mRNA_S-ischiensis_contig85.20176.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig85.20176.1
Unique NamemRNA_S-ischiensis_contig85.20176.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig85.20176.1 vs. uniprot
Match: A0A383VEJ4_TETOB (Integrase catalytic domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VEJ4_TETOB)

HSP 1 Score: 192 bits (487), Expect = 9.320e-51
Identity = 128/376 (34.04%), Postives = 189/376 (50.27%), Query Frame = 1
Query:   13 EPSTTREALAGPDADKWQEVMDKELQGLWNKGAFSDKPAPPDRKPVKTHYV---------------------GFTQQQDVDFFQTFSYIFGLDVMRLVLATAACHGWAIHSLDFTQAYLNASLQEDIWLKLPDGHI-------VKVNKVLYGLNQSALEWYKELRSTILGEGWSTSANDECLYYYR-SEDGGVAVLLTYVNDTAFTGDYDEEIKRMRDTLLSTYEGQDWGVPDQLLGVRITTDETGIILDQLLYTRSIVTE-GMGSLDLRITTSLLDPGVDLSARRDDEEELDCKLYPYANILGKLMFLAGMTRSDLASSVWALGCRAASPCMRHWRGLQHVLRYLTGTLDVCIHYAANTDSNDEQVLIGYSDSDW 1050
            EP   +EA + PDA  W + MD E+QG+ + G +     PP  K + T +                      GF QQ+  D+F+ F+ +     MR + A AA     IH++DF+ A+LN +L+E++W+K P+G++        K+ K LYGL Q+   W+  L   I  +G+  S  D CLYY+  SE      LL YV+D A      E    +     S Y+ +D G  +  LG+ IT   TGI L Q      +V + GM + + R+    + PG  L+ + +D E LD   YPYA ++G L++LA  TR D+A  V  L    A+P M HW   + VLRYL GT    ++Y+    S+    LIGY+DSD+
Sbjct:  839 EPQNYKEATSRPDAPLWVDAMDTEIQGIRSNGTWVLGFPPPGTKVLDTKWTFKLKRNSDGSTERRKARVVAKGFQQQEGRDYFEIFTPVGKYTSMRALTAKAAAEDLIIHNIDFSSAFLNGTLEEEVWIKQPEGYVEGEPGMACKLVKSLYGLKQAPRAWHLNLDKIIQEKGFKPSEADPCLYYHTGSEYHPETYLLVYVDDVAIYTKSQESANALISYFSSKYKLRDLGAAELFLGISITRQPTGIKLAQERMINDLVAKYGMENSNGRLLP--MSPGTKLT-KDEDSEPLDTSKYPYATLVGALLYLANCTRPDIAYPVGVLARFMANPGMSHWHAAKGVLRYLAGTSTYGLNYSKAGSSS---TLIGYTDSDF 1208          
BLAST of mRNA_S-ischiensis_contig85.20176.1 vs. uniprot
Match: Q2R459_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q2R459_ORYSJ)

HSP 1 Score: 181 bits (459), Expect = 4.930e-47
Identity = 119/376 (31.65%), Postives = 191/376 (50.80%), Query Frame = 1
Query:   16 PSTTREALAGPDADKWQEVMDKELQGLWNKGAFSDKPAPPDRKPVKTHYV---------------------GFTQQQDVDFFQTFSYIFGLDVMRLVLATAACHGWAIHSLDFTQAYLNASLQEDIWLKLPDGH--------IVKVNKVLYGLNQSALEWYKELRSTILGEGWSTSANDECLYYYRSEDGGVAVLLTYVNDTAFTGDYDEEIKRMRDTLLSTYEGQDWGVPDQLLGVRITT-DETGIILDQLLYTRSIVTEGMGSLDLRITTSLLDPGVDLSA-RRDDEEELDCKLYPYANILGKLMFLAGMTRSDLASSVWALGCRAASPCMRHWRGLQHVLRYLTGTLDVCIHYAANTDSNDEQVLIGYSDSDW 1050
            P T  E  + PDAD W+E +  E+  + + G +     P   KPV   +V                     G+TQ++  DFF T+S +  L ++R++LA  A HG  +H +D   A+LN  L+E+I++  PDG+        + K+ K LYGL Q+  +W+++  +T+   G+  + +D+C+YY      GV +L  YV+D    G     I+ ++D L  ++E +D G+ D +L +++   DE GI L Q  Y   +++   G  D +   +  DP V L   RR   ++L      Y+ I+G LM+LA  TR D++ +V  L    ++    HW  L+ V+ YL GT+   IHYA        +VL GYSDS+W
