTGGGCAGAAACGAACCACACAGCCTCTTGATCCC
GCGGTTTCCCTCCCTCCCCCTCTCCGCCCCCCTCCCTCGCCGCACGGCAC
CTGCCCGTCAGTGATGGAATATCTAAGCAAATCAACTAATTTATCGACGG
CACTGATCTATATATCTATCGATAGATGATATTAGATAGTTTGACCCACA
CTAAATCCAAGTACAAGTAGCTAGTAGCGCCACCCACAAATTCAGTCGAA
CCCGATAACTATCTGCTGATCGATATTCCATCACTGCTGCCCGCCACCAC
CGCCGCAGCTGCGCCCCCACGACACCATCGGAGGCGGGGTGCTCCGCAAA
CTCGGGTAGCGGCGCGTACGAACCGCCCCAACACCATCACCACCACGCGC
ACAGCTCTGCCGCCGCCTCTGTGGCTGCTGCTGCTGCTGCTGCT back to topCoding sequence (CDS) from alignment at S-ischiensis_contig86:110675..112968- >mRNA_S-ischiensis_contig86.20186.1 ID=mRNA_S-ischiensis_contig86.20186.1|Name=mRNA_S-ischiensis_contig86.20186.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=402bp|location=Sequence derived from alignment at S-ischiensis_contig86:110675..112968- (Schizocladia ischiensis KU_0333)
ATGGCGTCGTCTGCGGGAAAGAAATCCCTCGAGGCGGGGGTTGGTGGCAC
CCTATCGGTCTCCAGATGGCGTCGTCTGCGGGAAAGAAATCCCTCGAGGC
GGGGGTTGGTGGCACCCTATCGGTCTCCAGCTGCGCCCCCACGACACCAT
CGGAGGCGGGGTGCTCCGCAAACTCGGGTAGCGGCGCGTACGAACCGCCC
CAACACCATCACCACCACGCGCACAGCTCTGCCGCCGCCTCTGTGGCTGC
TGCTGCTGCTGCTGCTCTGCGCCCCCACGACACCATCGGAGGCGGGGTGC
TCCGCAAACTCGGGTAGCGGCGCGTACGAACCGCCCCAACACCATCACCA
CCACGCGCACAGCTCTGCCGCCGCCTCTGTGGCTGCTGCTGCTGCTGCTG
CT back to top
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