mRNA_S-ischiensis_contig85.20169.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig85.20169.1 vs. uniprot
Match: A0A6H5K5X9_9PHAE (Uroporphyrinogen decarboxylase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K5X9_9PHAE) HSP 1 Score: 458 bits (1178), Expect = 3.650e-158 Identity = 219/265 (82.64%), Postives = 244/265 (92.08%), Query Frame = 3
Query: 165 CSVPPMCMSAADDHDILLRVARGEQADRSPVWLMRQAGRYMKAFRKFSDMYPFRHRSETPEIAIELSLQPWQAFGVDGVIMFSDILTPLPAMGVEFDVVKGKGPVIHNPIRTASDVEAVRPLQDIDGKLPFVGETLRALRSETEGKATLLGFVGAPWTLVAYASEGGSSKHALHTKNMMMREPALFHSLMKKMAQSVGDYACYQAEQGAQVIQVFESWAHQMVPSQFETFAKPYADMAMSILKAKHPEVPVIYFANGGSSYLESQ 959
C CMS++D+HDILLRVA+GE+A+R+PVWLMRQAGRYM AFRK+SD YPFRHRSETPEIAIELSLQPW+ FGVDGVIMFSDILTPLP+MGV+FDVVKG GPVI NPIRT +DVEAVR ++DIDGKLPFVGETL+ALRSETEGK+TL+GFVGAPWTL AY+ EGGSSKHALHTK MMM +PALFHSLM K+A S+GDYACYQ E GAQVIQVFESWAHQM+PSQFETFAKPYAD+AMSILK +HP+VPVIYFANGGSSYLESQ
Sbjct: 68 CGRSRPCMSSSDEHDILLRVAKGEKAERAPVWLMRQAGRYMSAFRKYSDSYPFRHRSETPEIAIELSLQPWRTFGVDGVIMFSDILTPLPSMGVDFDVVKGTGPVISNPIRTKADVEAVRVMEDIDGKLPFVGETLKALRSETEGKSTLIGFVGAPWTLAAYSIEGGSSKHALHTKKMMMEDPALFHSLMTKLANSIGDYACYQVENGAQVIQVFESWAHQMIPSQFETFAKPYADLAMSILKQRHPDVPVIYFANGGSSYLESQ 332
BLAST of mRNA_S-ischiensis_contig85.20169.1 vs. uniprot
Match: A0A7S2UYW2_9STRA (Uroporphyrinogen decarboxylase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYW2_9STRA) HSP 1 Score: 390 bits (1003), Expect = 4.300e-132 Identity = 185/266 (69.55%), Postives = 223/266 (83.83%), Query Frame = 3
Query: 177 PMCMSAADDHDILLRVARGEQADRSPVWLMRQAGRYMKAFRKFSDMYPFRHRSETPEIAIELSLQPWQAFGVDGVIMFSDILTPLPAMGVEFDVVKGKGPVIHNPIRTASDVEAVRPLQDIDGKLPFVGETLRALRSETEGKATLLGFVGAPWTLVAYASEGGSSKHALHTKNMMMREPALFHSLMKKMAQSVGDYACYQAEQGAQVIQVFESWAHQMVPSQFETFAKPYADMAMSILKAKHPEVPVIYFANGGSSYLESQGGMSA 974
P ++ A DHDILLRVARGE A+R+PVWLMRQAGRYMKAFR++SD YPFR RSETPEIA+ELSLQPW+AFGVDGVIMFSDILTPLP++GVEFDV+KG GPVI NP+RTA+D+E + PL D KL FVGETL+AL+ E EGK TL+GF+GAPWT+ AY+ EGGSSK+ + TK MMM +P LF LM +A ++ DYACYQ E GAQV+Q+FESWAHQ+ P+ F TFAKPYAD+ M ++K ++P+VPVIYFANGGSSYLE Q M+A