Sbjct:  858 PRTIEETYSSPDADYWKEAVRSEMDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTMIRVLLALVASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGYGLEGQKGMVCKLLKSLYGLKQAPKQWHEKFDNTLTSAGFVVNEDDKCVYYRYGGGEGV-ILCLYVDDILIFGTSLNVIEEVKDFLSKSFEMKDLGMADVILNIKLLRGDEGGITLAQSHYVDKVLSR-FGYNDCKAAPTPYDPSVLLRKNRRIARDQLR-----YSQIIGSLMYLASATRPDISFAVSKLSRFVSNLGDDHWHALERVMHYLKGTMSYGIHYAGYP-----KVLEGYSDSNW 1221          
BLAST of mRNA_S-ischiensis_contig85.20176.1 vs. uniprot
Match: Q2QQZ8_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q2QQZ8_ORYSJ)

HSP 1 Score: 181 bits (458), Expect = 6.440e-47
Identity = 119/376 (31.65%), Postives = 194/376 (51.60%), Query Frame = 1
Query:   16 PSTTREALAGPDADKWQEVMDKELQGLWNKGAFSDKPAPPDRKPVKTHYV---------------------GFTQQQDVDFFQTFSYIFGLDVMRLVLATAACHGWAIHSLDFTQAYLNASLQEDIWLKLPDGHIV--------KVNKVLYGLNQSALEWYKELRSTILGEGWSTSANDECLYYYRSEDGGVAVLLTYVNDTAFTGDYDEEIKRMRDTLLSTYEGQDWGVPDQLLGVRITT-DETGIILDQLLYTRSIVTEGMGSLDLRITTSLLDPGVDLSA-RRDDEEELDCKLYPYANILGKLMFLAGMTRSDLASSVWALGCRAASPCMRHWRGLQHVLRYLTGTLDVCIHYAANTDSNDEQVLIGYSDSDW 1050
            P T  EA + PDAD W+E +  E+  + + G +     P   KPV   +V                     G+TQ++  DFF T+S +  L ++R++LA AA HG  +H ++   A+LN  L+E+I++  PDG+++        K+ K LYGL Q+  +W+++  +T+   G+  +  D+C+YY      GV +L  YV+D    G     I+ ++D L  ++E +D G  D +L +++   DE GI L Q  Y   +++   G  D +   +  DP + L   RR   ++L      Y+ I+G LM+LA  TR D++ +V  L    ++P   +W+ L+ V+RYL GT+   IHY         +VL GYSDS+W
Sbjct:  687 PRTIEEAYSSPDADYWKEAVCSEIDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTMIRVLLALAASHGLLVHQMNIKTAFLNGDLEEEIYMDQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSVGFVVNEADKCVYYRYGGGEGV-ILCLYVDDILIFGTSLSVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLVQSHYVDKVLSR-FGYSDCKPAPTPYDPSMLLRKNRRIARDQLR-----YSQIIGSLMYLASTTRPDISFAVSKLSRFVSNPGDDYWQALERVMRYLKGTMSYGIHYTGYP-----KVLEGYSDSNW 1050          
BLAST of mRNA_S-ischiensis_contig85.20176.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT)

HSP 1 Score: 174 bits (442), Expect = 1.280e-45
Identity = 106/375 (28.27%), Postives = 196/375 (52.27%), Query Frame = 1
Query:   13 EPSTTREALAGPDADKWQEVMDKELQGLWNKGAFSDKPAPPDRKPVKTHYV---------------------GFTQQQDVDFFQTFSYIFGLDVMRLVLATAACHGWAIHSLDFTQAYLNASLQEDIWLKLPDGHIVK--------VNKVLYGLNQSALEWYKELRSTILGEGWSTSANDECLYYYRSEDGGVAVLLTYVNDTAFTGDYDEEIKRMRDTLLSTYEGQDWGVPDQLLGVRITTDETGIILDQLLYTRSIVTEGMGSLDLRITTSLLDPGVDLSARRDDEEELDCKLYPYANILGKLMFLAGMTRSDLASSVWALGCRAASPCMRHWRGLQHVLRYLTGTLDVCIHYAANTDSNDEQVLIGYSDSDW 1050
