mRNA_S-ischiensis_contig86.20181.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig86.20181.1
Unique NamemRNA_S-ischiensis_contig86.20181.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig86.20181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig86contigS-ischiensis_contig86:90291..92057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size449
Cds size447
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817345.200674-CDS-S-ischiensis_contig86:90290..905731622817345.200674-CDS-S-ischiensis_contig86:90290..90573Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 90291..90573 -
1695741044.0271575-CDS-S-ischiensis_contig86:90290..905731695741044.0271575-CDS-S-ischiensis_contig86:90290..90573Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 90291..90573 -
1622817345.212603-CDS-S-ischiensis_contig86:91893..920571622817345.212603-CDS-S-ischiensis_contig86:91893..92057Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 91894..92057 -
1695741044.0398598-CDS-S-ischiensis_contig86:91893..920571695741044.0398598-CDS-S-ischiensis_contig86:91893..92057Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 91894..92057 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig86.20181.1prot_S-ischiensis_contig86.20181.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig86 90291..92057 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig86.20181.1

>prot_S-ischiensis_contig86.20181.1 ID=prot_S-ischiensis_contig86.20181.1|Name=mRNA_S-ischiensis_contig86.20181.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=149bp
MLNSRSRSRSRSWSGGHDDHRERNRSYDRDKDRGPEWDGGRRRSRGSPER
ARRDIFGRDIPPTGARPAPPKKSSGGGGGGDDAWARGALVGAKGHGQDTG
HNGGGGDAAGAGGVGTVISHVAVAGAQAVSVGKDHAAVGDASAGGGGGS
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mRNA from alignment at S-ischiensis_contig86:90291..92057-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig86.20181.1 ID=mRNA_S-ischiensis_contig86.20181.1|Name=mRNA_S-ischiensis_contig86.20181.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1767bp|location=Sequence derived from alignment at S-ischiensis_contig86:90291..92057- (Schizocladia ischiensis KU_0333)
ATGCTGAACTCTAGGAGCAGGAGCAGGAGCCGGAGCTGGAGTGGAGGGCA
TGATGATCATCGGGAGAGGAATAGGAGCTATGATCGGGACAAGGACCGAG
GTCCGGAATGGGACGGTGGGCGAAGGCGGAGTCGCGGGTCCCCGGAGCGC
GCAAGGAGAGACATGTGAGTTTGGTACGGCCGGCACTGTATTGACAGGAA
CAACACGGGGCGAGGTGCGGGCCACGTCACTAGAGACCTCAGCAGTGGCC
CTTCCTTATAGCTCACCAGGGGAAGTTTGTGTAGGGAAGGGGAGGTGGAC
GGGCTGTAGTTCTGTGCGATGCTTGTGCTGTATAGAGTGTGCTTGCGAGT
GGAAGTGTACGTCCTTGGCACTACGGTGTACACTACAGTATACACCATGC
TGTTGTGCGTTGTACGATTGCGCTTCCGGGCGTTTTGAACTTCTTCGTGT
GCTCTGGAACACGCCTACAGTACAGTATGTACTGCGAAGTACTGGAGACT