Sbjct: 47 PASVNIATDHDILLRVARGEDAERTPVWLMRQAGRYMKAFREYSDKYPFRVRSETPEIAVELSLQPWKAFGVDGVIMFSDILTPLPSLGVEFDVIKGHGPVISNPLRTAADIEQMTPLGDPSDKLGFVGETLQALKKEVEGKTTLVGFIGAPWTMAAYSCEGGSSKNCMITKKMMMEQPQLFDRLMNHLAVNLADYACYQVENGAQVLQIFESWAHQLSPAFFSTFAKPYADLTMKLIKERYPDVPVIYFANGGSSYLERQSDMNA 312
BLAST of mRNA_S-ischiensis_contig85.20169.1 vs. uniprot
Match: A0A836CKK7_9STRA (Uroporphyrinogen decarboxylase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKK7_9STRA) HSP 1 Score: 373 bits (958), Expect = 3.250e-125 Identity = 191/280 (68.21%), Postives = 221/280 (78.93%), Query Frame = 3
Query: 147 GRTTRTCSVPPMCMSAADDHDILLRVARGEQADRSPVWLMRQAGRYMKAFRKFSDMYPFRHRSETPEIAIELSLQPWQAFGVDGVIMFSDILTPLPAMGVEFDVVKGKGPVIHNPIRTASDVEAVRPLQ---DIDGKLPFVGETLRALRSETEGKATLLGFVGAPWTLVAYASEGGS---SKHALHTKNMMMREPALFHSLMKKMAQSVGDYACYQAEQGAQVIQVFESWAHQMVPSQFETFAKPYADMAMSILKAKHPEVPVIYFANGGSSYLESQGGM 968
G T R + M M+A DHDILLRVARGEQA R PVWLMRQAGRYMK FR +SD Y FRHRSETPEIAIELSLQPW+AFGVDGVIMFSDILTP PAMGVEFD+VKGKGP +P+RTA+D+ A++ L DID LPFVG+TLRALR ETEG ATLLGFVGAPWTL AYA EG + + A H + MM +P LF M K+A SVG+YACYQAEQGAQVIQ FESWAH+M + FE + +PYA+M+M++++ +HP VPVIYFANGGS+YLES GM
Sbjct: 34 GATHRHAAARGMTMAANADHDILLRVARGEQAHRPPVWLMRQAGRYMKDFRAYSDKYAFRHRSETPEIAIELSLQPWRAFGVDGVIMFSDILTPFPAMGVEFDIVKGKGPAFASPVRTAADIAAMKILGEQVDIDAALPFVGQTLRALRKETEGGATLLGFVGAPWTLGAYAMEGSAPAEAGRAPHMRAMMDADPRLFGEYMTKLAVSVGEYACYQAEQGAQVIQFFESWAHRMTVADFEKWGRPYAEMSMNMVRERHPGVPVIYFANGGSAYLESMRGM 313
BLAST of mRNA_S-ischiensis_contig85.20169.1 vs. uniprot
Match: A0A7S2BY39_9STRA (Uroporphyrinogen decarboxylase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BY39_9STRA) HSP 1 Score: 371 bits (952), Expect = 2.310e-124 Identity = 194/310 (62.58%), Postives = 236/310 (76.13%), Query Frame = 3
Query: 45 RLYVLLATILLWATASSLVLRADVVRSLRAPRITGR-TTRTCSVPPMCMSAADDHDILLRVARGEQADRSPVWLMRQAGRYMKAFRKFSDMYPFRHRSETPEIAIELSLQPWQAFGVDGVIMFSDILTPLPAMGVEFDVVKGKGPVIHNPIRTASDVEAVRPLQDIDGKLPFVGETLRALRSETEGKATLLGFVGAPWTLVAYASEGGSSKHALHTKNMMMREPALFHSLMKKMAQSVGDYACYQAEQGAQVIQVFESWAHQMVPSQFETFAKPYADMAMSILKAKHPEVPVIYFANGGSSYLESQGGMS 971