            EP+T  EAL GP+A++W E M +E+  L     +     P DRK V   +V                     GF+Q+  VD+ +TFS +   + +R V+A +   G  +H +D T A+LN  L++++++K P+G  VK        +NK LYGL QS+  W   L   +   G++ + +D C+Y  + EDG + V+  +V+D    G  DE+I ++++++   ++ +D G    +LG+++  ++  + + Q  YT SI+ +  G  + +   + +D    L +  +D E  + + +  A  +G L++L+  TR D+  +V  +   +A+P   HW  ++ + RYL GT++  + Y+ N + +     +G+SD+DW
Sbjct:  145 EPTTVSEALCGPNAERWHEAMQQEMDSLQEHDVWELTELPKDRKAVGCKWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFESIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKEHLACKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYV-KEEDGNIFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQEDAKVWIGQPTYTASIIKK-YGMENCKPVETPVDLSSKLVSAMEDSELFNKEEHQSA--VGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPD----CVGFSDADW 511          
BLAST of mRNA_S-ischiensis_contig85.20176.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT)

HSP 1 Score: 176 bits (447), Expect = 1.890e-45
Identity = 108/375 (28.80%), Postives = 198/375 (52.80%), Query Frame = 1
Query:   13 EPSTTREALAGPDADKWQEVMDKELQGLWNKGAFSDKPAPPDRKPVKTHYV---------------------GFTQQQDVDFFQTFSYIFGLDVMRLVLATAACHGWAIHSLDFTQAYLNASLQEDIWLKLPDG-------HIV-KVNKVLYGLNQSALEWYKELRSTILGEGWSTSANDECLYYYRSEDGGVAVLLTYVNDTAFTGDYDEEIKRMRDTLLSTYEGQDWGVPDQLLGVRITTDETGIILDQLLYTRSIVTEGMGSLDLRITTSLLDPGVDLSARRDDEEELDCKLYPYANILGKLMFLAGMTRSDLASSVWALGCRAASPCMRHWRGLQHVLRYLTGTLDVCIHYAANTDSNDEQVLIGYSDSDW 1050
            EP+T  EAL GP+A++W E M +E+  L     +     P DRK V   +V                     GF+Q+  VD+ +TFS +   + +R V+A +   G  +H +D T A+LN  L++++++K P+G       H+V K+NK LYGL QS+  W   L   +   G++ + +D C+Y  + EDG + V+  +V+D    G  DE+I ++++++   ++ +D G    +LG+++  ++  + + Q  YT SI+ +  G  + +   + +D    L +  +D E  + + Y  A  +G L++L+  TR D+  +V  +   +A+P   HW  ++ + RYL GT++  + Y+ N + +     +G+SD+DW
Sbjct:  759 EPTTVSEALCGPNAERWHEAMQQEMDSLQEHDVWELTELPKDRKAVGCKWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFEKIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKEHLVCKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYV-KEEDGDIFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQEDAKVWIGQPTYTASIIKK-YGMENCKPVETPVDLSSKLVSAIEDSELFNKEEYQSA--VGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPD----CVGFSDADW 1125          
BLAST of mRNA_S-ischiensis_contig85.20176.1 vs. uniprot
Match: A0A1M2V3W8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3W8_TRAPU)

HSP 1 Score: 176 bits (445), Expect = 2.440e-45
Identity = 119/382 (31.15%), Postives = 187/382 (48.95%), Query Frame = 1
Query:   13 EPSTTREALAGPDADKWQEVMDKELQGLWNKGAFSDKPAPPDRKPVKTHYV---------------------GFTQQQDVDFFQTFSYIFGLDVMRLVLATAACHGWAIHSLDFTQAYLNASLQEDIWLKLPDGH------IVKVNKVLYGLNQSALEWYKELRSTILGE-GWSTSANDECLYYYRSEDGGVAVLLTYVNDTAFTGDYDEEIKRMRDTLLSTYEGQDWGVPDQLLGVRITTD--ETGIILDQLLYTRSIVTEGMGSLDLRITTSLLDPGVDLSARRDDEEELDCKLYPYANILGKLMFLAGMTRSDLASSVWALGCRAASPCMRHWRGLQHVLRYLTGTLDVCIHYAANTDSN-----DEQVLIGYSDSDWG 1053
