mRNA_S-ischiensis_contig86.20179.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig86.20179.1
Unique NamemRNA_S-ischiensis_contig86.20179.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig86.20179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig86contigS-ischiensis_contig86:71492..73017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size460
Cds size459
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817345.1531367-CDS-S-ischiensis_contig86:71491..717031622817345.1531367-CDS-S-ischiensis_contig86:71491..71703Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 71492..71703 +
1695741044.0014794-CDS-S-ischiensis_contig86:71491..717031695741044.0014794-CDS-S-ischiensis_contig86:71491..71703Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 71492..71703 +
1622817345.164438-CDS-S-ischiensis_contig86:72770..730171622817345.164438-CDS-S-ischiensis_contig86:72770..73017Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 72771..73017 +
1695741044.0141606-CDS-S-ischiensis_contig86:72770..730171695741044.0141606-CDS-S-ischiensis_contig86:72770..73017Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 72771..73017 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig86.20179.1prot_S-ischiensis_contig86.20179.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig86 71492..73017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig86.20179.1

>prot_S-ischiensis_contig86.20179.1 ID=prot_S-ischiensis_contig86.20179.1|Name=mRNA_S-ischiensis_contig86.20179.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=153bp
MILRVRGVGVSRLVRGYGEPGPTIRRRARPLGGDNRAGSNCAPALAFPGR
GGARPPAPSPASTLASAWATRRLLTTTSSSSSSSSSSGTTPPPGGVKGMA
AGAPKAQGQQPPTETETDTADASGKVAGEVVRSDKGQPSQAQGGNTPSLK
SPP
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mRNA from alignment at S-ischiensis_contig86:71492..73017+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig86.20179.1 ID=mRNA_S-ischiensis_contig86.20179.1|Name=mRNA_S-ischiensis_contig86.20179.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1526bp|location=Sequence derived from alignment at S-ischiensis_contig86:71492..73017+ (Schizocladia ischiensis KU_0333)
ATGATCTTGCGGGTGCGCGGGGTTGGGGTATCCCGTCTTGTCAGGGGCTA
TGGCGAGCCTGGCCCCACGATCCGCCGCCGAGCACGCCCGCTGGGGGGGG
ATAACAGAGCAGGGAGCAATTGCGCGCCGGCGCTGGCCTTTCCTGGCCGA
GGGGGGGCACGTCCCCCGGCACCGTCCCCAGCCTCTACGTTGGCATCAGC
GTGGGCCACCAGGTTTGTCTGCAGTCGTCTGGCAACTTCATTGCAGTGTA
GGGCGTGGCGTGAAAGCAAGCTGCAGGTCAAAGCATATATGAAAGAAAGC
ATGGCATGGTGCAGCGAGCTGTTGGCAAAGCGTGAATACTTCGAAGCACA