RL LA +L+ +T ++L+ R + RS R+ GR +T P + DHD+LLRVARGE +R+PVWLMRQAGRYMK FR +SD YPFR RSETPE+A ELSLQ W+AFG+DGVIMFSDILTPLPAMG+EFD+VKGKGPVI NP R+ V A++PL+D LPFVGETL+ LRSETEG+ATL+GFVG+P+TL AY+ G + K + TK MM P L H+L+ +A ++GDYACYQ E GAQVIQ FESWAH + P+QF+ FAKPYA+ AMSILKAKHP+VPVIYFANGGSSYLE Q M+
Sbjct: 12 RLLFPLAGLLIGST-TALLSRHSLSRSTRSY---GRPSTLRMGSPTDAPFSNPDHDLLLRVARGEDGERTPVWLMRQAGRYMKDFRAYSDKYPFRQRSETPEMATELSLQCWRAFGMDGVIMFSDILTPLPAMGIEFDMVKGKGPVISNPPRSPEAVAALKPLEDPATSLPFVGETLKNLRSETEGRATLIGFVGSPFTLAAYSVNGMADKSCIETKKMMFHAPELLHALLDHLATAIGDYACYQVEHGAQVIQYFESWAHHLTPAQFDVFAKPYANKAMSILKAKHPDVPVIYFANGGSSYLELQTDMA 317
BLAST of mRNA_S-ischiensis_contig85.20169.1 vs. uniprot
Match: A0A7S2FRM6_9EUKA (Uroporphyrinogen decarboxylase n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2FRM6_9EUKA) HSP 1 Score: 365 bits (938), Expect = 3.260e-122 Identity = 174/262 (66.41%), Postives = 215/262 (82.06%), Query Frame = 3
Query: 189 SAADDHDILLRVARGEQADRSPVWLMRQAGRYMKAFRKFSDMYPFRHRSETPEIAIELSLQPWQAFGVDGVIMFSDILTPLPAMGVEFDVVKGKGPVIHNPIRTASDVEAVRPLQDIDGKLPFVGETLRALRSETEGKATLLGFVGAPWTLVAYASEGGSSKHALHTKNMMMREPALFHSLMKKMAQSVGDYACYQAEQGAQVIQVFESWAHQMVPSQFETFAKPYADMAMSILKAKHPEVPVIYFANGGSSYLESQGGMSA 974
+A+D+HDILLR ARGE DR+PVWLMRQAGRYM AFR+FS FR RSETP+IA ELSLQPW+A+GVDGVIMFSDILTPLPA+G+EFDVV+G GPVI +P+RT +DV A+ PL D + KLPF+ E L LR ETEG++TLLGFVGAP+TLVAYA EG +++H +H+K MMM P + H+ + +A ++G+YACYQ E GAQ IQ FESWAH + P+QF TFAKPYAD AM+ +KA+HP+VPV+Y+ANGGSSYLE Q M+A
Sbjct: 60 AASDNHDILLRAARGEVVDRTPVWLMRQAGRYMGAFREFSTTIEFRQRSETPDIATELSLQPWRAYGVDGVIMFSDILTPLPALGIEFDVVRGSGPVISSPLRTLADVAAMTPLDDPEAKLPFIREILGNLRRETEGRSTLLGFVGAPFTLVAYAVEGQANRHCIHSKKMMMNNPEVLHAALDNLAVAIGEYACYQIESGAQAIQFFESWAHHLSPAQFATFAKPYADRAMAYVKARHPDVPVLYYANGGSSYLELQRDMAA 321
BLAST of mRNA_S-ischiensis_contig85.20169.1 vs. uniprot
Match: A0A6T5PC14_HETAK (Uroporphyrinogen decarboxylase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5PC14_HETAK) HSP 1 Score: 365 bits (937), Expect = 3.920e-122 Identity = 181/268 (67.54%), Postives = 214/268 (79.85%), Query Frame = 3