            EP T  EA A P+  +W+  MD E+  L   G ++    P  RKP+   +V                     GF+Q   +D+F+TF+ +   D +RL+LA AA     +   D   AYLNA L E+I+++ P G+      IV++ K LYGL Q+  +W   +   +  + G+    +D C+Y  +S  G + ++  +V+D A   D  + +  +R  L   Y+  D G P  LLG  I+ D  +  + + Q  Y ++++ +     D    T+ LDP V L    +D +  + K  PY  ++G LM+ A  TR D++ +V AL   +A P + HW   + VLRYL GT D  I Y+   ++      D   L GYSD+DWG
Sbjct:   14 EPRTLSEAQAAPEWPEWKRAMDDEIAQLRKLGTYAPADLPAGRKPIGCRWVYRLKRDSDGRIVRYKARLVAQGFSQAPGLDYFETFAPVIRTDSLRLLLAIAAERNMELAQFDVVGAYLNADLDEEIYMRQPPGYEEGSSPIVRLRKALYGLKQAGXQWNHHINKVLTADLGFQRLNSDPCVYLKKSPKG-LTIVGMHVDDMAALADTPDLMDTLRSGLARHYKITDLGTPRLLLGFEISRDRKKRTLSIKQSQYIQTVL-DRFKMADCNPVTTPLDPNVKLCKEPEDADLSEMKGVPYQALIGSLMYAALGTRPDISYAVQALSQYSARPGITHWTAAKRVLRYLKGTQDFGILYSGKGETRIRAYYDNFRLEGYSDADWG 393          
BLAST of mRNA_S-ischiensis_contig85.20176.1 vs. uniprot
Match: A0A5N6PGV2_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PGV2_9ASTR)

HSP 1 Score: 174 bits (441), Expect = 2.550e-45
Identity = 110/375 (29.33%), Postives = 189/375 (50.40%), Query Frame = 1
Query:   13 EPSTTREALAGPDADKWQEVMDKELQGLWNKGAFSDKPAPPDRKPVKTHYV---------------------GFTQQQDVDFFQTFSYIFGLDVMRLVLATAACHGWAIHSLDFTQAYLNASLQEDIWLKLPDGHIV--------KVNKVLYGLNQSALEWYKELRSTILGEGWSTSANDECLYYYRSEDGGVAVLLTYVNDTAFTGDYDEEIKRMRDTLLSTYEGQDWGVPDQLLGVRITTDETGIILDQLLYTRSIVTEGMGSLDLRITTSLLDPGVDLSARRDDEEELDCKLYPYANILGKLMFLAGMTRSDLASSVWALGCRAASPCMRHWRGLQHVLRYLTGTLDVCIHYAANTDSNDEQVLIGYSDSDW 1050
            +P T +EA+   DA+ W+E +  E+  + +   +     P   KP+ + ++                     GFTQ+  +D+F T+S +  +  +R +++ AA +G  IH +D   A+LN  L E+I++  P+G +V        K+ K LYGL Q+  +WY++   T+  +G+  + +D C+Y  RS+ G V + L YV+D    G    +I + +  L S +E +D G  D +LGV+I     GI L Q  Y   ++ +     +L    +  DP + L  ++++ E +      YA I+G +MFL   TR D+A +V  L     +P   HW  +  ++RYL GT+++C+HY     +    VL GY D++W
Sbjct:  184 DPKTYQEAITSVDANLWKEAIKSEVDSILSNHTWELTDLPKGNKPIGSKWIFKKKLRPDGTVDKYKARLVIRGFTQKHGLDYFDTYSPVTKITTIRSLISIAAINGLLIHQMDVKTAFLNGDLDEEIYMLQPEGFVVSGLESKVCKLRKSLYGLKQAPKKWYEKFDRTLKQDGYIVNNSDSCVYSKRSKTGYVLICL-YVDDMLIFGADMHDINQTKAFLSSKFEMKDLGEADVILGVKIKRTWNGISLCQSHYIEQMLKK-FDCFELNPVKTPYDPSILL--KKNNHESVSQS--EYAKIIGSVMFLMNYTRPDIAYTVSRLSRYTHNPSKEHWSAIHRLMRYLRGTMELCLHY-----NKFPAVLEGYCDANW 547          
BLAST of mRNA_S-ischiensis_contig85.20176.1 vs. uniprot
Match: A0A5D3C5T2_CUCME (Ty1-copia retrotransposon protein n=8 Tax=Cucumis melo TaxID=3656 RepID=A0A5D3C5T2_CUCME)

HSP 1 Score: 173 bits (438), Expect = 3.010e-44
Identity = 112/376 (29.79%), Postives = 183/376 (48.67%), Query Frame = 1