ACTGTAGTACGAGTGCAGTATCTGCTTCAAAGTAAGTTGAGTGCAGTGCA
TGACCGGTGGTCAGATCCCCACAGTAGGAAAACGAGGCCTCAAAATTGCC
ATGGGCTCAGAGAGTGGGAGGGCTCCAGCACACCCAAGGGGCTTAACGCA
GCCAAGGTATGCAGTTTCATTCTACCGCTTTGGCGGCAATTGTCGGCGGG
TTTTCTTTGCTGTTGCCGAGGTGACGAGCGCGATTCTCGCTGAGGTCTAC
GCAGCGCTTGCCTCTGTTTCTTCTTCCCTTTCTTTTGCTGAATACAGTTG
CAGGCCCTGGGGGGGCTTTCTGGGCTGATATGCACGATAAGGGAACGGTT
CGATAGAGCATGAAGTGTACTGTATCGTAGTCACAGGTACTTTGAAGGAC
TCGGTCTTGCCCGGAAATTGCAGGAAGAAGCCTCACTTCGGCACTACCGG
AAGTTAAACGTGTCTTGCTCTACCACGCGTAGTGTATGCTTTGATCTCAG
GTACTTCAAAGTACTTGGAAGTACTTCAAAGTAGGCTACAGTACTGTGGT
GGACGATGGACGACACTGTAGTATAGTGCACTGTATGTACAGTACAGTAC
AGAAGTGTTATTGGGAGTGTATGCGTTACGGGAGGGAGGGGTCCTGCTCC
GTCTCGACCGAGGCGCGTGGTCAATGGTCTCGGGACGACGGCAAGCACCA
CGTGAGTATATATAGAAGTACACATAGATATATGCGTTGCAAGAAACTCA
ACACACTGCATCAAGTACAGTACTTGCAGGGCCACTCCCCCGCCATGAGG
GGGGGGGTGATCGCTCCCTCCCACCCTGGCTTGCCGGCTGGAAGATTATC
GACGAGGGCTTGCAATCTAAGGGGAGGAATTTGTGACCTCCGGCCACCCC
CTTATCGCTCCCTCCCTCCCTGCCTGCCTGCCTGCCTCCCTCCCTCCCTC
CCTCCCACCCTTCTTTCGCTTTGTCTCCCAATAGTTTCGGCCGTGATATA
CCCCCCACAGGGGCCCGGCCCGCACCACCCAAAAAATCAAGTGGTGGCGG
CGGCGGCGGTGATGACGCTTGGGCGAGGGGCGCCTTGGTCGGGGCCAAGG
GCCATGGCCAGGATACGGGCCACAACGGGGGTGGCGGGGACGCCGCCGGC
GCCGGCGGTGTCGGCACCGTGATCAGCCATGTCGCCGTCGCCGGTGCACA
AGCCGTTAGCGTTGGCAAGGACCATGCTGCCGTTGGCGACGCGAGCGCTG
GCGGTGGCGGCGGCAGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig86:90291..92057-

>mRNA_S-ischiensis_contig86.20181.1 ID=mRNA_S-ischiensis_contig86.20181.1|Name=mRNA_S-ischiensis_contig86.20181.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=894bp|location=Sequence derived from alignment at S-ischiensis_contig86:90291..92057- (Schizocladia ischiensis KU_0333)
ATGCTGAACTCTAGGAGCAGGAGCAGGAGCCGGAGCTGGAGTGGAGGGCA
TGATGATCATCGGGAGAGGAATAGGAGCTATGATCGGGACAAGGACCGAG
GTCCGGAATGGGACGGTGGGCGAAGGCGGAGTCGCGGGTCCCCGGAGCGC
GCAAGGAGAGACATATGCTGAACTCTAGGAGCAGGAGCAGGAGCCGGAGC
TGGAGTGGAGGGCATGATGATCATCGGGAGAGGAATAGGAGCTATGATCG
GGACAAGGACCGAGGTCCGGAATGGGACGGTGGGCGAAGGCGGAGTCGCG
GGTCCCCGGAGCGCGCAAGGAGAGACATTTTCGGCCGTGATATACCCCCC
ACAGGGGCCCGGCCCGCACCACCCAAAAAATCAAGTGGTGGCGGCGGCGG
CGGTGATGACGCTTGGGCGAGGGGCGCCTTGGTCGGGGCCAAGGGCCATG
GCCAGGATACGGGCCACAACGGGGGTGGCGGGGACGCCGCCGGCGCCGGC
GGTGTCGGCACCGTGATCAGCCATGTCGCCGTCGCCGGTGCACAAGCCGT
TAGCGTTGGCAAGGACCATGCTGCCGTTGGCGACGCGAGCGCTGGCGGTG
GCGGCGGCAGTTTTCGGCCGTGATATACCCCCCACAGGGGCCCGGCCCGC
ACCACCCAAAAAATCAAGTGGTGGCGGCGGCGGCGGTGATGACGCTTGGG
CGAGGGGCGCCTTGGTCGGGGCCAAGGGCCATGGCCAGGATACGGGCCAC
AACGGGGGTGGCGGGGACGCCGCCGGCGCCGGCGGTGTCGGCACCGTGAT
CAGCCATGTCGCCGTCGCCGGTGCACAAGCCGTTAGCGTTGGCAAGGACC
ATGCTGCCGTTGGCGACGCGAGCGCTGGCGGTGGCGGCGGCAGT
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