Query: 180 MCMSAADDHDILLRVARGEQADRSPVWLMRQAGRYMKAFRKFSDMYPFRHRSETPEIAIELSLQPWQAFGVDGVIMFSDILTPLPAMGVEFDVVKGKGPVIHNPIRTASDVEAVRPL---QDIDGKLPFVGETLRALRSETEGKATLLGFVGAPWTLVAYASEGGSSKHALHTKNMMMREPALFHSLMKKMAQSVGDYACYQAEQGAQVIQVFESWAHQMVPSQFETFAKPYADMAMSILKAKHPEVPVIYFANGGSSYLESQGGMSA 974
M M+ +HDIL+R ARGE+ +R+PVWLMRQAGRYM FRK+SD PFR RSETPEIA ELSLQ W+A+G+DGVIMFSDILTPLP G+E+DVVKGKGP I +PIRT + VEA+ L +I+ L FVGETLR LR+ETEGK +LLGF+GAPWTL AYA+EGGSSKH + K MMM+EP LFH+ + K+A+ +G+YACYQ E GAQVIQVFESWAHQ+ P FE FAKPYA M +KAKHP+VPVIYFANGGSSYLE Q M +
Sbjct: 40 MRMAVDPEHDILVRAARGEKTERTPVWLMRQAGRYMADFRKYSDKLPFRERSETPEIATELSLQCWRAYGMDGVIMFSDILTPLPGFGIEWDVVKGKGPQIKDPIRTKAQVEALTSLGGSAEIEATLGFVGETLRNLRAETEGKTSLLGFIGAPWTLAAYATEGGSSKHCMVIKQMMMKEPELFHTYLGKLAEDMGNYACYQIENGAQVIQVFESWAHQLSPFFFEHFAKPYAQKTMETIKAKHPDVPVIYFANGGSSYLELQKDMKS 307
BLAST of mRNA_S-ischiensis_contig85.20169.1 vs. uniprot
Match: A0A7S2C3G9_9STRA (Uroporphyrinogen decarboxylase (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C3G9_9STRA) HSP 1 Score: 362 bits (930), Expect = 1.080e-121 Identity = 180/286 (62.94%), Postives = 220/286 (76.92%), Query Frame = 3
Query: 117 VRSLRAPRITGRTTRTCSVPPMCMSAADDHDILLRVARGEQADRSPVWLMRQAGRYMKAFRKFSDMYPFRHRSETPEIAIELSLQPWQAFGVDGVIMFSDILTPLPAMGVEFDVVKGKGPVIHNPIRTASDVEAVRPLQDIDGKLPFVGETLRALRSETEGKATLLGFVGAPWTLVAYASEGGSSKHALHTKNMMMREPALFHSLMKKMAQSVGDYACYQAEQGAQVIQVFESWAHQMVPSQFETFAKPYADMAMSILKAKHPEVPVIYFANGGSSYLESQGGMSA 974
VRS RA TT T VP A DHD+L+R A+GE+ +R+PVWLMRQAGRYM FRK+SD YPFR RSETPEIA ELSLQ W+A+G+DGVIMFSDILTPLPAMG++FDV+KGKGPVI NP R A+D+ + L+D +LPFVGETLR LR ETEG+ +LLGFVGAP+TL AY+ G ++KH TK MM +P + H+ +A ++G+YAC+Q E+GAQVIQ FESWAH + P QF FAKPYA+ AM+I+KAKHP+VPVIYFANGGSSYLE Q M++
Sbjct: 30 VRSRRAT-----TTTTMGVPTDTPFANPDHDLLVRAAKGEECERTPVWLMRQAGRYMADFRKYSDNYPFRVRSETPEIATELSLQCWKAYGMDGVIMFSDILTPLPAMGIDFDVIKGKGPVISNPPRCAADIAKLTHLEDPGAQLPFVGETLRNLRKETEGRTSLLGFVGAPFTLAAYSVNGMANKHCFETKKMMSHDPEVMHAFCDHLATNIGEYACHQIEEGAQVIQFFESWAHHLSPDQFSEFAKPYANKAMAIVKAKHPDVPVIYFANGGSSYLERQTDMTS 310
BLAST of mRNA_S-ischiensis_contig85.20169.1 vs. uniprot