Query:   10 QEPSTTREALAGPDADKWQEVMDKELQGLWNKGAFSDKPAPPDRKPVKTHY---------------------VGFTQQQDVDFFQTFSYIFGLDVMRLVLATAACHGWAIHSLDFTQAYLNASLQEDIWLKLPDGH--------IVKVNKVLYGLNQSALEWYKELRSTILGEGWSTSANDECLYYYRSEDGGVAVLLTYVNDTAFTGDYDEEIKRMRDTLLSTYEGQDWGVPDQLLGVRITTDETGIILDQLLYTRSIVTEGMGSLDLRITTSLLDPGVDLSARRDDEEELDCKLYPYANILGKLMFLAGMTRSDLASSVWALGCRAASPCMRHWRGLQHVLRYLTGTLDVCIHYAANTDSNDEQVLIGYSDSDW 1050
            ++P T +EAL   D+  W+E +  EL  L     +     P   KP++  +                     VG+TQ+Q VD+F T+S +  +  +R ++A AA H   IH +D   A+LN +L+E+I++  P+G         + K+ K LYGL Q+  +WY++  +T++  G+  +++D C+Y  +       ++  YV+D    G   E I   +  L S +E +D G  D +LGV+I  ++T + L Q  Y   I+ +   S D+    +  D    L   + D          YA I+G +M+L   TR D+A +V  L     +P   HW  L+H+LRYL GT+D C+H+          VL GY D++W
Sbjct:  832 EDPKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGNLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYS-KMVGADCILICLYVDDMLIFGTNMELITDTKYFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKK-FDSFDVSPVRTPFDASKHLKKNKGDSVSQP----EYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHF-----KKFPAVLEGYCDANW 1196          
BLAST of mRNA_S-ischiensis_contig85.20176.1 vs. uniprot
Match: A0A6D2J8G6_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2J8G6_9BRAS)

HSP 1 Score: 168 bits (425), Expect = 3.410e-43
Identity = 103/354 (29.10%), Postives = 173/354 (48.87%), Query Frame = 1
Query:   13 EPSTTREALAGPDADKWQEVMDKELQGLWNKGAFSDKPAPPDRKPVKTHYVGFTQQQDVDFFQTFSYIFGLDVMRLVLATAACHGWAIHSLDFTQAYLNASLQEDIWLKLPDGHIV--------KVNKVLYGLNQSALEWYKELRSTILGEGWSTSANDECLYYYRSEDGGVAVLLTYVNDTAFTGDYDEEIKRMRDTLLSTYEGQDWGVPDQLLGVRITTDETGIILDQLLYTRSIVTEGMGSLDLRITTSLLDPGVDLSARRDDEEELDCKLYPYANILGKLMFLAGMTRSDLASSVWALGCRAASPCMRHWRGLQHVLRYLTGTLDVCIHYAANTDSNDEQVLIGYSDSDW 1050
            EP T  EA++ P+AD W+E ++ E+  +     +     PP          GF Q + +DFF T+S +  +  +R+++A A+     IH +D   A+LN  L+E+I++K P+G +         K+ K LYGL Q+  +W+++    ++  G+S +  D+C+Y  ++   G  +L  YV+D    G   + I++ ++ L S ++ +D G+ D +LG++IT    GI L Q  Y   I+         + +       VD                 YA I+G LM+L   TR DLA +V  L    ++P   HW+ +  VL Y+  T    +HY       +  VL GYSD++W
Sbjct:  184 EPRTYSEAMSTPEADLWKEAVNSEMDSILQNHTYIITDLPP----------GFRQVEGLDFFDTYSPVTRITSIRILIAIASLRDLEIHQMDVKTAFLNGDLEEEIYMKQPEGFVTPGQEHKVCKLVKSLYGLKQAPKQWHEKFDHVMMSNGFSINECDKCIYV-KNTPSGYVLLCLYVDDMLIMGSNKDIIQQTKNMLKSQFDMKDMGLADVILGIKITRTSEGITLSQEHYAEKILERFK-----KYSNGTAKTPVDTQLHLTKNSGEGVSQVEYARIIGSLMYLTNCTRPDLAHAVNVLSRYTSNPGHTHWKAITRVLNYVRHTKSYGLHYG-----KEPAVLEGYSDANW 516          
BLAST of mRNA_S-ischiensis_contig85.20176.1 vs. uniprot
Match: A0A2G8S5W1_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8S5W1_9APHY)