ACTTTTTGCTGCAGGCCGTGGTGTGCAAGCAAGCGGCAAGGCATAGCATA
CAACTTCACTGTGGCTGCGGGGCACGGTCCGCAAGCAGGCTGTAGGTCAA
AGTGCAGAGAATGCGGTGGGGCTGCTGCTGAATCACCAAGTTGAGCAGAT
TCTCTGGAAGTGTGTGTGGAACGCTACTGTACAACTAGTAGATAGCATGC
GGAACTCGCTTGCAAGTATCACATGAAATATATATGTGTGAGGATATCAT
GAATAGCTATCCTGCTCGGGTGAGAGTCTCGCTGCGGCAGCACGATCTTC
ACCCAGTGTCGCATACCGCCGGAAAAAAAACTGAAAAGCGTATGGATGGC
AACCACAGCCACCATGCAGTACGTCATACAATCAGTCCAAAATCATCAAC
CCATGCCTCCTCAAAAATGTTGACCCAACTGTTTCCGGCTTAAGCACTTC
CGACCTTCACATGCGGTACATGAGAAGGCACGACATTGATACAATACAGT
GGCTCCCATGCTTTGCCCCGCCCGAGGCCCATGCGTCCCAATCCCCCGAC
ACAAACCCTTCCGCCGTCGGCTTTGAACATCCCCCCTTCCCTCCACCCGG
CTTTTATTGGCTGACTTGGCCCCTACATACTTAAGAGGCGTTGATGCGGT
CAGCACACCTGCAGGCCGAAGGACATTATAGGAAACAGTACTTGAAGCAC
TGCAAAGTATTTTTTAGGGGCCAACTTGGGTGTTCTCTTACAGCTTTGCT
CCTGCTAGCTTACAATGGAGTAGATGCATCTATTACAGTACATGTACGAC
TTGGAAGTGTATACTAGTAAATGCAATTAGTGGGCACCTTGGCACGCAGC
ACTCGCGCGCTGCGTTGAGTATGCTCAGACCCCAACGGGCCCCACCCCCT
CACCCGTGCTTCCGCGGGGCTCCTGGCAGGCGTTTGTTGACAACAACGTC
ATCATCATCATCATCATCATCGTCTTCTGGGACAACCCCACCACCCGGTG
GAGTGAAAGGCATGGCGGCAGGAGCACCAAAAGCCCAAGGACAACAACCC
CCAACAGAGACAGAAACAGACACAGCAGACGCGTCGGGCAAAGTTGCCGG
GGAGGTTGTGCGCAGCGACAAGGGCCAACCGTCACAAGCGCAGGGTGGGA
ACACGCCTTCCCTCAAGTCGCCACCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig86:71492..73017+

>mRNA_S-ischiensis_contig86.20179.1 ID=mRNA_S-ischiensis_contig86.20179.1|Name=mRNA_S-ischiensis_contig86.20179.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=918bp|location=Sequence derived from alignment at S-ischiensis_contig86:71492..73017+ (Schizocladia ischiensis KU_0333)
ATGATCTTGCGGGTGCGCGGGGTTGGGGTATCCCGTCTTGTCAGGGGCTA
TGGCGAGCCTGGCCCCACGATCCGCCGCCGAGCACGCCCGCTGGGGGGGG
ATAACAGAGCAGGGAGCAATTGCGCGCCGGCGCTGGCCTTTCCTGGCCGA
GGGGGGGCACGTCCCCCGGCACCGTCCCCAGCCTCTACGTTGGCATCAGC
GTGGGCCACCAGATGATCTTGCGGGTGCGCGGGGTTGGGGTATCCCGTCT
TGTCAGGGGCTATGGCGAGCCTGGCCCCACGATCCGCCGCCGAGCACGCC
CGCTGGGGGGGGATAACAGAGCAGGGAGCAATTGCGCGCCGGCGCTGGCC
TTTCCTGGCCGAGGGGGGGCACGTCCCCCGGCACCGTCCCCAGCCTCTAC
GTTGGCATCAGCGTGGGCCACCAGGCGTTTGTTGACAACAACGTCATCAT
CATCATCATCATCATCGTCTTCTGGGACAACCCCACCACCCGGTGGAGTG
AAAGGCATGGCGGCAGGAGCACCAAAAGCCCAAGGACAACAACCCCCAAC
AGAGACAGAAACAGACACAGCAGACGCGTCGGGCAAAGTTGCCGGGGAGG
TTGTGCGCAGCGACAAGGGCCAACCGTCACAAGCGCAGGGTGGGAACACG
CCTTCCCTCAAGTCGCCACCAGCGTTTGTTGACAACAACGTCATCATCAT
CATCATCATCATCGTCTTCTGGGACAACCCCACCACCCGGTGGAGTGAAA
GGCATGGCGGCAGGAGCACCAAAAGCCCAAGGACAACAACCCCCAACAGA
GACAGAAACAGACACAGCAGACGCGTCGGGCAAAGTTGCCGGGGAGGTTG
TGCGCAGCGACAAGGGCCAACCGTCACAAGCGCAGGGTGGGAACACGCCT
TCCCTCAAGTCGCCACCA
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