Match: W7UA58_9STRA (Uroporphyrinogen decarboxylase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UA58_9STRA) HSP 1 Score: 363 bits (932), Expect = 8.760e-121 Identity = 177/258 (68.60%), Postives = 210/258 (81.40%), Query Frame = 3
Query: 201 DHDILLRVARGEQADRSPVWLMRQAGRYMKAFRKFSDMYPFRHRSETPEIAIELSLQPWQAFGVDGVIMFSDILTPLPAMGVEFDVVKGKGPVIHNPIRTASDVEAVRPLQDIDGKLPFVGETLRALRSETEGKATLLGFVGAPWTLVAYASEGGSSKHALHTKNMMMREPALFHSLMKKMAQSVGDYACYQAEQGAQVIQVFESWAHQMVPSQFETFAKPYADMAMSILKAKHPEVPVIYFANGGSSYLESQGGMSA 974
DHDILLRVARGEQ R+PVWLMRQAGRYM AFR++S+ YPFR RSETP +AIELS+QP +AFGVDGVIMFSDILTPLPA+G+EFDV+ GKGPVI N I TA DV+ VR L D LPFVGETLR L++E G+ATLLGFVGAP+TL AY EGGSSK+ L TK MMM +P L H + K+A ++GDYACYQ E GA+VIQVFESWAHQ+ PSQF ++KPYAD +I+K +HPEVP+I+F +G SS+LE QG M+A
Sbjct: 74 DHDILLRVARGEQTHRTPVWLMRQAGRYMAAFREYSEKYPFRQRSETPSMAIELSMQPLEAFGVDGVIMFSDILTPLPALGIEFDVISGKGPVIPNRIATAMDVDNVRRLDDPASSLPFVGETLRTLKNEVAGRATLLGFVGAPFTLAAYTIEGGSSKNCLKTKRMMMYDPTLLHVYLDKLATAIGDYACYQIENGAEVIQVFESWAHQLSPSQFLKYSKPYADKVTTIVKERHPEVPIIFFGHGASSFLELQGDMAA 331
BLAST of mRNA_S-ischiensis_contig85.20169.1 vs. uniprot
Match: L1K3R9_GUITC (Uroporphyrinogen decarboxylase n=3 Tax=Guillardia theta TaxID=55529 RepID=L1K3R9_GUITC) HSP 1 Score: 354 bits (908), Expect = 4.540e-118 Identity = 167/260 (64.23%), Postives = 209/260 (80.38%), Query Frame = 3
Query: 195 ADDHDILLRVARGEQADRSPVWLMRQAGRYMKAFRKFSDMYPFRHRSETPEIAIELSLQPWQAFGVDGVIMFSDILTPLPAMGVEFDVVKGKGPVIHNPIRTASDVEAVRPLQDIDGKLPFVGETLRALRSETEGKATLLGFVGAPWTLVAYASEGGSSKHALHTKNMMMREPALFHSLMKKMAQSVGDYACYQAEQGAQVIQVFESWAHQMVPSQFETFAKPYADMAMSILKAKHPEVPVIYFANGGSSYLESQGGMSA 974
A DHDILLRVARGE+A+R+PVWLMRQAGRYMKAFR++SD YPFR RSETPEIAIELSLQPW+AFG DGVIMFSDILTPLP+MG+EFDVVKG GPVI +PIR+ +++++P+ D D +PF+ E L++LR ET+GK TLLGFVG+P+TL AY+ EG + K+ TK MM +P + H+ + +A+++ YA +Q + GAQV+QVFESWAH + P F F KPYAD A+S++K KHP VP+IYFANGGSSYLE Q M A
Sbjct: 25 ASDHDILLRVARGEEANRAPVWLMRQAGRYMKAFREYSDKYPFRQRSETPEIAIELSLQPWKAFGTDGVIMFSDILTPLPSMGIEFDVVKGSGPVIFDPIRSMDQIKSLKPIDDPDASVPFLREILQSLRKETDGKTTLLGFVGSPFTLAAYSVEGKADKNCFQTKKMMYNQPEILHAFLDHIAENIAAYAIHQIDCGAQVLQVFESWAHHLSPEDFLIFGKPYADKAISLIKQKHPNVPIIYFANGGSSYLELQRDMKA 284
BLAST of mRNA_S-ischiensis_contig85.20169.1 vs. uniprot