HSP 1 Score: 166 bits (421), Expect = 5.520e-42
Identity = 123/373 (32.98%), Postives = 185/373 (49.60%), Query Frame = 1
Query:   28 REALAGPDADKWQEVMDKELQGLWNKGAFSDKPAPP---------------DRKPVKTHYV------GFTQQQDVDFFQTFSYIFGLDVMRLVLATAACHGWAIHSLDFTQAYLNASLQEDIWLKLPDG-------HIV-KVNKVLYGLNQSALEWYKELRSTILGEGWSTSANDECLYYYRSEDGGVAVLLTYVNDTAFTGDYDEEIKRMRDTLLSTYEGQDWGVPDQLLGVRITTDETG--IILDQLLYTRSIVTEGMGSLDLRITTSLLDPGVDL-SARRDDEEELDCKLYPYANILGKLMFLAGMTRSDLASSVWALGCRAASPCMRHWRGLQHVLRYLTGTLDVCIHYAANTDSNDEQVLIGYSDSDW 1050
            R+A+AGPD +KW+E M++EL  +     +    APP               D   V T +       GF+Q   VDF +T S        RLVLA A  + W IH +DF  AYLN  L E I+++ P G       H+V ++ K LYGL Q+ L+WY+++ + +   G + S  D  +++   +DG V +++ +V+D     +    +  ++  L + YE  D G    LLG  I  D T   I L Q  Y  +I+     S  L IT  L DP  +L +   DDE   + +  PYA ++G LM+ A  TR D+A +V  L    A P   HW   + +LRYL GT D  + + +++D      L+GYSD+D+
Sbjct:  971 RDAMAGPDREKWREAMEEELDRISQMETYELVEAPPGANIVGSVWALRKKRDENNVVTKFKARLCAQGFSQIPGVDFDKTASPTARPSSFRLVLALANANDWEIHQIDFKNAYLNGDLNETIYMRQPRGFEAPGRTHLVWRLKKALYGLKQAGLQWYRKVCALMDEIGLTRSDYDPGVFFCF-DDGAVIIIVVHVDDCTLVTNSTRLMVALKGQLRARYEIVDLGEIKWLLGFEIRRDRTARTISLSQAAYIDTILARFSMSDALTITIPL-DPHSNLFNYTLDDEIRDEMRHIPYAQLVGSLMYAAVGTRPDIAFAVSTLARFMADPAPLHWEAAKRILRYLKGTRDAVLSFGSSSDG-----LLGYSDADF 1336          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A383VEJ4_TETOB9.320e-5134.04Integrase catalytic domain-containing protein n=1 ... [more]
Q2R459_ORYSJ4.930e-4731.65Retrotransposon protein, putative, Ty1-copia subcl... [more]
Q2QQZ8_ORYSJ6.440e-4731.65Retrotransposon protein, putative, Ty1-copia subcl... [more]
A0A7D9HZ03_PARCT1.280e-4528.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HEL0_PARCT1.890e-4528.80Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A1M2V3W8_TRAPU2.440e-4531.15Retrovirus-related Pol polyprotein from transposon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig85contigS-ischiensis_contig85:635616..636731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score182.2
Seed ortholog evalue4.2e-43
Seed eggNOG ortholog15368.BRADI3G49835.1
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37YYP@33090,3GQD7@35493,3IKKZ@38820,3M3FD@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1053
Cds size1053
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817345.099602-CDS-S-ischiensis_contig85:635615..6357791622817345.099602-CDS-S-ischiensis_contig85:635615..635779Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 635616..635779 +
1695741043.961624-CDS-S-ischiensis_contig85:635615..6357791695741043.961624-CDS-S-ischiensis_contig85:635615..635779Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 635616..635779 +
1622817345.117554-CDS-S-ischiensis_contig85:635842..6367311622817345.117554-CDS-S-ischiensis_contig85:635842..636731Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 635843..636731 +
1695741043.973616-CDS-S-ischiensis_contig85:635842..6367311695741043.973616-CDS-S-ischiensis_contig85:635842..636731Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 635843..636731 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig85.20176.1prot_S-ischiensis_contig85.20176.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig85 635616..636731 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig85.20176.1

>prot_S-ischiensis_contig85.20176.1 ID=prot_S-ischiensis_contig85.20176.1|Name=mRNA_S-ischiensis_contig85.20176.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=351bp
SSSQEPSTTREALAGPDADKWQEVMDKELQGLWNKGAFSDKPAPPDRKPV
KTHYVGFTQQQDVDFFQTFSYIFGLDVMRLVLATAACHGWAIHSLDFTQA
YLNASLQEDIWLKLPDGHIVKVNKVLYGLNQSALEWYKELRSTILGEGWS
TSANDECLYYYRSEDGGVAVLLTYVNDTAFTGDYDEEIKRMRDTLLSTYE
GQDWGVPDQLLGVRITTDETGIILDQLLYTRSIVTEGMGSLDLRITTSLL
DPGVDLSARRDDEEELDCKLYPYANILGKLMFLAGMTRSDLASSVWALGC
RAASPCMRHWRGLQHVLRYLTGTLDVCIHYAANTDSNDEQVLIGYSDSDW
G
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mRNA from alignment at S-ischiensis_contig85:635616..636731+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig85.20176.1 ID=mRNA_S-ischiensis_contig85.20176.1|Name=mRNA_S-ischiensis_contig85.20176.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1116bp|location=Sequence derived from alignment at S-ischiensis_contig85:635616..636731+ (Schizocladia ischiensis KU_0333)
TCCTCAAGCCAAGAGCCGTCTACAACGAGGGAGGCGTTGGCGGGGCCGGA TGCAGACAAGTGGCAGGAGGTGATGGACAAGGAGTTGCAAGGCCTGTGGA ACAAGGGTGCCTTCAGTGACAAGCCTGCACCGCCGGACCGAAAGCCAGTC AAGACCCACTACGTGTACAAGATCAAGCACAAGGCGGACGGGAGCGTGGA GCGGTACGAGGCGTGACTCGTGGCGAGAGGCTTCACTCAGCAACAAGACG TGGACTTCTTCCAGACCTTCAGCTATATATTTGGCCTTGACGTGATGCGG TTGGTCTTGGCCACTGCTGCGTGTCACGGATGGGCCATTCACTCCCTCGA CTTCACCCAAGCGTACCTGAATGCATCTCTTCAAGAAGACATCTGGCTCA AGCTACCGGACGGGCACATCGTCAAGGTGAACAAGGTACTCTACGGCTTG AATCAATCTGCTCTGGAGTGGTACAAGGAGCTACGGAGCACAATCCTGGG GGAGGGCTGGAGCACCAGTGCCAACGACGAGTGTCTCTACTACTACCGGA GTGAGGACGGGGGTGTTGCCGTACTACTGACGTATGTCAACGACACTGCC TTCACCGGCGACTACGACGAGGAGATCAAGAGAATGCGGGACACACTGCT GTCTACGTACGAGGGGCAAGACTGGGGCGTGCCTGATCAACTGCTGGGAG TGCGGATTACCACGGACGAGACAGGAATCATCCTGGATCAGCTACTGTAC ACGAGGAGCATCGTCACCGAGGGCATGGGATCTCTGGACCTGCGGATCAC AACTTCACTGCTCGACCCTGGGGTGGACCTGTCTGCGCGACGCGACGATG AGGAGGAGCTGGACTGCAAGCTGTATCCGTATGCTAACATCCTGGGCAAG CTCATGTTCCTGGCGGGGATGACTCGGTCCGACCTGGCCAGCAGTGTATG GGCGCTTGGGTGCCGTGCAGCGTCCCCGTGCATGAGACACTGGCGTGGAC TGCAACATGTGCTGCGGTATCTCACCGGAACACTTGACGTGTGCATCCAC TACGCGGCCAACACGGACAGCAACGACGAGCAAGTCCTCATCGGCTACTC AGACTCCGACTGGGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig85:635616..636731+