Match: A0A4D9CWJ7_9STRA (Uroporphyrinogen decarboxylase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWJ7_9STRA) HSP 1 Score: 362 bits (929), Expect = 1.110e-116 Identity = 177/258 (68.60%), Postives = 209/258 (81.01%), Query Frame = 3
Query: 201 DHDILLRVARGEQADRSPVWLMRQAGRYMKAFRKFSDMYPFRHRSETPEIAIELSLQPWQAFGVDGVIMFSDILTPLPAMGVEFDVVKGKGPVIHNPIRTASDVEAVRPLQDIDGKLPFVGETLRALRSETEGKATLLGFVGAPWTLVAYASEGGSSKHALHTKNMMMREPALFHSLMKKMAQSVGDYACYQAEQGAQVIQVFESWAHQMVPSQFETFAKPYADMAMSILKAKHPEVPVIYFANGGSSYLESQGGMSA 974
DHDILLRVARGEQ R+PVWLMRQAGRYM AFR++S+ YPFR RSETP +AIELS+QP +AFGVDGVIMFSDILTPLPA+G+EFDV+ GKGPVI N I TA DV+ VR L D LPFVGETLR L+ E G+ATLLGFVGAP+TL AY EGGSSK+ L TK MMM +P L H + K+A ++GDYACYQ E GA+VIQVFESWAHQ+ PSQF ++KPYAD +I+K +HPEVP+I+F +G SS+LE QG M+A
Sbjct: 365 DHDILLRVARGEQTHRTPVWLMRQAGRYMAAFREYSEKYPFRQRSETPSMAIELSMQPLEAFGVDGVIMFSDILTPLPALGIEFDVISGKGPVIPNRIATAMDVDNVRRLDDPARSLPFVGETLRTLKKEVAGRATLLGFVGAPFTLAAYTIEGGSSKNCLKTKRMMMYDPTLLHVYLDKLATAIGDYACYQIENGAEVIQVFESWAHQLSPSQFLKYSKPYADKVTAIVKERHPEVPIIFFGHGASSFLELQGDMAA 622 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig85.20169.1 >prot_S-ischiensis_contig85.20169.1 ID=prot_S-ischiensis_contig85.20169.1|Name=mRNA_S-ischiensis_contig85.20169.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=317bp MWGLQRDRLYVLLATILLWATASSLVLRADVVRSLRAPRITGRTTRTCSVback to top mRNA from alignment at S-ischiensis_contig85:568066..571639- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig85.20169.1 ID=mRNA_S-ischiensis_contig85.20169.1|Name=mRNA_S-ischiensis_contig85.20169.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3574bp|location=Sequence derived from alignment at S-ischiensis_contig85:568066..571639- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig85:568066..571639- >mRNA_S-ischiensis_contig85.20169.1 ID=mRNA_S-ischiensis_contig85.20169.1|Name=mRNA_S-ischiensis_contig85.20169.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1902bp|location=Sequence derived from alignment at S-ischiensis_contig85:568066..571639- (Schizocladia ischiensis KU_0333)back to top |