>mRNA_S-ischiensis_contig85.20176.1 ID=mRNA_S-ischiensis_contig85.20176.1|Name=mRNA_S-ischiensis_contig85.20176.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2106bp|location=Sequence derived from alignment at S-ischiensis_contig85:635616..636731+ (Schizocladia ischiensis KU_0333)
TCCTCAAGCCAAGAGCCGTCTACAACGAGGGAGGCGTTGGCGGGGCCGGA
TGCAGACAAGTGGCAGGAGGTGATGGACAAGGAGTTGCAAGGCCTGTGGA
ACAAGGGTGCCTTCAGTGACAAGCCTGCACCGCCGGACCGAAAGCCAGTC
AAGACCCACTACGTTCCTCAAGCCAAGAGCCGTCTACAACGAGGGAGGCG
TTGGCGGGGCCGGATGCAGACAAGTGGCAGGAGGTGATGGACAAGGAGTT
GCAAGGCCTGTGGAACAAGGGTGCCTTCAGTGACAAGCCTGCACCGCCGG
ACCGAAAGCCAGTCAAGACCCACTACGTAGGCTTCACTCAGCAACAAGAC
GTGGACTTCTTCCAGACCTTCAGCTATATATTTGGCCTTGACGTGATGCG
GTTGGTCTTGGCCACTGCTGCGTGTCACGGATGGGCCATTCACTCCCTCG
ACTTCACCCAAGCGTACCTGAATGCATCTCTTCAAGAAGACATCTGGCTC
AAGCTACCGGACGGGCACATCGTCAAGGTGAACAAGGTACTCTACGGCTT
GAATCAATCTGCTCTGGAGTGGTACAAGGAGCTACGGAGCACAATCCTGG
GGGAGGGCTGGAGCACCAGTGCCAACGACGAGTGTCTCTACTACTACCGG
AGTGAGGACGGGGGTGTTGCCGTACTACTGACGTATGTCAACGACACTGC
CTTCACCGGCGACTACGACGAGGAGATCAAGAGAATGCGGGACACACTGC
TGTCTACGTACGAGGGGCAAGACTGGGGCGTGCCTGATCAACTGCTGGGA
GTGCGGATTACCACGGACGAGACAGGAATCATCCTGGATCAGCTACTGTA
CACGAGGAGCATCGTCACCGAGGGCATGGGATCTCTGGACCTGCGGATCA
CAACTTCACTGCTCGACCCTGGGGTGGACCTGTCTGCGCGACGCGACGAT
GAGGAGGAGCTGGACTGCAAGCTGTATCCGTATGCTAACATCCTGGGCAA
GCTCATGTTCCTGGCGGGGATGACTCGGTCCGACCTGGCCAGCAGTGTAT
GGGCGCTTGGGTGCCGTGCAGCGTCCCCGTGCATGAGACACTGGCGTGGA
CTGCAACATGTGCTGCGGTATCTCACCGGAACACTTGACGTGTGCATCCA
CTACGCGGCCAACACGGACAGCAACGACGAGCAAGTCCTCATCGGCTACT
CAGACTCCGACTGGGGCAGGCTTCACTCAGCAACAAGACGTGGACTTCTT
CCAGACCTTCAGCTATATATTTGGCCTTGACGTGATGCGGTTGGTCTTGG
CCACTGCTGCGTGTCACGGATGGGCCATTCACTCCCTCGACTTCACCCAA
GCGTACCTGAATGCATCTCTTCAAGAAGACATCTGGCTCAAGCTACCGGA
CGGGCACATCGTCAAGGTGAACAAGGTACTCTACGGCTTGAATCAATCTG
CTCTGGAGTGGTACAAGGAGCTACGGAGCACAATCCTGGGGGAGGGCTGG
AGCACCAGTGCCAACGACGAGTGTCTCTACTACTACCGGAGTGAGGACGG
GGGTGTTGCCGTACTACTGACGTATGTCAACGACACTGCCTTCACCGGCG
ACTACGACGAGGAGATCAAGAGAATGCGGGACACACTGCTGTCTACGTAC
GAGGGGCAAGACTGGGGCGTGCCTGATCAACTGCTGGGAGTGCGGATTAC
CACGGACGAGACAGGAATCATCCTGGATCAGCTACTGTACACGAGGAGCA
TCGTCACCGAGGGCATGGGATCTCTGGACCTGCGGATCACAACTTCACTG
CTCGACCCTGGGGTGGACCTGTCTGCGCGACGCGACGATGAGGAGGAGCT
GGACTGCAAGCTGTATCCGTATGCTAACATCCTGGGCAAGCTCATGTTCC
TGGCGGGGATGACTCGGTCCGACCTGGCCAGCAGTGTATGGGCGCTTGGG
TGCCGTGCAGCGTCCCCGTGCATGAGACACTGGCGTGGACTGCAACATGT
GCTGCGGTATCTCACCGGAACACTTGACGTGTGCATCCACTACGCGGCCA
ACACGGACAGCAACGACGAGCAAGTCCTCATCGGCTACTCAGACTCCGAC
TGGGGC
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